LOC110521003 (LOC106584022)


Basic Information

Item Value
gene id LOC110521003
gene name LOC106584022
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 39772446 ~ 39799482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598443.2
TCTTCTGTCCTTTCACTGGCAGATTTTAGTCTGCAGCTTTGATTTGACAACACTCTGATGATGTCTGCAGTGGTGGCCCAGTGCCACTACAGCTTTGGTTTGCAGAGGGGCGTGGCCAATAACCTGTTCTACTTTGATGAGCAGACTGTCATCTTCCCATCCGGGAATAACTGTGTTCGTTATAACATTGATCAGAAATGGCAGAGGTTCATCCCAGGTTTGGAGAGGAGTCAGGGAATGTATGCCCTGGCTATCAGCTCAAACCGCCGCTACCTGGCGGTGTCGGAGCGTGGAGACAGGGCCACCATTACGGTGTACGACCTGCAGCACGAGCAGAGCCGGAAGAGGAAGGTGCTGAATGGAGGGGACATCCATGTCCAGGAGTTTGTCTCCATGGCCTTCTCCACTGACTCCAAGTACTTCATTGGCCAATCAGGAGCGCCAGACTACACCCTCTTCTACTGGATGTGGGAGAAGCAGAAGGTCATGGCCATGGTGAAGACCACTGTGGCCACTAATCCAGTCAACCAGGTCAGCTTGAACCCATACGACAACACCCAGATCTGTGTGAGTGGGAATGGGGTCTTCAAGCTGTTCCGCTATGCAGAGGGGGTTCTGAAGCAGTCCACCTTCCATAAGCAAGAGACCCATAACTTCCTATCCCATGCCTGGATGTCTGAGGAGAGGGTGATTGCAGGGACAGAAGCTGGGAGGCTGATGGTGTTTGAGTCTGGAGACCTCCGATGGGACATGAGTGTGACCACCAAGACCACCATGTCACAGGACCCAGACAGtgcaGAGGGAAATGATGAAGAGACCCCTCAGTTGCCACGGGTTACAGTCATCACAGCTTACTCGAAAGGCTTTGCCTGCTCGGCCGGTCCTGGGACTGTGTATCTGTTTGAGAGAACCGACGACAAGGACAACTACAGGAAGACCAGGGAGATCAGGaTCCCCCCAGACCAGTGCAGTCACGAGCCCAGCCATGCAGAGCAGCAGCAGATTGTCTCTCTGGTCATCAGTCcatcagaggagacagtagtgaCCAGCACAGATCGTGGTCAGCTCTACAGTATCACCCTGTCCTCTGCTGAGATGAGCAAGGGGGAGCAGGTCCAGTTTGAGTTCCTGTCCCACTCTTTCCACTCTGGGCCTATCACCGGCCTGTCCGTCTGCATCCGCAAGCCCATCATCGCCACCTGCTCCCTGGACCAGTCTGTACGCATTTGGAACGTTGAGACCAACACCCTCGAGCTGTATAAGGAGTTCCAGGAGGAGGCGTTCAGCATCGCCCTCCACCCGTTTGGCCTGTTTGTCATGGTGGGCTTCTCTGACAAGCTGCGACTCATGAACCTGCTCATAGACGACGTCAGGACCTTCAAGGAGTTCACCGTGCGAGCCTGTAGAGAGTGTGCCTTCAGTCACGGAGGACACCTGTTTGCTGCGGTCAATGGAAACATCATCCACATCTACTCCACCACTACGTTCGAGAACGTCCTCAACCTCAAAGGACACAATGGGAAGGTGCGCTCCATAGCCTGGAGTGGTGATGACAGCAGGCTGGTGTCGTGTGGTATGGAGGGGGCTGTGTACGAGTGGAACACCCTGACCAGCAAGCGGGAGTCGGAGAGCGTCCTCAAGTCCTGCAGCTACACCAGCGTCACCATCTCCCCTGACGCCAAGACTATCTTTGCCGTGGGGACCGACTGTACCCTGAAAGAGATCCAGGCCTGTCAAatccTACGTGAAGTGCCCGCTGAAGATGTGGCTTACACCACCATCGCTATGTCCCGTTCTGGGCGCACGCTCTTCACTGGGACCTCCATTGGAACCATCAGGGCCATCAAGTACCCCCTGTCCACCCAGAAGGACTGGATCGAGTACCAGGCCCACTCTTCACCTGTCACCAAGATGGTGATCACTTTTGATGACCAGTACCTACTGACGGTTTCTGAGGACGGCTGTCTGCTCATCTGGAAGATCATAGACAAGGAGGGCCGCGGCCTGAAGAGAGACAAGGAGATCACCTACGCTGAGGAGATCCTCATCACCAAGTCAGACCTGGAGGAGAAGAACCAGGTGATGTTAGAGCTGAAGACACGTGTGGAGGAGCTGAAGATGGAGAATGAGTACCAGCTCCGTCTGAAGGACATGAACTACAACGAAAAGACCAAGGAGCTGTCAACTACATTTGTTCAGCAGATGGAGTCGCTCAAGACCAACATACAGatcctgaagacagagagagacaatatgGAGGTAGCTAATCAGGAGACCATGTTCGAGGTCATGGAGAAACACTCCAAAGAGCTGCAGGATATGGAATCGGCCAACAGTCAGAAGCTGATGCTGGAATATGAGAAGTACCAGGAGCTGCAGTTCAAGTCTCAGCAGATGCAGCAGGACTACGAAAAGCAGCTGCAGCAGATGGACGAGAGCAAGACTGCTGCCCTGGAGGAGCTCACCCTCTACTACGAGGGAAAGATGCAGGAGAAACTACTGGTGCTGGAGCAGtgccaggAGGAGTCTCGTATCCAGGCGAGGGAGTTTGAGGAGAGCAGGAAGCAGATGGAGGAGGATGGGGACAGGGAGATCCAGGACATCAGGGTCCGCTACGAGAGGTGGCTGAGGGACGAGAGGGAGACCAACATGCGCATGAAGAGAGACACCGGCATCATGAAGAAGAAGttcaGCAGCCTCCAGAAGGATATAGACAACAGCAACGTGGAGATGGAGAGGATGAAGTTGGAGCAGCAGAAGCTACAGGCCATCGTCAAGTCCTTGGAAAAGGACATCCTGGCTCTGAAGAAAGCGATCCAGGAGAGGGACGAGACCATCCAAGACAAGGAGAAACGCATCTATGATCTGAAGAAGAAGAACCAGGAGCTGGAGAAGTTTAAATTTGTCCTGGACTACAAGATCAAAGAGCTGAAGAAACAAATAGAGCCCAGAGAGAATGATATCAAGGAGATGAAGGAGCAGATCCACGAGATGGAGGAGGAGCTGGATACCTTCCACAAGAAGAACACTCAGGGAGAGCTGGACATCGCTGAGCTGAAGCTCAAACTCACCACCACTGACAAGGAAATGCACAAGGGCCTGCAGAAGGTGAGAGATGTGGAGGCCCTGGTACGCAGGTTCAAGACGGACCTCCATAACTGTGTGGGGTTCATCCAAGAGCCCAAGAGGCTGAAGGAGAGCATCAGAGACCTGTATGACCGCTACGCACAGCAGAGTGACGTGCTGGATAAAGTTAGTGTGGACCCAAACGTTCAGATGGAGTACGCTAGGCAAAGGGACCACCTGGAGAGGAACGTGGCGTCCCTGAAGAGGAAGCTGGCCCAAGACAGCGTGGTCCACCATGCTGACAACGTCAAGATCATGCAGGAGAACGTGACTCTGATCAGTGAGGTCAACGACCTGCGGCGGCAGCTGCATCTGGCGGACTCCCAGGTCCATGACTACAAGAGTATGATGGGAAAGAAGGGCCTGAAGCAGACCAACACACTCAAAGCCCTGCTGTCTCCCAGGGCCAACCCCAGTAACATGGTGGTCCGTCTGAATGAGGAGGACAAAGGGGACCGCATCATCCAGCTGCAGCGCCTAGAGAtccagagactgagagaggagatACAGGTCCTGATGAAGATACACCCCTACAGACCCCCCTCCACCGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccacccctacagACCCACCTCCATCGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccaccaccaccacacctacagacccacctccACCGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccaccacccctacagACCCCACTCCACTGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccaccaccaccacacctacagacccacctccACCGCCAAGCTACCCTCCCTCCAAACCAACAcataaccatcaccaccaccaccacacctacagacccacctccATTGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccacccctacagACCCACCTCCATCGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccaccaccaccacacctacagacccacctccACTGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccacccctacagACCCCACTCCACTGCCAAGCTACCCTCCCTCCAAACCAACAcataaccatcaccaccacccctacAGACCCCACTCCACTGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccaccaccaccacccctacagACCCCACTCCACTGCCAAGCTACCCTCCCTCCAAACCAAcacataaccaccaccaccacccctacagACCCCACTCCACTGCCAAACTACCCTCCAAACCAACAcataaccaccatcaccacccctaCAGACCCCATCCACCGCCAAGCTACCCTCCCTCCAAACCAAtacataaccaccaccaccacccctacagACCCCATCCACCGCCAAGCTACCCTCCCTCCAAACCAATACATAACCACCACCCTCTCTCCAAACCAAtacataaccaccaccaccaccctctctCCAAACCAATACATAACCtcctcaccaccactaccactccCCCAACACACAGACCCATGCAGTATAAGACCTCCACATCAtagtaaaaataatttaaagaAAATGTTTGCATATTTAAAGTGCCTTTTAGCAGAAGTAATCATTaatggcatttttttttttaaagcaaattgGAAATAAAAAGTAGAACAATTCCTATTTGAGTTTttctacatattttttttatgagaTGGGGCCCATTGGAATTTTCAAAAGTGAATGGAGGCTTTTCTTGTCAGGGTGGATCAAATCAATAAGCCATTGTGTCTGACTGGAAATGATGAACGTTTTATGACAAGCTATTCATTAACAAGAACATTGACATTGTTGGGTATTGTTCATCAAAAACCGTTTTCACCATATTGATTCCATATTGTATAGGCTTGTCAGTAGCCTTTTTGTGTTTTGATTGATGCATGTGGTGTGCATATTTAACGGGTCTGCTCGGTGAAAGGGTATTCCTTTTTACGTTACCGTAAAAAAACAAGACA

