LOC110521807


Basic Information

Item Value
gene id LOC110521807
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 38833784 ~ 38838725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473217.2
TCGTGTCATGGAGCCTGCCTGACGGAGGCATCGTTCTGCTGCCCAATGTAAAATGTTTGTTTAGACTTGACGCTTGTGGCATTCAGGCGCTGGGTTCACGTGCTAAATGCATGGAGAGGTGTAAGAAGCTGTGTTGAAAAGGGTAACTGCTTTGTCATGCTGACTGCGTTCTTCTGGACCTGCATCACATCTATAGCTATTTTTACTTATTTAGCAGACGTGACTGACAACTCAGTTATGACCAGTAGGCTACATTTAAGAGTGCACTCAAGCGCTTTATATTTAGTCAActgggcaaaactggttgaatcaacgttgtgtCCACATAATTACAACAACAAGAATCTACgcgatgacgttgaatcaacgtggacaaccaattggatttgcaaaaagtcatcaacATATTGTCTGGCAGCTCCTCTGATTTGATGAAATCCATAATGGCCTTATAAAAGTTACCGAGGGCAACTGGAAtagctactctctcctcttcctcggAGATGGCCGGTTGATGAATATAGAACCCAAGCTGTCAGTTGTGAGGCGGAGAGACGTCTCGGAGGTTGCCTGTCAGTCATTGGGGGAACGTGTCAGAAAGTGAAAAGGCAGCGTTAAGACGTCAGACACATTTACATTGAGCCCTGTCTGCTGGAGAAAGCCTCTCCCTCGCCAGTGACAAATGTTGATTCTACAATAACGGCCGAGACGCAGCGCTGCAAAAATCTTTTTCTTTCAGCGAGCGAACCCCCTCGTCCTATTAGACCTGATGCAGTGTGAAATCCACCCTCACCATTTCCTCTAGCTTCCTGGAAAAGTAAAGTAACATGAATATGGGCTCCGAGGAGAGGCTACAATTTTCACGTACGTGtacacacactcaggcacacaCTTCAGTCTCCGGCTCTTTATTTGTCTGTGCCTGGGAAGGCCGAGGCCTCTTGCAGCCCAAGCGACCTAAGCAACAGCTGGTGTGCACAGACACATTTCCTATTTCTGCCCAAGGTGGATCATATAACTCTCACTTTATCACCCTTGGAGGCCATGTGAAGGACAAAATGAGCACGCCCATAAACAAAACTAATGTTTTCATACTGGCCCTCTGGAGGTGGTAGAAGGGGCCCTTGGCGAGCCaacacccccccaccaccactcccGCTAATCCAACCCACCTCCGGCTTGGCTCCTACCCATATCAACCTAGACCTCGACCCCACCAGCCCTTTCCTCCTCGAGGGTCCCACTTTCCTTCGGTCTCACCCCCGTCTCCAGCCCACTACCCATCATGACACAGGCCACTTAGGCCAGCACTATGGCGATGCTTTGAATGTGGTGCCTGAATTTATGAATTTATACAATTTTCTATGTCATTTCTAGTCATAAATGCAATAGGCCTAGTATGCATTTATGAAAATGACAGCGTTTTGGTAATGGCCATAGACGTTTGTACTTGTTTTTTTTAACTCCACATCTTCATCTGTTGTCCCCTTCCTACCAGTCCTTCCACAGTAGTACTTCTAAAGGCACAGGCCTCTGGATATCTCGCCCTTCCCTCTCCTATCTCGAGTGTTATTGGCTGCAGAGCCAGCGGCTGCAGATACACAGCATAGCAGCCGGCCCTCAGTGACCCGATAACATTTATCGTtgtaatggatttttttttatgcCTGTCATTAACTCACAGGCAGAGGGGGAAAAAGATTGCttgtaccattttttttctgtggTATTTCGACTTTATGACATTATGTTCAGATATGTAATCTTCCATCATCCTAGTTTTAGGGCCTGTCTGACCTGTCACTGCTTTCTGTGTTTAAATGCATAGCCCTTTGTGTGCTGTGTGGACTCTCCTTGTATCTAGCTATTGTAATGAATATTTTATGAAGCTAAATTAAAATGGTTGAAAGACA
>XR_005040978.1
CTGTATATTATTTTAGTGAAACTTTAAGCCTGCTTGCAGAGCTGTATATTATTTTAGTGAAACTTTAAGCCTGCTTGCAGAGCTGTATATTATTTTAGTGAAACTTTAAGCCTGCTTGCAGAGCTGTATATTATTTTAGTGAAACTTTAAGCCTGCTTGCAGAGCTGTATATTATTTTAGTGAAACTTTAAGCCTGCTTGCAGAGCTGTATATTATTTTAGTGAAACTTTAAGCCTGCTTGCAGAGCTGCAGCCTTTAGTTCGATCGCCCCCAGAGGCTTCAGGCTACGCACTCCTTCAGAGATGATTTCTGACACAGACGATGTCGTTGTATTTTCCAGTTCTCCATGTGAAGGAGAACTATGATTTTACTTTATTGTCAATCAATTAGATATTGTCTGGCAGCTCCTCTGATTTGATGAAATCCATAATGGCCTTATAAAAGTTACCGAGGGCAACTGGAAtagctactctctcctcttcctcggAGATGGCCGGTTGATGAATATAGAACCCAAGCTGTCAGTTGTGAGGCGGAGAGACGTCTCGGAGGTTGCCTGTCAGTCATTGGGGGAACGTGTCAGAAAGTGAAAAGGCAGCGTTAAGACGTCAGACACATTTACATTGAGCCCTGTCTGCTGGAGAAAGCCTCTCCCTCGCCAGTGACAAATGTTGATTCTACAATAACGGCCGAGACGCAGCGCTGCAAAAATCTTTTTCTTTCAGCGAGCGAACCCCCTCGTCCTATTAGACCTGATGCAGTGTGAAATCCACCCTCACCATTTCCTCTAGCTTCCTGGAAAAGTAAAGTAACATGAATATGGGCTCCGAGGAGAGGCTACAATTTTCACGTACGTGtacacacactcaggcacacaCTTCAGTCTCCGGCTCTTTATTTGTCTGTGCCTGGGAAGGCCGAGGCCTCTTGCAGCCCAAGCGACCTAAGCAACAGCTGGTGTGCACAGACACATTTCCTATTTCTGCCCAAGGTGGATCATATAACTCTCACTTTATCACCCTTGGAGGCCATGTGAAGGACAAAATGAGCACGCCCATAAACAAAACTAATGTTTTCATACTGGCCCTCTGGAGGTGGTAGAAGGGGCCCTTGGCGAGCCaacacccccccaccaccactcccGCTAATCCAACCCACCTCCGGCTTGGCTCCTACCCATATCAACCTAGACCTCGACCCCACCAGCCCTTTCCTCCTCGAGGGTCCCACTTTCCTTCGGTCTCACCCCCGTCTCCAGCCCACTACCCATCATGACACAGGCCACTTAGGCCAGCACTATGGCGATGCTTTGAATGTGGTGCCTGAATTTATGAATTTATACAATTTTCTATGTCATTTCTAGTCATAAATGCAATAGGCCTAGTATGCATTTATGAAAATGACAGCGTTTTGGTAATGGCCATAGACGTTTGTACTTGTTTTTTTTAACTCCACATCTTCATCTGTTGTCCCCTTCCTACCAGTCCTTCCACAGTAGTACTTCTAAAGGCACAGGCCTCTGGATATCTCGCCCTTCCCTCTCCTATCTCGAGTGTTATTGGCTGCAGAGCCAGCGGCTGCAGATACACAGCATAGCAGCCGGCCCTCAGTGACCCGATAACATTTATCGTtgtaatggatttttttttatgcCTGTCATTAACTCACAGGCAGAGGGGGAAAAAGATTGCttgtaccattttttttctgtggTATTTCGACTTTATGACATTATGTTCAGATATGTAATCTTCCATCATCCTAGTTTTAGGGCCTGTCTGACCTGTCACTGCTTTCTGTGTTTAAATGCATAGCCCTTTGTGTGCTGTGTGGACTCTCCTTGTATCTAGCTATTGTAATGAATATTTTATGAAGCTAAATTAAAATGGTTGAAAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473217.2 False 1913 mRNA 0.46 3 38833784 38838725
XR_005040978.1 True 1899 mRNA 0.45 3 38836538 38838725

