LOC110521799


Basic Information

Item Value
gene id LOC110521799
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 38223112 ~ 38224803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473216.2
TGTTGACAGCAGCAGTCAATGCAGAGTGTAAACGGTAATTCCGGGTTGTCGGGGTTCCCTCTGAAACATTGGCCATcatccatcatcatcattacgcACTGAGACAGTGCCATTCCGCAACATTTGCGGACCAAGGCATCAAGGAATGTACTTGTTGCGAACCATACCGCGGCGTCAGTGTCCAAAAGCAGTCAAATGCTGCGCATGCACAACCTATTGGTGTCTTCAGTCAATGGAACCTGCCTAACCCATCACACGAAAAAAACTAGATTGGAAGATTATCAATTTACTCAGTTAGTTGTGCGGCGAGTCCCGGAAACATTGTTTTATTATTTTGTCACATGGCTGAGAGATttcaataacaacaaaaaatggcGACAATCACGTTGTTCGATGTGGGTCTTGCTGCGTCATTAAAACTATTCACGTAAACACGGGAATGAAACGCGCAAAATGCAAAAAACAGCAACAAGCTTTCCCGACAACGTGGAGTTGAATATCTGGAACCATTGAAATGTGATGATTGCTTTCAATATTTTTCTTTCGCGTTTTAAACGTGTATTTAATGTATAGGATACCTGGTCTGCGCTTTGCGATTATTGAAGGGTCCGAGATACGCTATTATGATAATATACTAAGTACAGTCTATTGGGAGTTGTATATGCTATTTGCATTTTTACAGTTACGCAACTAATGTTATGTTTTGCTCGATTGAACTGTTGTTTCAACCTTGCGCAGCAGGTTATTTTTCAAGTAAGTGTTGGCAAGTGCTCCTGCAATTCTGTGATACCAAAACAGAACCAGCAAATCGAGTTGTTTACATGAAGCGGAGGGAGAAGGAGATAGGGAGGAGCCTCCTCCGGCGGGCTACGCGACTGGACTGCTGGAGAGCCTTCGCGCACTGAGGGCGGAACCCCAAGAACCATAACAAGTCCGACGTCAGCAATGTGGTGTCCATAAATTATGCAGTTCAAACACTACCGAGTAAACAGTGGTGACTTCGACCAATTAACAAGGTTTTATTCCTTTAGGCTACATGTATCTGTTGTATAGGAAATTATATTTCAAAGGGGTTTATGAAAAAGCTGATATGCTACAGTAGTTACACATGTATTGGTAGGTATTACAGTCATGTGAGGTGAGAAAGAAACATCTTACTAATGGTAGTAAAATACCTTTCTAGAATTCTATAATGCCTGTGTGGAATTCATAGCACATACACAATTCACAATTATATCCTGTGAAAATTTACAAAGTTTTGCAGATTTTGGTAACCTATTAGAGAAACCTCTTTACATTACTTCTGCATGCAATTGTGTTCTCGTTCTTGTAATGTGATACcatgaaatacataaatacagaCATGATATTTGGATTT
>TU2551162
TACCGCGGCGTCAGTGTCCAAAAGCAGTCAAATGCTGCGCATGCACAACCTATTGGTGTCTTCAGTCAATGGAACCTGCCTAACCCATCACACGAAAAAAACTAGATTGGAAGATTATCAATTTACTCAGTTAGTTGTGCGGCGAGTCCCGGAAACATTGTTTTATTATTTTGTCACATGGCTGAGAGATttcaataacaacaaaaaatggcGACAATCACGTTGTTCGATGTGGGTCTTGCTGCGTCATTAAAACTATTCACGTAAACACGGGAATGAAACGCGCAAAATGCAACAGGTTATTTTTCAAGTAAGTGTTGGCAAGTGCTCCTGCAATTCTGTGATACCAAAACAGAACCAGCAAATCGAGTTGTTTACATGAAGCGGAGGGAGAAGGAGATAGGGAGGAGCCTCCTCCGGCGGGCTACGCGACTGGACTGCTGGAGAGCCTTCGCGCACTGAGGGCGGAACCCCAAGAACCATAACAAGTCCGACGTCAGCAATGTGGTGTCCATAAATTATGCAGTTCAAACACTACCGAGTAAACAGTGGTGACTTCGACCAATTAACAAGGTTTTATTCCTTTAGGCTACATGTATCTGTTGTATAGGAAATTATATTTCAA
>TU2551164
TACCGCGGCGTCAGTGTCCAAAAGCAGTCAAATGCTGCGCATGCACAACCTATTGGTGTCTTCAGTCAATGGAACCTGCCTAACCCATCACACGAAAAAAACTAGATTGGAAGATTATCAATTTACTCAGTTAGTTGTGCGGCGAGTCCCGGAAACATTGTTTTATTATTTTGTCACATGGCTGAGAGATttcaataacaacaaaaaatggcGACAATCACGTTGTTCGATGTGGGTCTTGCTGCGTCATTAAAACTATTCACGTAAACACGGGAATGAAACGCGCAAAATGCAAAAAACAGCAACAAGCTTTCCCGACAACGTGGAGTTGAATATCTGGAACCATTGAAATGTGATGATTGCTTTCAATATTTTTCTTTCGCGTTTTAAACGTGTATTTAATGTATAGGATACCTGGTCTGCGCTTTGCGATTATTGAAGGGTCCGAGATACGCTATTATGATAATATACTAAGTACAGTCTATTGGGAGTTGTATATGCTATTTGCATTTTTACAGTTACGCAACTAATGTTATGTTTTGCTCGATTGAACTGTTGTTTCAACCTTGCGCAGCAGGTTATTTTTCAAGTAAGTGTTGGCAAGTGCTCCTGCAATTCTGTGATACCAAAACAGAACCAGCAAATCGAGTTGTTTACATGAAGCGGAGGGAGAAGGAGATAGGGAGGAGCCTCCTCCGGCGGGCTACGCGACTGGACTGCTGGAGAGCCTTCGCGCACTGAGGGCGGAACCCCAAGAACCATAACAAGTCCGACGTCAGCAATGTGGTGTCCATAAATTATGCAGTTCAAACACTACCGAGTAAACAGTGGTGACTTCGACCAATTAACAAGGTTTTATTCCTTTAGGCTACATGTATCTGTTGTATAGGAAATTATATTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473216.2 False 1378 mRNA 0.41 2 38223112 38224803
TU2551162 False 625 lncRNA 0.44 2 38223276 38224493
TU2551164 True 904 lncRNA 0.42 2 38223276 38224493

