LOC110521833 (LOC106583974)


Basic Information

Item Value
gene id LOC110521833
gene name LOC106583974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41564483 ~ 41585851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599740.2
AGTCAGTGTAgcagtgtctgtctgcctgcctctgcTTCCACGCTACAGCTGCTACTTCTCCTCCCGCTGCAGAACAACGGAGCCCAgccgagaggagaggagaggagaggagaggagctggacagagagagggagagagaaagaaaaataggAACGAGAGCTTTTTCTTCGAGATTCAGGATCATGTTCTACTGCAGCCATCCTCAGAAACCCTGAGTGGAGGGTTTTTtctcttttcctttctctctctctctctgtcagactgCCTAGCAACATGAGGGACTAGCCGCAGCACTATCACCACAGCTCGGCTCTGTCGTCCCTCAGCACTGCTTTCCTTTCCTTCAGCAGAGCAGGCTGAGGATAACAGATGCATAAAAGAGCAGTGAAGAGGAAACAAATGGCACAGTGAAGGCTGTTTTATTTTCGGGCACATTGCGTAAGGGAAGTggggacaggaggagaaagagagaaaccgGTGCGACCGTTGGAGAGATAGGAAAGGTGTAGTGCTGAGACAAGGATTGAAAAGAGGGGAGAAATAACCCTAAACCTGAAGTCTTGGtgaggcagaggaggagaagacacAGGCTGTGGAACGCACTGTGACAAATGGATGAGTGTTACACCAACAATAATACATTCAGACCCGGGCGAGGTGGATGTGTGTTGCGTGCTTAGGCAGACAGGGTGGAAGTGGACATTACCCCAGATTTCTGAGGAGAGGAGCAGTGTTGGCGTGCCGAGTGTGTCAACAGACGGCACCAGTGATCACACAGTCCGTCTGCCAGTCACATGAGGAGATAAGAGAGGTGATCCACTAAGAAGGCGACTCCAGTCTCTGATCTGAAGGAGCCCGTACCTGGAGCATGATCCTTGGTGTGTCTGCAGAGCCAGTGAAGAGCCTGGGACCGGCCTCCATGGCGACAGAGTCAGCACCCTCCTAGCTCTGCCAGGGGATGCAAGAATAGCTCGGCGAGGGGGCTCAACCATCTCCCTCCTAGCTCTGTGTGGGGCTTCAAGCAACCCCTTCCAGGGCGCATTGTAGGTCCACCAGGGGGCTCACTCCCACCCATCTGCCAGCTCAGATAACCCTCTGGCTGTTGGCAAACACATGTTTGACGTGATCGAATGTGAACGCCGCCACGCCATCCAGAGCAGCTGCAGCCCCCTGCTCCCCCTGCCTGCTGATCCACCATGCAGTGGAGACGGCGGCACTGCTGCCCCATGAAGATGACCTGGACCATGAAGCGCTCGCTCTTCCGGACCCACATGGCAGGTCTCCTGTCCCTGGCCCTCctcttcactctcttcctcttcttcagcCACCAGGACTGGCTGCCAGGCCGGACCGGGCCCCGTGACAACCCCCTGACCTACACCGTTAGGGGCTTCCGCACGGCCAAGACCGAGGCAAATCAGAGCTTGAGTCTGCGGAACCTGTGGCGGGAGACAGGCTATGTGCCTCCAAAGCCCCAGCTTAACCTCAGCTCCCAGCAGGCTGAGGCTGGCGATGGAGGGGAAGCCATGGTTGGCGTAACAGGACTAGAGAATTCGATGAGCGCCAATAACAGTTTACAGCAGGAGATGGGCGTGGGAGGGAGGCTCAATTCCCAGCCCTACCGCTACATCCTCAACGAGCCCTTCAAGTGCAGGGACAGTACCCCGTTCTTGGTGCTGCTGATTGCTGCAGAGCCAGGCCAGGTAGATGCCAGGAACGCTATCCGGCAGACGTGGAGCAATGAGAGTGTGGCCATGGGTCTAGGTTTCGTCCGACTCTTCCTGCTGGGTCTAGGGCGGAGCTCGGACAGGTACACCCAGACCGCTATTGAGGAGGAGAGCTGGGTTCACCATGACATCATCCAGCAGGACTATCAGGACACATACTACAACCTCACCATCAAAACCCTGATGGGCATGAACTGGGTGGCCACCCATTGCCCGCAGGCGCACTATGTCAtgaagacagacagtgacatgTTTGTTAACACGGAGTATCTCATCCAGAAGCTGCTGAAGCCAGAGCTCCCACCCAGACAGAGCTACTTCACTGGCTATCTGATGAGGGGCTACGCACCCAACCGCAACAAGGACAGCAAGTGGTACATGCCTCCAGAGCTGTACCCTAGCGAGAGGTACCCCATCTTCTGCTCGGGAACCGGTTATGTGTTATCTGGGGACATGGCGGAGAGGATCTATCAGGCGTCTCTGAGCATACGGAGGCTGCACCTGGAGGACGTTTACGTGGGCATATGCCTGGCCAAGCTCCGCATTGACCCCACGCCGCCGCCCAACGAGTTCCTCTTCAACCACTGGAGGGTGTCCTACTCCAGCTGTAAGTACAGCCACCTCATCACCTCCCACCAGTTCCAGCCCAACGAACTGGTCAAGTACTGGAACCACCTGCAGACCAACAAGCACAATGCATGCATCAACATGGCCAAGGAAAGGAATGGGAGGTATAGACACAGGAAGTATCACGCAGAGAGACCTCAGTGATGATAACTCTACTTACTGTGGGAAGTCTGGACAGGAAGACAAAATGGTAATGAAGCGGACAAGAAGAATGGTTGGATCTGGAAAGGGCATGTTAAGAGAGCTATACACTACCTGGGAAAGAGCAGTGTTTTTGGTATTGTGTAGAGTcaattaaaactatttttttaatTTGAGAGAGATGTTATGTATTGTAAACCTGTTAAACTCTTTTTAAAAAGGGCAGTGACGTTCCATGTTTATGTGCAATATGAAgcatgcacacaaaaaaaactgcATAGTGGGGATTCTGCCACTTTCAGGTGCAAATACAATGATCAGAGAGACAAGGCCAGTGGTTGATGGGGTTTTGTTACACAACAGGTAGGTCACTAACTGTGGGGACATTTCTGTCAAATAACTATAAACAATTAATAATATTAAGAGTATTTACATGGGATGggaaaagggaaagagagaaatgcATCACTACCTACAGAAATGATGAATATATTTATGATGTGGACCACTACTGCTGCCCTCATTCTCAATGTTTACTTTACGTAATTATCATAAAATATGAATTAAAAGGATTTACCTGTTAATAtgccatatattttttatttacaacCAAGGTGAAAGCACTCAGAATAACAACTGAGATTGTATTTTCTAAAGCTTTACATTGAGTGTGACGAGTCTGCACATGAGCAATCAATTGAATaacaactaaatgtattgaatttc

