LOC110521832 (LOC106583970)


Basic Information

Item Value
gene id LOC110521832
gene name LOC106583970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41458881 ~ 41467520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124667.2
GGAATGAACAGAAGCATATCGGCGCTTTTATTTCTGTCTCTAGGCATAATATTTGTCTGCGAAGGAGGCAACCCTTGCTGCTCACAGCCATGCCAGAACCGTGGCGTTTGTACGGCCATGGGCGCCGACGACTATGAGTGCGATTGCACACGCACGGGATTTTATGGCCACAACTGCACACAACCTAAATTATTCACGTGGATTAAAGTGTCTCTGAAGCCAACCCCGAACACAGTGCATTACCTCCTCACCCACTACAAGGGGCTCTGGAACATCATCAACAGCATATCATTCCTCAGGGATGCTATCATGAGATATGTTCTGACATctcGCTCTCATCTGATTGACAGCCCCCCGACTTTCAATACAGACTATGATTATAAAAGCTGGGAAGCCTACTCAAATCTCTCCTACTACACACGCACGCTCCCTCCTCTGCCCAAGGATTGCCCAACTCCTATGGGAGTCGTAGGTAAGAAGGAGCTGCCTAATGTGGAGATGCTGGCAAAGAAGCTCCTGATCAGGAGGAAGTTTATCCCAGACCCTCAGGGCTCCAGTCTGATGTTTGCCTTCTTTGCCCAACACTTCACCCACCAGTTCTTCAAATCCGACCAGAAGATGGGGCCGGCCTTCACTAAAGCCAAGGGCCACGGCGTGGACCTGGGTCACATTTACGGTGATAACCTTGAGAGGCAACACAATCTGCGGCTCTTCAAGGATGGCAAGCTGAAGTTTCAGGTCTTGGAGGGAGAGGTGTACCCACCTACAGTGAAGGAGGTAGGGGTGGATATGCACTACCCTCCCCATGTCCCTGAGTCTCACCGCTTCGCTGTGGGTCATGAGGCATTCGGCCTGGTGCCTGGTCTTATGATGTATGCTACCATCTGGCTGAGAGAACACAACCGAGTCTGTGATGTCCTGAAGGAGGTACATCCGGACTGGGATGATGATAGGCTCTTCCAGACATCTCGCCTCATTCTCATTGGTGAGACCATCAAAATTGTGATCGAGGACTACGTGCAGCACCTGAGCGGCTACCACTTCAAGCTGAAGTTCGACCCAGAGCTTCTCTTCAAAGAGCGTTTCCAGTATCAGAACCGCATCGCATCAGAGTTCAACACCCTGTACCACTGGCACCCACTGATGCCCGACTCCTTCCACATCCAGGAGCAGGTCTACTCCTACCCACAGTTTGTCTTCAACACCTCTGTGGTCACCACACATGGAATCACCAACCTGGTGGAGTCCTTCACCAAGCAGATTGCTGGACGGGTTGCTGGAGGTCGTAATGTCCCCCCTGCAGTGCTAATGGTGGCTCTGAAGTCCATAGAGAACAGCAGACAGATGCGCTACCAGTCCCTTAATGCCTACAGGAAACGCTTCTCCATGAAGCCATACATCTCCTTCGAAGACCTCACAGggGATAAGGAGATGGCTGCAGAGCTGGAGGAGATGTATGGGCATGTGGATGCTGTGGAGCTCTACCCAGGCCTGCTGGTGGAGAAGCCAAGAACCAATGCCATCTTTGGGGAGACCATGGTGGAGATGGGTGCCCCCTACTCCCTGAAAGGCCTGATGGGAAACCCCATTTGTTCGCCAGAGTACTGGAAGCCCAGCACCTTCGGTGGGAGCATCGGCTTTAACATCATCAACACAGCGTCCCTACAGAGGCTGGTGTGCAGCAACATCAAGGGCCCCTGCCCTTTGGCATCCTTTCATGTGCCCGACGTAAAAGACAATGGATCCAATGTCAATAATTCCAGTACGGCACATTCGGGAAGTAACGATCGCAACCCCACAGTACTTCTAAGAGAAAGAACCACTGAGCTCTGATAAGACAATTCAGCATTTAAATGTATAAgcatttaatgtatttatttatgttaatatttatttaatttattgtaTTCTGGAAGCGTTATTGAGAAATGTTGTTGAGAACATTTTTTTGTAATGTCTCATTGTTTTGACATGACTTTTGTAAGTTTAAAGAAAACCAATCCTTACGTTTGGGTTATATTTATTCTAAGAGCTAATTTAATGTATTCTGTTATTTTATTGACATCAGAAATAGCACTAGCAATATTGTTTATGTTTGTCATTTTACTTTGTTTAACAACTGATACTTGAATTCAACACGTTTAGTTGACAACATGACTCTAACATTCCGTCTTAACTGCATGTTACAATGTTACATTCCACCTAACTTAGAGCTGGTTCTCCACTTATTGTGCAAGGGAAAAGCTAGTTAGGTATGTAAAGTCCATTGTACTTTGATACTCTAACCCTTAAAGTATTTTCTTTGTGTATTTTTAATCTTGAGCTGACTCCTTATTGTTCTAATAAAACACTGTCTATAATGA

Function

NR:

description
prostaglandin G/H synthase 2-like

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K11987 PTGS2, COX2; prostaglandin-endoperoxide synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124667.2 True 2363 mRNA 0.47 10 41458881 41467520

Neighbor

gene id symbol gene type direction distance location
LOC110521828 LOC106584006 coding upstream 300880 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 coding upstream 990302 40143590 ~ 40468579 (+)
LOC118945792 NA coding upstream 1498785 39959297 ~ 39960096 (+)
LOC110521823 pomgnt1 coding upstream 1500964 39931006 ~ 39957917 (+)
LOC110521822 pr38a coding upstream 1534380 39920864 ~ 39924501 (+)
LOC110520957 LOC106583970 coding downstream 9965 41477485 ~ 41478421 (+)
LOC110521005 LOC106560551 coding downstream 545055 42012575 ~ 42053669 (+)
LOC110521838 LOC106583933 coding downstream 858739 42326259 ~ 42506540 (+)
LOC110521840 LOC106583968 coding downstream 1080808 42548328 ~ 42554269 (+)
LOC110521842 LOC105011996 coding downstream 1188636 42656156 ~ 42664378 (+)
G2236056 LOC106583972 non-coding upstream 35287 41422760 ~ 41423594 (+)
G2235948 NA non-coding upstream 150508 41308102 ~ 41308373 (+)
G2235936 NA non-coding upstream 157589 41300954 ~ 41301292 (+)
G2235584 LOC106584002 non-coding upstream 177540 41267894 ~ 41281341 (+)
G2236181 NA non-coding downstream 27997 41495517 ~ 41495787 (+)
G2236226 NA non-coding downstream 84991 41552511 ~ 41553042 (+)
G2236227 NA non-coding downstream 85565 41553085 ~ 41554453 (+)
G2236228 NA non-coding downstream 86943 41554463 ~ 41554733 (+)
G2236232 NA non-coding downstream 92835 41560355 ~ 41560600 (+)
G2236045 NA other upstream 72888 41385660 ~ 41385993 (+)
LOC110521817 LOC106584021 other upstream 1650831 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 2282188 39117484 ~ 39202411 (+)
G2237341 NA other downstream 1262332 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 1973333 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 2141061 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 2932365 44399885 ~ 44427686 (+)

Expression


Co-expression Network