Neighbor

gene id symbol gene type direction distance location
LOC118945789 NA coding upstream 166472 38038367 ~ 38056640 (+)
insl5a rel3 coding upstream 636111 37584989 ~ 37587002 (+)
LOC110521788 cef10 coding upstream 1157258 37062893 ~ 37065854 (+)
LOC110521785 LOC106584051 coding upstream 1431177 36768259 ~ 36791935 (+)
LOC110520996 stxbp3 coding upstream 1455801 36760942 ~ 36767311 (+)
LOC110521800 LOC100286690 coding downstream 5649 38230452 ~ 38285097 (+)
LOC118945881 NA coding downstream 36436 38261239 ~ 38261385 (+)
LOC110521807 NA coding downstream 608981 38833784 ~ 38838725 (+)
LOC110521001 LOC106584026 coding downstream 892681 39117484 ~ 39202411 (+)
LOC110521810 LOC106584025 coding downstream 1013807 39238610 ~ 39332571 (+)
G2231336 NA non-coding upstream 5710 38216934 ~ 38217402 (+)
G2231334 NA non-coding upstream 9588 38213230 ~ 38213524 (+)
G2231333 NA non-coding upstream 13097 38209468 ~ 38210015 (+)
G2231329 NA non-coding upstream 20600 38202311 ~ 38202512 (+)
G2231311 NA non-coding upstream 51094 38171084 ~ 38172018 (+)
G2231231 NA non-coding downstream 62630 38287433 ~ 38288729 (+)
G2231371 NA non-coding downstream 90980 38315783 ~ 38336981 (+)
G2231398 NA non-coding downstream 154012 38378815 ~ 38379229 (+)
G2231400 LOC106584031 non-coding downstream 157399 38382202 ~ 38385740 (+)
G2232463 NA non-coding downstream 250573 38475376 ~ 38475620 (+)
LOC110521770 igfbp-1a2 other upstream 2420144 35800643 ~ 35805071 (+)
LOC110521768 sirt5 other upstream 2487712 35693310 ~ 35735400 (+)
G2228777 NA other upstream 2703870 35518234 ~ 35519242 (+)
LOC110521757 NA other upstream 3032961 35181902 ~ 35190209 (+)
G2232661 LOC105030512 other downstream 565512 38790315 ~ 38790675 (+)
G2232855 LOC100380853 other downstream 587847 38812650 ~ 38813379 (+)
LOC110521817 LOC106584021 other downstream 1575470 39800038 ~ 39812756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032117 NA non-coding NC_007117.7 CM002890.2 31362348 ~ 31365216 (+)
grasscarp (Ctenopharyngodon idella) G487397 NA non-coding CI01000340 null 4796811 ~ 4798223 (+)