LOC110521803 (LOC106584031)


Basic Information

Item Value
gene id LOC110521803
gene name LOC106584031
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 38384191 ~ 38464591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968893.1
TGATTCTGGGGCTTACGCTTTACTGGAGTTGGTGCGGAGTGAGTAGGATCTATGGACAGAAATCTATCAGCGCTTTTAGGGATTGTATTCTCCTACCTTCGTGGATTTCCAAAATATGAATTGATGTCGTCGTTTAAAGTCGAGGAATTTCGTCTTGAAATTAAGGGCAGGTATATAGCTACGAAGTTGTGAAATAGTTCCCTTGAAGTTTTTCCTCACGAATTTCCAGTTTCCTATTCGACTACTACACCAGCCATCATATGGCGAGGCGAGTAAGGGGAGAAGGATCCGTGATTTTAACACGAATTCCATCCACGGTTTGGAATAAGAACTCGAGACTCCACTGGTGTAACTTCATGGCTGTTTTTTGGAGCTCTGTGGCAGTATTGTCGCTTCTATGTTGTGGATTTTGTGGCGCTGAAACGGAGTTTTCGATCTTGGAGGAGGCACAAGTTTTAGCCGTACAAATGAAAAAACTGTCCTCGCAGGAGCTTGGAGTCTTCACCATGCAGagaaTCTTCAACTCGTTTGTGTACACAGAGAAGACCTCAAACGGAGAGACGGAAGTACAGCAGCTTGCGAAGAAGATCCGCGAGAAGTTTAACCGTTACCTGGACGTGGTGAACAGGAACAAGCAGGTGGTGGAGGCATCCTACACGGCCCACCTGACCTCCCCCCTCACCGCCATCCAGGACTGCTGCACCATTCCCCCCTCCATGAtggaGTTCGACGGTAACTTCAACACCAACGTGTCCAAGACCATCTGCTGTGACCGGCTGTCCCCCACCGTCAACAGTCGAGCCTTTAACCCTGGACGGGACCTCAACTCAGtgTTGGCAGATAACCTGAAGTCCAACCCGGGCATCAAATGGCAGTACTTCAGCTCAGAGGAGGGCATCTTCACTGTGTTCCCCGCCCACAAGTTCCACTGCAAGGGCAACTACGAGCACCGCTGCAGGCCAGTGTACGTGTCGGCGGTGCGGCCCCAATCGAAACACATCGTGGTGATCATCGATCACGGCGTGACcattacagacacacagctgcAGATCGCCAGAGACGCTGCGCTCGTCGTCCTCAGCTCCGTAGACGAACATGACAAGGTCTCGATCCTGTCCTCAGCGGAGGCGGTGAGGTCCTGTTCGCTGGACCCGTGCTATAAGAGCTACCTGTCTCCTGCCACCAGCGAGACCAAGAGGAAGATGAGCACCTTCGTCAACAACCTCAAGGCTTCCGACAGTCCTACCCTGCACGCACTGGGCTTCCAAAAGGCCTTCCAGCTGCTCCGGAACACCAGCAATATCACCCGCCAACTCACCAATACGGACATGGTGATCATCTACCTGTCGTCTGGCATCACGTCCCGAGACGCGTCGGAGCACGAGAAGAGGGACACCCTGCGCGTGGTCAAAGAGGAGAACCGTCACCTCAACAACTCAGTCATGATCCTCACCTACGCCCTCATGAACGaGGGCGTCACCGGTCTGAAGGAGCTGGCGTTCCTGCGTGACCTGGCGGAGCAGAACTCGCTGAAGTACGGCGTGCCCGACCGCTCGGCGCTGCCGGTGGTGAAAGGAAGCATGATGGTCCTGAACCAGCTCAGTAATCTGGAGACCACCGTGGGACGCTTCTACATCAACCTGCCCAACCGCATGATTGACCTGGCCCGCTTCAGCCTGTCCTACCAGGACGCCATGGGAGACGGTTTCATCATGACGGCGAGCCGGCCATGTTACTTTGGCAACCTGTTGCTAGGCGTGGTGGGAGTAGACGTGAACCTGGCCTACATTCTAGAGGACGTCACCTACCACCAGGATTCCTTGGCCTCCTACACCTTCCTCATAGACAACAAAGGTTACACCCTGATGCACCCGTCCCTCACACGGCCCTACCTGATGACCGAGCCTCCGCTGCACACTGACATCATCCACTATGAAAACATCCCAGGGTTCCCTGTAGTACGGGACAACATACTCCgGCTGCCCCTGGGCAGTCAGGTGATAGCTGTGCCCACCAActcctctctgtcctggcacACCAACCGGCTACGAGACCCCAGCAGGGAGGCCTACAACGTCAGCTACGCATGGAAACTGGTCCAGGACACTTCGTTCATCCTGTGCATAGTGTACGTCCAGCCAGAGATCCCAGTGAAACACCTGAAGAACCTGAACACTGCTCCCAGCTCCAAGCTGCTCTATCACCGCCTGGACCTGCTGGGACAACCCTCCTCCTGTCTGCACTTCAAACAGCTGGCCACCGTCGAGAGCCCTACGGTGATGCTCTCTGCAGGGAGTTTCTCCTCTCCCTACGAGCACCTCAGTCAGCCAGAGACCAAACGCATGGTGGAACACTACACTGCCTACCTCAGTGACAACACACGCCTCATAGCCAACCCTGGCcttaagTCGTCGGTCAGGAACGAGGTGATGGCGACCAGTCACGTCACAGATGAATGGATGACACTCATGGAGATGAGTAGCCTCAACTGCTACATTGTGCGCCGTTACATAGCAACGCCCAATGGGGTGCTGCGGATTTATCCCGGCTCGCTAATGGACAAAGCCTTCGACCCAACCCGGAGACAATGGTACCAGCACGCTGTAGCCAACCCAGGCCTCATCACCTTCACTGGGCCTTACCTGGATGTGGGCGGGGCTGGCTACGTGGTCACCATCAGCCACACCATCCACGCCTCAAGTTCTCAGATGGCCTCAGGGTATGCGGTAGCCGTGATGGGCATAGACTTCACCCTGCGTTACTTGTACAAGGTTCTGCTGGACCTGCTACCCATCTGCAACCAGGACAAGGGTAACAAGATCCGgTGTTTCATCATGGAGGACAGGGGTTACCTGGTGGCCCACCCCACCCTCATCGACCCTAAAGGCCACGCCCCCGCCGAACAGCAGCACATCACCCACAAGGAACCGCTGGTGGCCAACGACATCTTGAACCACCCCAACTTTGTCAAGAAGAACCTCTGCAACAGCTTCAGTGACCGCACGGTCCAGCGCTTCTACAAGTTCAACAGCAGTATCATTGGCGACCTGACGAACCTGGTCCACGGGAGCCACTGCTCCAAGTACCGTCTGACCCGTATCCCAGGGACCAACGCTTTCGCGGGCATCGTCAACGAGACGTGCGACTCGCTGGCTTTCTGTGCCTGCAGCACCGTGGACCGCCTCTGTCTCAACTGTCACAGgatggagCAGAATGAGTGTGAGTGTCCATGTGAGTGCCCCCTGGAGGTCAATGAATGTACTGGCAACCTTAGCTACGCTGAAAACAGGAACCCCAGCTGCGAGGTGCACCAGGAGCCCCTCTCTCTGACGGTGATGGACTCCAGTCTGCAGGACACCCTGCCCCAGTGTATCAACACCCGCTGCAGCCAACGCTTCACCAGCAGTGACTGTTTTGGCGTGCTGGACTGTGAGTGGTGCATGGTGGACAGTGATGGGAAGACCCACCTGGACAAGCCTTACTGTGCCCTGCAGAAAGAGTGCTTCGGGGGCATCGTGGGGGCCAAGAGCCCTTACATGGACGGCATGGGGATGCTGGaTGAAGAGGTAGTGTCTCTGAACATGATGAAGAGTGCCCCGGTTGGGCCGGTTGCCGGGGGTATTATGGGCTGCATCATGGTGCTGGTGTTGGCTGTCTACGCCTACAGACACCAGATCCACCGACGCTCACATCAACACATGTCCCCTCTGGCTGCACAGGagATGTCCGTCAGGATGTCTAACCTGGATAACGAGAGAGACGAGCGAGACGAGGACAGCCACGAAGACAGGGGGATCATCAGCAACACCCGGTTCATCGCGGCGGTGATCGAGAGACACACCCACAGCCCTGAACGCCGGAGGAGGTACTGGGGACGGTCAGGGACGGAGAGTGACCACGGCTACAGCACCATGAGTCCTCAGGAGGACAGCGAGAACCCTCCCTGCAACAACGACCCACTGTCGGCCGGGGTGGACGTGGGTAACCACGACGATGACCTGGACCTGGACACGCCCCCTCAGACGGCGGCGCTGCTCAGCCACAAGTTCCACCCGTACCGCCACCCGCCTTACCACCACCCGCTCCACACACACCGCCTGCAGGCAGCCGTCACCGTGCACAGTGTGGACGCAGAGTGCTGATCCTAAAcctccattcccccccccccccccccccccaggcctgGGCTCTCCTCCACTCCCACCGGCCCTCTTCCTCCACCTGGCTACGCCTCGCTACATTGGCGGGGTCCCTGACATGCAATGCTACCACTACCGTCACCTCCAGACTCCACCACCATGTAGGCTCCCACTGGGCCCAGCCAGGGTGAGGGGAGGTGGGCTGAGAGAGAATAGGGCAgacccccctcttccccccctgTTGGAAGTTTCCTTAGAAGATCATAGACTGTAGGAGGAACACTAGCCCTTGAGAGCTCAGCTCAGAACATGGGGGTCTGAACTTGTTTAAAAGTGTAAACAGCGATAAAAAAGGAAGGATTATTAAAGGATTATTTTTCTACTATTTATTGAACCGGATTTGAGATGGATCAGAGTAGAGACTGACCATGTGGCTGGAGCTGAACTGAAAGGACTCTGGTCGCTAAGGTAACCAGAGTGGCTGATCATGGACCACAGAGAGCCTCTCCTGCACACTGCCCTCGCTTTCTGTCGAGGATGCATCGAGGCAGTGGTTATTCACGCTATCGTTTTTATTATTTTCAGAATCAGAAGTCGTTGTGATGATAAACTCTTTCCGATGACTGGACGAGCTGAATAGAAGACATTGAGAAACCCACCCACTTGTCTGAACTAGATGTGTCGTACTCCGATCACCTGGCCTACCGTCAGTCACTGGGGCTGCTGTATGACTGAATAAGGAAGGGGCATGCAAGGACCCTGGCAGAATGACTCAGACACAGGAAGTACAGTGCTCATGCTTTGGTGTCCTGTTATCTGCCTGAAAAGAAAGGTAATGATGAGGCTTGGTGGAATTGGTTGGTCTGTCTTCGGACCTCACACTGGCATCTGGACCTGGTTGACCAAGCtatggctctctctgtctctatgcctctctctgtctctatgcctGAGTGGGACCTATTAGTGTtgaacagaggtgtgtgtgtgtgtgtgtgtgtgagagagagagctgttgtgGCTGCATCcatttttatgttccttttgcGGTAAATTAATAATATTAACACTCTGCGTGTGCTgcagtcatggtgtgtgtgtgtgtgtacactctgCGTGTGCTacagtcatggtgtgtgtgtgtgtacactctgCGTGTGCTACAGTCATGGTGTGTGTACACTCTGCGTGTGCTacagtcatggtgtgtgtgtgtgtacactctgCGTGTGCTacagtcatggtgtgtgtgtgtgtgtgcactgtgtgtgctacagtcatggtgtgtgtgtacactctgCGTGTGCTacagtcatggtgtgtgt