Function

NR:

description
cilia- and flagella-associated protein 57-like, partial

GO: NA

KEGG:

id description
K24729 CFAP57, WDR65; cilia- and flagella-associated protein 57

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598443.2 True 5174 mRNA 0.53 21 39772446 39799482

Neighbor

gene id symbol gene type direction distance location
LOC110521815 fam183a coding upstream 10817 39759901 ~ 39761629 (+)
LOC110521814 dmrt2b coding upstream 49519 39713024 ~ 39722927 (+)
LOC110521810 LOC106584025 coding upstream 439875 39238610 ~ 39332571 (+)
LOC110521001 LOC106584026 coding upstream 570035 39117484 ~ 39202411 (+)
LOC110521807 NA coding upstream 933721 38833784 ~ 38838725 (+)
LOC110521817 LOC106584021 coding downstream 556 39800038 ~ 39812756 (+)
LOC110521820 LOC106584018 coding downstream 78363 39877845 ~ 39906318 (+)
LOC110521821 LOC106584017 coding downstream 112035 39911517 ~ 39918494 (+)
LOC110521822 pr38a coding downstream 121382 39920864 ~ 39924501 (+)
LOC110521823 pomgnt1 coding downstream 131524 39931006 ~ 39957917 (+)
G2233878 NA non-coding upstream 128579 39643647 ~ 39643867 (+)
G2233874 NA non-coding upstream 131211 39640921 ~ 39641235 (+)
G2233867 NA non-coding upstream 136962 39635264 ~ 39635484 (+)
G2233859 NA non-coding upstream 144479 39627554 ~ 39627967 (+)
G2233304 NA non-coding upstream 159547 39563375 ~ 39612899 (+)
G2234002 LOC106584020 non-coding downstream 51115 39850597 ~ 39852270 (+)
G2234003 LOC106584020 non-coding downstream 52968 39852450 ~ 39855097 (+)
G2234031 NA non-coding downstream 111516 39910998 ~ 39911462 (+)
G2234224 NA non-coding downstream 129830 39929312 ~ 39929520 (+)
G2232855 LOC100380853 other upstream 959067 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 981771 38790315 ~ 38790675 (+)
G2231371 NA other upstream 1435465 38315783 ~ 38336981 (+)
insl5a rel3 other upstream 2185444 37584989 ~ 37587002 (+)
pik3r3b LOC106584012 other downstream 344139 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 other downstream 1302956 41101017 ~ 41158001 (+)
G2236045 NA other downstream 1586178 41385660 ~ 41385993 (+)
LOC110521840 LOC106583968 other downstream 2750838 42548328 ~ 42554269 (+)

Expression


Co-expression Network