LOC118945792


Basic Information

Item Value
gene id LOC118945792
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 39959297 ~ 39960096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040910.1
caaagtagatgtcctaaccgacttgccaaaactatagttaacaatacatttgtgaagtggttaaaaaatgagttttaaatgactccaatctaagtgtatgtaaacttctgacttcaactgtacatatagaTACATCTATCTATCTGAATAAAAAGGCTccgcttattttttatttttttcattaaccTGTGTTTAAAGTGCTAGTCGTTGCAGATTAGGCACATAAGAGATATGGCACCCTATGTCCccatatactgcactacttttgaccagagccctgtgtgcCCCGGACAAAAGTCGTACACtctttagggtgccatttgcaacgTAAAGAACAATGGTTAACATCAACCCGTGAACACTAAAGTCTTGTGTCTGTTTCTGCACATATGATGGTCTCTGCACAGTGTGGTTGAGAGACATTAAGGTACTACTGGTGGAGGCTTTCTGAAATACTATCACTTTTTTGAAATGTTGGATATGTTATCAATATCTACTGTAGGGTTGAATGGTGATGAAATTGTTTGTAAAAGTAGGTATATTGTATCAGTTTTTTTGCAGAGtttttttttgtgtgtgtgtgtgtgtgtgggggggggggggggggggggtgtcgttGTCTAGCTCTACAGTCCTCTAATTTCAAAGAGAAATCTATTATAATGGAGGTTTGTCTGTTTGATAATGGTccataaacattttttttgcagtttgACTTACATGTGAAGTATTAGTCTCTCAATGAAAtgaataaatatgtttttttttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040910.1 True 770 mRNA 0.37 2 39959297 39960096

Neighbor

gene id symbol gene type direction distance location
LOC110521823 pomgnt1 coding upstream 1380 39931006 ~ 39957917 (+)
LOC110521822 pr38a coding upstream 34796 39920864 ~ 39924501 (+)
LOC110521821 LOC106584017 coding upstream 40803 39911517 ~ 39918494 (+)
LOC110521820 LOC106584018 coding upstream 52979 39877845 ~ 39906318 (+)
LOC110521817 LOC106584021 coding upstream 150647 39800038 ~ 39812756 (+)
pik3r3b LOC106584012 coding downstream 183494 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 coding downstream 1140921 41101017 ~ 41158001 (+)
LOC110521832 LOC106583970 coding downstream 1498785 41458881 ~ 41467520 (+)
LOC110520957 LOC106583970 coding downstream 1517389 41477485 ~ 41478421 (+)
LOC110521005 LOC106560551 coding downstream 2052479 42012575 ~ 42053669 (+)
G2234224 NA non-coding upstream 29777 39929312 ~ 39929520 (+)
G2234031 NA non-coding upstream 47835 39910998 ~ 39911462 (+)
G2234003 LOC106584020 non-coding upstream 104200 39852450 ~ 39855097 (+)
G2234002 LOC106584020 non-coding upstream 107027 39850597 ~ 39852270 (+)
G2234313 LOC100194703 non-coding downstream 139684 40099780 ~ 40100114 (+)
G2234323 NA non-coding downstream 152677 40112773 ~ 40113015 (+)
G2234330 NA non-coding downstream 164452 40124548 ~ 40124761 (+)
G2234339 NA non-coding downstream 182225 40142321 ~ 40142561 (+)
G2234345 NA non-coding downstream 188018 40148114 ~ 40148321 (+)
LOC110521001 LOC106584026 other upstream 782604 39117484 ~ 39202411 (+)
G2232855 LOC100380853 other upstream 1145918 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 1168622 38790315 ~ 38790675 (+)
G2231371 NA other upstream 1622316 38315783 ~ 38336981 (+)
G2236045 NA other downstream 1425564 41385660 ~ 41385993 (+)
LOC110521840 LOC106583968 other downstream 2590224 42548328 ~ 42554269 (+)
G2237341 NA other downstream 2769756 42729852 ~ 42730451 (+)

Expression


Co-expression Network