Function

NR:

description
beta-1,3-galactosyltransferase 2-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K07820 B3GALT2; beta-1,3-galactosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599740.2 True 3222 mRNA 0.51 2 41564483 41585851

Neighbor

gene id symbol gene type direction distance location
LOC110521831 LOC106583972 coding downstream 114358 41402397 ~ 41450125 (-)
LOC110521830 LOC106584002 coding downstream 272374 41261297 ~ 41292109 (-)
LOC110521829 LOC106584005 coding downstream 355718 41158478 ~ 41208765 (-)
LOC118945795 NA coding downstream 524797 41032915 ~ 41039686 (-)
LOC110521827 LOC106584008 coding downstream 537804 41016925 ~ 41026679 (-)
LOC110521004 LOC106560548 coding upstream 420343 42006194 ~ 42007233 (-)
LOC110521834 nek7 coding upstream 514744 42100595 ~ 42230862 (-)
LOC110521836 LOC106583981 coding upstream 670387 42256238 ~ 42268858 (-)
LOC110521837 NA coding upstream 708850 42294701 ~ 42312431 (-)
LOC110521839 LOC106583969 coding upstream 941077 42526928 ~ 42550858 (-)
G2236363 NA non-coding downstream 750 41562156 ~ 41563733 (-)
G2236362 NA non-coding downstream 4257 41555739 ~ 41560226 (-)
G2236397 NA non-coding downstream 15821 41548355 ~ 41548662 (-)
G2236178 NA non-coding downstream 70313 41493861 ~ 41494170 (-)
G2236053 NA non-coding downstream 164893 41398822 ~ 41399590 (-)
G2236524 NA non-coding upstream 154483 41740334 ~ 41740582 (-)
G2236755 NA non-coding upstream 326541 41912392 ~ 41912599 (-)
G2236767 NA non-coding upstream 332794 41918645 ~ 41918874 (-)
G2236776 NA non-coding upstream 334269 41920120 ~ 41920405 (-)
G2236778 NA non-coding upstream 336748 41922599 ~ 41923074 (-)
G2234837 NA other downstream 1278201 40285654 ~ 40286282 (-)
G2234611 NA other downstream 1570569 39956915 ~ 39993914 (-)
LOC110521806 NA other downstream 2707792 38838904 ~ 38856693 (-)
G2232820 NA other downstream 2796580 38765422 ~ 38767903 (-)
LOC110521791 LOC106584041 other downstream 4041477 37498832 ~ 37523064 (-)
G2237502 NA other upstream 694905 42280756 ~ 42281362 (-)
G2237814 NA other upstream 1157043 42742894 ~ 42743592 (-)
G2239635 LOC106583937 other upstream 2696285 44282136 ~ 44283368 (-)
G2240022 aldoa other upstream 3144382 44721963 ~ 44733310 (-)
LOC110521015 LOC106583894 other upstream 3383871 44950503 ~ 45003269 (-)

Expression


Co-expression Network