LOC110521815 (fam183a)


Basic Information

Item Value
gene id LOC110521815
gene name fam183a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 39759901 ~ 39761629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599698.2
ATTCTGTTTACTGTTGCTAGGCAACGAGAGAACTAAAGAAGACTTGTTGCGATTGAATGTTAGTTTGTATTTCGAAGGCTGGCTTTCTACGAAGTTGCATACTACGTGGTCTCCCGTGTTCTCTCTGGATTGCGTCCGAATTTACACGAACCAGGATGGCAGCGGCTAAACAACCAAAAGAAAAGCACCCTGTGGATATTGTTCATCAGAACGCAATTCACGTCGAGACCATAAAGAAGGAGAATAGGAGCCAACGATTGTACACGCTATTTAGCATAAACCCGTACAAAAGACTTCATGTTTTGACTGACAAGCCTATGGCCAGCCCCACCCACGACAACATAGAGGAGGATCCTGCTTTCCTGAAGATCATCCACAGGGCTTGTTTGGAACCAACCAAGAAATACACTCACCCCCAAACGGAGAGCCAAGAGATAGGCTGGACATCCAGACCTCTGATTGTTTCAGATCGCAGTGATAGGAGACTGAACTGGCCACGGCAGAACTCTGAGATCACCAAGTACATGGATGCAGCATGGCGTCTGAAAGAACAGACACAGAACCTGGGCTAGATCTCCGGCCTACTACAAGCCTCAATTTGGATAAACTACCGGATCATTGGCCTCTTTGCTGGATATCGATTGAGAAATATTAAATGGAAACATGGCTATGAAGAATATTGCTTTACTGTCCCAAGCAAACAACTGGTTGcagacagacctactgtataatgTCAAACACCATAACGTCTTTCAGAAAATAAATATTGAACTAGTACAAA
>XM_021599699.2
GAGACCATAAAGAAGGAGAATAGGAGCCAACGATTGTACACGCTATTTAGCATAAACCCGTACAAAAGACGTAAGCACATTCGACCGCCGTAGAAACTTCATGTTTTGACTGACAAGCCTATGGCCAGCCCCACCCACGACAACATAGAGGAGGATCCTGCTTTCCTGAAGATCATCCACAGGGCTTGTTTGGAACCAACCAAGAAATACACTCACCCCCAAACGGAGAGCCAAGAGATAGGCTGGACATCCAGACCTCTGATTGTTTCAGATCGCAGTGATAGGAGACTGAACTGGCCACGGCAGAACTCTGAGATCACCAAGTACATGGATGCAGCATGGCGTCTGAAAGAACAGACACAGAACCTGGGCTAGATCTCCGGCCTACTACAAGCCTCAATTTGGATAAACTACCGGATCATTGGCCTCTTTGCTGGATATCGATTGAGAAATATTAAATGGAAACATGGCTATGAAGAATATTGCTTTACTGTCCCAAGCAAACAACTGGTTGcagacagacctactgtataatgTCAAACACCATAACGTCTTTCAGAAAATAAATATTGAACTAGTACAAA

Function

symbol description
fam183a Predicted to be active in ciliary base. Orthologous to several human genes including FAM183A (family with sequence similarity 183 member A).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599698.2 False 781 mRNA 0.44 4 39759901 39761629
XM_021599699.2 True 584 mRNA 0.45 4 39760125 39761629

Neighbor

gene id symbol gene type direction distance location
LOC110521814 dmrt2b coding upstream 36974 39713024 ~ 39722927 (+)
LOC110521810 LOC106584025 coding upstream 427330 39238610 ~ 39332571 (+)
LOC110521001 LOC106584026 coding upstream 557490 39117484 ~ 39202411 (+)
LOC110521807 NA coding upstream 921176 38833784 ~ 38838725 (+)
LOC110521800 LOC100286690 coding upstream 1474804 38230452 ~ 38285097 (+)
LOC110521003 LOC106584022 coding downstream 10817 39772446 ~ 39799482 (+)
trnaa-ugc-194 NA coding downstream 27528 39789157 ~ 39789229 (+)
LOC110521817 LOC106584021 coding downstream 38409 39800038 ~ 39812756 (+)
LOC110521820 LOC106584018 coding downstream 116216 39877845 ~ 39906318 (+)
LOC110521821 LOC106584017 coding downstream 149888 39911517 ~ 39918494 (+)
G2233878 NA non-coding upstream 116034 39643647 ~ 39643867 (+)
G2233874 NA non-coding upstream 118666 39640921 ~ 39641235 (+)
G2233867 NA non-coding upstream 124417 39635264 ~ 39635484 (+)
G2233859 NA non-coding upstream 131934 39627554 ~ 39627967 (+)
G2233304 NA non-coding upstream 147002 39563375 ~ 39612899 (+)
G2234002 LOC106584020 non-coding downstream 88968 39850597 ~ 39852270 (+)
G2234003 LOC106584020 non-coding downstream 90821 39852450 ~ 39855097 (+)
G2234031 NA non-coding downstream 149369 39910998 ~ 39911462 (+)
G2234224 NA non-coding downstream 167683 39929312 ~ 39929520 (+)
G2232855 LOC100380853 other upstream 946522 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 969226 38790315 ~ 38790675 (+)
G2231371 NA other upstream 1422920 38315783 ~ 38336981 (+)
insl5a rel3 other upstream 2172899 37584989 ~ 37587002 (+)
pik3r3b LOC106584012 other downstream 381992 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 other downstream 1340809 41101017 ~ 41158001 (+)
G2236045 NA other downstream 1624031 41385660 ~ 41385993 (+)
LOC110521840 LOC106583968 other downstream 2788691 42548328 ~ 42554269 (+)

Expression


Co-expression Network