LOC110521004 (LOC106560548)


Basic Information

Item Value
gene id LOC110521004
gene name LOC106560548
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42006194 ~ 42007233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521004
ATGTGTGCATTCTGGCTGTCCCCAGAGTGTTGTGAGCGTCTGGTGAAGAGCGGAGCCACGCTGGTCATCTTCGGCGCTCATCCGCAGCTGCAAACGGATCATCCCCTGCATGGGGTTCATTACCTATGCCATCCAGGTCCTCCTCAACCTCTCCAAGTATGACAAGACAATCAAGGCGGTGTATGACGTAGAGAACTCTGTGGACATGCTGCTGGATCTGCTGCAGATCTACAGGGAGAAGGCAGGAGACAAGGTGCCTGACAAGGGAAGCAGCATCTTCACTAAGGCCTGCTTTCTCCTGGTCATCCTGCTGCAGAACCAGAACAGGGCTCTGGTAtggcactactactacaacaacaaccacaacatcaTGATCAGTATAATTACTTTATTTTGGAAGAGCTTTTCATACAACTAAAACAAAACATTGGTAATAACATGAAAAAGACGTGACTCGTGAAGCAAGAaaacagtttggagattatgggaaaaTTATTAGACCACAGTCGAGGACACAGCAGTTCACCTGAAACAAGACTGACTCCaaacactgttgattttatgtgcattttacatttactttaCTTTTCGCCACATTTGTTGataacaaaatcaaaaaataccctggatacattcagtaacaaggtaagaatattcctggaaaatgtggggtaggtgcacCTACcgcacattttccaggaatatttTTTATCATGTAACATAAGATAAAAAATTACaagggtgtcacgttctgaccatagttctgttattttattctttg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
K16743 ASPM, ASP; abnormal spindle-like microcephaly-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521004 True 781 mRNA 0.43 2 42006194 42007233

Neighbor

gene id symbol gene type direction distance location
LOC110521833 LOC106583974 coding downstream 420343 41564483 ~ 41585851 (-)
LOC110521831 LOC106583972 coding downstream 556069 41402397 ~ 41450125 (-)
LOC110521830 LOC106584002 coding downstream 714085 41261297 ~ 41292109 (-)
LOC110521829 LOC106584005 coding downstream 797429 41158478 ~ 41208765 (-)
LOC118945795 NA coding downstream 966508 41032915 ~ 41039686 (-)
LOC110521834 nek7 coding upstream 93362 42100595 ~ 42230862 (-)
LOC110521836 LOC106583981 coding upstream 249005 42256238 ~ 42268858 (-)
LOC110521837 NA coding upstream 287468 42294701 ~ 42312431 (-)
LOC110521839 LOC106583969 coding upstream 519695 42526928 ~ 42550858 (-)
LOC110521841 LOC106583966 coding upstream 549648 42556881 ~ 42616724 (-)
G2236865 NA non-coding downstream 15005 41990924 ~ 41991189 (-)
G2236861 NA non-coding downstream 17641 41988273 ~ 41988553 (-)
G2236797 NA non-coding downstream 66269 41939708 ~ 41939925 (-)
G2236792 NA non-coding downstream 68635 41937343 ~ 41937559 (-)
G2236786 NA non-coding downstream 72345 41933595 ~ 41933849 (-)
G2236889 NA non-coding upstream 376 42007609 ~ 42007864 (-)
G2236892 LOC106568688 non-coding upstream 5073 42012306 ~ 42012540 (-)
G2237373 NA non-coding upstream 41187 42048420 ~ 42111658 (-)
G2237359 NA non-coding upstream 86114 42093347 ~ 42098376 (-)
G2237467 NA non-coding upstream 224978 42232211 ~ 42232692 (-)
G2234837 NA other downstream 1719912 40285654 ~ 40286282 (-)
G2234611 NA other downstream 2012280 39956915 ~ 39993914 (-)
LOC110521806 NA other downstream 3149503 38838904 ~ 38856693 (-)
G2232820 NA other downstream 3238291 38765422 ~ 38767903 (-)
LOC110521791 LOC106584041 other downstream 4483188 37498832 ~ 37523064 (-)
G2237502 NA other upstream 273523 42280756 ~ 42281362 (-)
G2237814 NA other upstream 735661 42742894 ~ 42743592 (-)
G2239635 LOC106583937 other upstream 2274903 44282136 ~ 44283368 (-)
G2240022 aldoa other upstream 2723000 44721963 ~ 44733310 (-)
LOC110521015 LOC106583894 other upstream 2962489 44950503 ~ 45003269 (-)

Expression


Co-expression Network