LOC110521822 (pr38a)


Basic Information

Item Value
gene id LOC110521822
gene name pr38a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 39920864 ~ 39924501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599714.2
CAATCTGCCCCGGAAGTGTAAATTGTTGCACCGGAAGATATACTGTAAAAATGCGAATTCGTTTCGCACAGGAAAACATTTTCATTCCGTTTTGAGCTGTGAAGATGGCAAATAGGACGGTTAAAGATGCCAACAGTATACATGGAACAAATCCACAATACTTGGTAGAGAAAATTATTCGTACTCGAATCTATGAATCAAAATACTGGAAAGAAGAATGCTTTGGACTGACGGCTGAGCTTGTCGTTGACAAAGCCATGGCGCTGAAGTTTGTCGGTGGAGTTTATGGCGGAAATATCAAACCTACACCGTTCCTGTGTCTCACTCTGAAGATGCTGCAGATCCAGCCAGAGAAAGACATCATTGTAGAATTTATCAAAAACGAGGATTTCAAATATGTCCGCTTGCTTGGCGCCATGTACATGAGGTTGACTGGGACATCAGTGGATTGCTACAAATACCTGGAACCACTGTACAACGACTACAGAAAAATCAAGAGTCAGAACCGAAATGGGGAGTTTGAGCTGCAACACGTCGATGAGTTTATTGATGAACTGCTACACTCTGAGAGAATGTGTGACATAATCCTTCCCAGGCTTCAGAAAAGGCAGGTTCTTGAGGAGGCGGAGCTGTTAGACACACGCATCAGTGCCCTGGAAGAAGACCTGGATGAGGTGGAGACCAGcgaagaggaagatgaggaagaggagaagacagagagagttcaGACCCCAGAGCCCCACAGACGGAGTTACCGAGACAACGATCGGCCTCGCCGCTCGCCCTCTCCACGCTACAGACGCAGCAGTCGTTCACCCAGACGGAGGAGCAGATCACCTAAGAGACGAAGCCCATCCCCCAGGCGAGAACGTCACCGCAGCAAAAGCCCCCGTCGCCACCGCTCCCGAGAGAGACGTCACCGCTCAAAGTCCCCAGGGCATCACAGAAGCCACAGGCATCGCAGTCACTCCAAAACCCCAGAGAGGAGTTCAAAAAAGAGCCACAAGAAGAGTCGAAGAGGAAACGTGTGATCCACTTTGTATTTTGTTCTCTTTGATAGTTCCCTTTTCTGACTTGGACATTAATGTGGCCAAATTTGTACGGAATCCCTTGTATTTTGTTTTAGAAAGTAATTGCATTTCAAGATATTTTCAGACCATGTAGCAGAAAGAATCCATTTCAATTTTATTTCTAAAATCTGCAGCTCATATAGAATTGTCCACAACCCTATGTATCAGTGAATAAAGTTGCTTGGTGGTTTGAACATAAGACTGAGAATGTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12849 PRPF38A; pre-mRNA-splicing factor 38A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599714.2 True 1283 mRNA 0.46 10 39920864 39924501

Neighbor

gene id symbol gene type direction distance location
LOC110521821 LOC106584017 coding upstream 2370 39911517 ~ 39918494 (+)
LOC110521820 LOC106584018 coding upstream 14546 39877845 ~ 39906318 (+)
LOC110521817 LOC106584021 coding upstream 112214 39800038 ~ 39812756 (+)
LOC110521003 LOC106584022 coding upstream 121382 39772446 ~ 39799482 (+)
trnaa-ugc-194 NA coding upstream 131635 39789157 ~ 39789229 (+)
LOC110521823 pomgnt1 coding downstream 6505 39931006 ~ 39957917 (+)
LOC118945792 NA coding downstream 34796 39959297 ~ 39960096 (+)
pik3r3b LOC106584012 coding downstream 219089 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 coding downstream 1176516 41101017 ~ 41158001 (+)
LOC110521832 LOC106583970 coding downstream 1534380 41458881 ~ 41467520 (+)
G2234031 NA non-coding upstream 9402 39910998 ~ 39911462 (+)
G2234003 LOC106584020 non-coding upstream 65767 39852450 ~ 39855097 (+)
G2234002 LOC106584020 non-coding upstream 68594 39850597 ~ 39852270 (+)
G2233878 NA non-coding upstream 276997 39643647 ~ 39643867 (+)
G2234224 NA non-coding downstream 4811 39929312 ~ 39929520 (+)
G2234313 LOC100194703 non-coding downstream 175279 40099780 ~ 40100114 (+)
G2234323 NA non-coding downstream 188272 40112773 ~ 40113015 (+)
G2234330 NA non-coding downstream 200047 40124548 ~ 40124761 (+)
G2234339 NA non-coding downstream 217820 40142321 ~ 40142561 (+)
LOC110521001 LOC106584026 other upstream 744171 39117484 ~ 39202411 (+)
G2232855 LOC100380853 other upstream 1107485 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 1130189 38790315 ~ 38790675 (+)
G2231371 NA other upstream 1583883 38315783 ~ 38336981 (+)
G2236045 NA other downstream 1461159 41385660 ~ 41385993 (+)
LOC110521840 LOC106583968 other downstream 2625819 42548328 ~ 42554269 (+)
G2237341 NA other downstream 2805351 42729852 ~ 42730451 (+)

Expression


Co-expression Network