Function

NR:

description
PREDICTED: VWFA and cache domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968893.1 True 5464 mRNA 0.55 26 38384191 38464591
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521000 LOC106584032 coding downstream 6074 38287397 ~ 38378117 (-)
LOC110521798 LOC106584033 coding downstream 162257 38216927 ~ 38221934 (-)
LOC110521797 dnajc6 coding downstream 170698 38152766 ~ 38213493 (-)
LOC110521795 LOC106584036 coding downstream 263113 38045531 ~ 38121078 (-)
LOC118945821 LOC106584037 coding downstream 372360 37923846 ~ 38011831 (-)
LOC110521804 LOC106584030 coding upstream 49391 38513982 ~ 38710061 (-)
LOC110521805 pgm1 coding upstream 282851 38747442 ~ 38759963 (-)
LOC118945819 NA coding upstream 310939 38775530 ~ 38780089 (-)
LOC110521806 NA coding upstream 374313 38838904 ~ 38856693 (-)
LOC110521808 LOC106584029 coding upstream 397890 38862481 ~ 38864063 (-)
G2232387 NA non-coding downstream 34960 38341739 ~ 38349231 (-)
G2232342 NA non-coding downstream 182076 38201621 ~ 38202115 (-)
G2232321 NA non-coding downstream 227205 38156586 ~ 38156986 (-)
G2232499 NA non-coding upstream 47839 38512430 ~ 38512629 (-)
G2232670 NA non-coding upstream 55672 38520263 ~ 38523945 (-)
G2232674 NA non-coding upstream 60458 38525049 ~ 38525251 (-)
G2232675 NA non-coding upstream 62391 38526982 ~ 38527194 (-)
LOC110521791 LOC106584041 other downstream 861185 37498832 ~ 37523064 (-)
LOC110521777 LOC106584061 other downstream 1859394 36520352 ~ 36541228 (-)
G2229647 NA other downstream 2169806 36213146 ~ 36214385 (-)
G2229175 NA other downstream 2584834 35798804 ~ 35799357 (-)
G2227801 NA other downstream 3841572 34542217 ~ 34542619 (-)
G2232820 NA other upstream 300831 38765422 ~ 38767903 (-)
G2234611 NA other upstream 1492324 39956915 ~ 39993914 (-)
G2234837 NA other upstream 1821063 40285654 ~ 40286282 (-)
G2237502 NA other upstream 3816165 42280756 ~ 42281362 (-)

Expression

LOC110521803(LOC106584031) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110521803(LOC106584031) Expression in each Bioproject

Bar chart with 21 bars.
LOC110521803(LOC106584031) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network