Neighbor

gene id symbol gene type direction distance location
LOC110521800 LOC100286690 coding upstream 548687 38230452 ~ 38285097 (+)
LOC118945881 NA coding upstream 572399 38261239 ~ 38261385 (+)
LOC110521799 NA coding upstream 608981 38223112 ~ 38224803 (+)
LOC118945789 NA coding upstream 777144 38038367 ~ 38056640 (+)
insl5a rel3 coding upstream 1246783 37584989 ~ 37587002 (+)
LOC110521001 LOC106584026 coding downstream 278759 39117484 ~ 39202411 (+)
LOC110521810 LOC106584025 coding downstream 399885 39238610 ~ 39332571 (+)
LOC110521814 dmrt2b coding downstream 874299 39713024 ~ 39722927 (+)
LOC110521815 fam183a coding downstream 921176 39759901 ~ 39761629 (+)
LOC110521003 LOC106584022 coding downstream 933721 39772446 ~ 39799482 (+)
G2232859 NA non-coding upstream 11321 38821528 ~ 38822463 (+)
G2232660 NA non-coding upstream 44006 38789534 ~ 38789778 (+)
G2232655 NA non-coding upstream 52960 38780581 ~ 38780824 (+)
G2232648 NA non-coding upstream 62227 38771334 ~ 38771557 (+)
G2232583 pgm1 non-coding upstream 83328 38747444 ~ 38750456 (+)
G2232873 NA non-coding downstream 1862 38840587 ~ 38844285 (+)
G2233172 NA non-coding downstream 494487 39333212 ~ 39333482 (+)
G2233192 NA non-coding downstream 533100 39371825 ~ 39372175 (+)
G2232855 LOC100380853 other upstream 20405 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 43109 38790315 ~ 38790675 (+)
G2231371 NA other upstream 496803 38315783 ~ 38336981 (+)
LOC110521770 igfbp-1a2 other upstream 3030816 35800643 ~ 35805071 (+)
LOC110521817 LOC106584021 other downstream 961548 39800038 ~ 39812756 (+)
pik3r3b LOC106584012 other downstream 1304896 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 other downstream 2263713 41101017 ~ 41158001 (+)
G2236045 NA other downstream 2546935 41385660 ~ 41385993 (+)

Expression


Co-expression Network