LOC118945821 (LOC106584037)


Basic Information

Item Value
gene id LOC118945821
gene name LOC106584037
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 37923846 ~ 38011831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040981.1
TCAAATACATTCCTGCTCGAATTCAAGGAAAGACTGATACAGACCAAGTCGTATCAGTCGCATGTCACGCTGGAGAGCGACATAGATGAGGAAGAGCCAGATGAGATGATGACCACGCTCGGTAGAGTAGCCTATTCATTCGTTTATTCTGCGCGCTCGATTGGTCCAGAATACTCTACTGTACGGTGAGGGAGTGAATGCCGATTTGAGAGATATTTTTTGAGAAGCTCATCGGAAACTATCTTCCTCCATTTTTTTAATAAGACCGTCGTAAATTGTACAATTATTGAAATAGTTAGAACCTTAGAATTACGCCCGCGTGATTGTCTGGTGACAGACAAGTCACTCCATCAAGGAGGTGCTGTAACGGTTGTCCCTGAAAGAGATTCCCTAAAAACGGTTTTTAGCTGGACAATTCTAACCGAACGAGGTTGGCTCAAGGAGGAGGACACACAATAGCGCGCCGCGAAATTAACCGCGTGGCTAACAAAAGAAAACAGCCTTGGTTTTTGACACTTTCGCGGTTTACAGAAATTCAAGTATTCAGCAAGACCCCTTTGTCAATCCATGAGAAAATAGTGGATTCGCTTTTTAGGTGTGCATGTGAAGCTGGCTGCTGTGGAACTGAGTAAGGAATACACCACGGAAGATGAGGAAAAGCAGAAGTGTGCTGACAGTGTCTCCCAATGATgacaaTAAAAAGCCCACAGACTGTGTTTTCAGTGAGTATTCCTGCACGCTGGGCGTCGACCTACGCCGGGGATGCAGGCGTTTCTCCGGGAACCTGCAGCTGCCCCCGTTGTCGTGGCGACAGGCCGAGAGGTCGCGAACCCCTGACAATGACTGGGTGGTCCGGcccacctccctccccttctGCATCCCACCCCGCATCGACATTACGCCGGTTGACCC

Function

NR:

description
PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4B-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040981.1 True 912 mRNA 0.49 3 37923846 38011831

Neighbor

gene id symbol gene type direction distance location
LOC110521794 NA coding downstream 94173 37828066 ~ 37829673 (-)
LOC110521793 LOC106584037 coding downstream 105516 37730498 ~ 37818330 (-)
LOC110520999 sgip1 coding downstream 224880 37588048 ~ 37698966 (-)
pars2 LOC106584039 coding downstream 361063 37560230 ~ 37562783 (-)
LOC110520997 LOC106584040 coding downstream 364611 37549840 ~ 37559235 (-)
LOC110521795 LOC106584036 coding upstream 33700 38045531 ~ 38121078 (-)
LOC110521797 dnajc6 coding upstream 140937 38152766 ~ 38213493 (-)
LOC110521798 LOC106584033 coding upstream 205096 38216927 ~ 38221934 (-)
LOC110521000 LOC106584032 coding upstream 276135 38287397 ~ 38378117 (-)
LOC110521803 LOC106584031 coding upstream 372360 38384191 ~ 38464591 (-)
G2232003 NA non-coding downstream 201988 37721628 ~ 37721858 (-)
G2232001 NA non-coding downstream 204208 37719080 ~ 37719638 (-)
G2231993 NA non-coding downstream 217347 37706237 ~ 37706499 (-)
G2231991 NA non-coding downstream 220900 37702733 ~ 37702946 (-)
G2232312 LOC106600668 non-coding upstream 130141 38141972 ~ 38143264 (-)
G2232321 NA non-coding upstream 144755 38156586 ~ 38156986 (-)
G2232342 NA non-coding upstream 189790 38201621 ~ 38202115 (-)
LOC110521791 LOC106584041 other downstream 400840 37498832 ~ 37523064 (-)
LOC110521777 LOC106584061 other downstream 1399049 36520352 ~ 36541228 (-)
G2229647 NA other downstream 1709461 36213146 ~ 36214385 (-)
G2229175 NA other downstream 2124489 35798804 ~ 35799357 (-)
G2227801 NA other downstream 3381227 34542217 ~ 34542619 (-)
G2232820 NA other upstream 753591 38765422 ~ 38767903 (-)
LOC110521806 NA other upstream 827075 38838904 ~ 38856693 (-)
G2234611 NA other upstream 1945084 39956915 ~ 39993914 (-)
G2234837 NA other upstream 2273823 40285654 ~ 40286282 (-)
G2237502 NA other upstream 4268925 42280756 ~ 42281362 (-)

Expression


Co-expression Network