LOC110521005 (LOC106560551)


Basic Information

Item Value
gene id LOC110521005
gene name LOC106560551
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42012575 ~ 42053669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521005
ATGGGGTATCGTGTGGCCAAAATCTTTGACGTATGGAACTTTTCCAAGAAATCAGACACTCTTTTTAAAGAGTACATCAAGACATTCTTGAGATGCAAGCAAATGGCTTCAGGCTATCCTGCATCGGTCACAGATCAAGAGAGCAAAGACAGGTGCGTCTCGCCTGAAGGCGAGGTCAGAGGTACCGGTAACGGACCAGTGTTCCACAACCCCTGCTACAGCCAGGCCATCTGTCATAGCCGTGGTGATGGCTACTCGTGTTTCTGCATGCCTGGGTTCCAGGGTGTGCGCTGCCAGATAGAGGTGAACAAGTGTGTCACAGCCCTGCAGGAACGGAGCCACCTGTATAGACAGGGTGGGCAGGTACGACTGTCTCTGCAGCCCAGGGTTTACAGATGCCACCTGTGACGTCCAGATTGACGAGTGTCAAGGGTGGGAGTTGTCATGACTACGTCAACATTTTCTCGTGTACCTGCATGTCCAGTTTCCAGGGAGACCACTGTGAAATCGAAATTGACGAGTGCCAAGACCAGCCATGCCAAAATGGGGCTCTGTGTCCTGAAGGGGTTTTAATGAGTaagacGTACAGCTGCGACTGCTCTCAGACCACCTTCATTGGGCGACACTGTGaaactcctctccctccatgcaATCCCCAGTCCTGTGTCAACAGCGCCACCTGTGTGGAGGACGAGGGGAACTATACATGTGAAGCTGgccagGGTCGTCAGTGTGAGGTGGATACATCAACGTCCAGTCTCCCTTCCCTTCCAGGTACCCTTTGTAATGAGGTAGTGGACATGTGCAACCCCAGCCCTTGTGAGAACGGGTCTCAGTGTCAGAGCCTTGTGGGGGGCTATGTGTGCCACTGCTCCCAGCAAAGCCTTGATGAGTTCCTGTATGGGGGCCGGAACTGCAGCGAAGCGTTGGTGGGCTGTGAGGGCCATGAGTGTCAGAACCAGGGCTCATGCTCTCCGTTCCTAAGCGACGGACATCATGGCTACTCCTGCCACTGCCCCCCAGGCCACACCGGGCTTCTCTGCCAGACCCCCACAGCCTTCTCCTTCGAGCAGAGCGGCTACCTGTTATTGCGGAGCCCCGTGATGTCCACAGAGGCCTCCTGCAACATCACCCTGAGTTTCCGGACAGTGCTGCCCAGGGCCGTCCTCTTCCAGCGGGGCAGTGGAAGGCTGATCCTGGGTCTGGAGCTGTTGGGGTGCCATCTGAGACTCAGCCTGAGGAGGGAGGCCTCGGCTGGGGGTAGGGCAGAGGCCCTGCAACTTAGCCAGACACTGGAGCTCCCCCTTAACGTGACTGATGGGAGGTGGCACTCTGTGGAGGCCGTGCTGGGGGACGGCCTACTCAGCCTTAGGCTCCTGGATGGCGGGGTCTGTCAGGAACAGGACTGTGAGAGGGAAGCCCAGGTTACAGATACTCTGGCTGGGACAGACTCTCCAGAGTCTCCCCTCCAGAACACCTTCATCGGTGGGGTGGTGGAGGAAGGTGTGGTTCTGGTCACGGTCCCGGCCTTCATCGGCTGTCTGCAGGACATATTTGTGAACTCCCAGCTGGTGGTTCCGGAGGAGTGGCTGAGCGACTCGGCAGTGAACATGACTATAGGCTGCAGCCACAGAGACAGATGCCAAGACAGCCCCTGTCAGAACAGAGGACAGTGCACCAACCTGTGGCAGAGCTACCAGTGCCGGTGCCCCCGGCCATATGAAGGCCAGGACTGCGCTGAGGAGTATGAGACGGCCCGCTTCGGCAATGAGGACTCTCAGAGCTACGCCGTTTTCACCATCACAGATGATGCAGGAAGTGACAtcactgtctccctctttctgcgCACACACCGCCACGCTGGCCTCTTGTTGGTGCTCGCCAATAGCACCAGCCAATACCTGCGCCTGTGGCTGGATAAGGGGCGGGTCAGAGTTCAGCTCCATAACTTTGAGACCTTGACCAGTGAGAGTTTTATTAACGATGGGGACATCCACTTTGTGAGCGTGGTTGTGGACCGTGAGCATTTGGTCCTATACGTGGCCAACCAGAAGCAGGGCTCGGTGGAGGTCAGGACGGTGGACAGTCAGATGGGGGATGTGGTGTATGTGGGGGGTCTGGCAGAGCAGAAGGCGTCATCAGCATTCGGGGGCTACTTTAAAGGCTGTATCCAGGACCTGAGGATCAACAGTGAGAGACTGCAGTTCTTCAGGCTGGACACCACAGTGACATCATATCCTCTGGTGCTCATGGCTAATGTCACGGCGGGCTGCGCTGGGGTCGACTCCTGTAGTaGGAACCCTTGTCAGAACGGGGGGATGTGCTACTCCATGTGGGATGACTTCACCTGCACCTGCCCCCACAACACTGCAGGGCGGCGCTGTGAGAAAGTCAAGTGGTGTGAGCTAGCCCCCTGCCCCGCAAAGGCGGAGTGCCGCACCCTCAACCAGGGATACGAATGCTTCTCCAGCGCTACCTTCCTTGACAACAGCAGTGTACTGTCTTACCGCGGTAATGGCCGTATCCAACGTGGCCTGGCCAGCATCACCGCCAGCCTGCGCACCCGTAAACGTCACGTCGCCATCCTGCATGCCGAGCGTGGGCCGGAGTTTGTGACGGTGTCTGTGCAGCATGGCCTTCTCTTCTTGGAGTTACAGAGTGGGGAGGGCTCGTCCACGGTGTCCCTGAGCAGCCGCGTGGGGGTCAGCGATGGGGATTGGCACAGCGTCCACCTATTCATGGTCACCCCATGGGCAGAGGTGTCCCGCTGGACCCTAGTGCTGGATGAGGAAGTGGATGAAGCTGCGAGCTCCAACAGTGAAGGGGGCAACCTGGACTTCCTCAGGGAGGGGGTGGACATCCAGCTGGGGGGGCTTGGGCCCAAGGCTGGCTGGAGCCTAGAGGGGTGCCTGGGTACTGTGGAGGTGGGGGGCATCGCCCTGCCTTACTACAGCCCCTTAGAGGTCAACCTGCCCCGGATTCAGGAGGAGCAGTTCCTTCGGACATCCCCCAACCCACCCCGTAGCGGGTGCAGTGGAGGCCCGGTGTGCCAGCCCAGCCCTTGCATGAATGGAGGTAGCTGTCAGGACCTCTGGAACCTGTTCAACTGTAGCTGTGAGGAGGGCTGGACCGCACGCCGCTGTGAGCGCAACACCGACACCTGCGCCTCCAATCCCTGTATCCATGGCAACTGCAGCATTCAGGGGCTGGCATATGAGTGTGCCTGTGAGTTTGGCTACACCGGGGTGGACTGTGAGGAGGAGGTGGATGTGTGTGAGAACCATCTATGCGCTCATGGAGGCACGTGTCTACATGGAGTGGACAAGTACGCCTGTCTGTGTGCAGAGAACTACACCGGACCTTACTGCAAtgATCGCATTGAGGAAATGCCATGGTACATAGACATCAGAAAATTTAGGCCTAAGCTGCCCGTGTCTGTCTGTGGAGATGCAGCGAGAAACTACATCTGCTTCAATGCAGGTAACTGCACTGAGAGGGACCTGTCTTGCGACTGTCTACCCGGCTTCACTGGACACCGCTGTGAGCAGGAGGTGGATGAGTGCAAGTCCAATCCCTGCCTGAACGGGGGCTACTGCCGAAACCTCATTAACaactaccactgtgtgtgtgacatgAGTTTCGCCGGGGACAATTGCCAGGTCGACGTAAagagagagagtgtGACCTCTGACCTGTTGCTGTCAGTCACACTAGTGTCTGATGTGCTGCTGCTGGCCCTGGTCAGTACCTCCGTGGGCCTGGTGGTGGCGCTGAACCGGAGGGCCATCCACGGCACCTACAGCCCCAGCCGATAGGAGAAAGAGGGATCTCGCATAGAGATGTGGACATAGCCCATCCGACACTCATGGAGAGACTCATATAGAAGACTGGGGCCAGTTCCAAACCCACCACTCAACACTGTCCTGACATTGTTCCATTGAGAGACTCATATAGGAAACACACTCACTGGCCTGGACCCAGTTTCAAACCCATCACCCAACatggcttttccaacagtcttgaaggtgttcccacatatgctgagcactagctgtttttccttcattctgcaatctaactcatcccaaaccacctc

Function

NR:

description
LOW QUALITY PROTEIN: protein crumbs homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521005 True 4096 mRNA 0.57 14 42012575 42053669

Neighbor

gene id symbol gene type direction distance location
LOC110520957 LOC106583970 coding upstream 534154 41477485 ~ 41478421 (+)
LOC110521832 LOC106583970 coding upstream 545055 41458881 ~ 41467520 (+)
LOC110521828 LOC106584006 coding upstream 854574 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 coding upstream 1543996 40143590 ~ 40468579 (+)
LOC118945792 NA coding upstream 2052479 39959297 ~ 39960096 (+)
LOC110521838 LOC106583933 coding downstream 272590 42326259 ~ 42506540 (+)
LOC110521840 LOC106583968 coding downstream 494659 42548328 ~ 42554269 (+)
LOC110521842 LOC105011996 coding downstream 602487 42656156 ~ 42664378 (+)
LOC110521843 pde6d coding downstream 632144 42685813 ~ 42692514 (+)
LOC110521844 phb2 coding downstream 640196 42693865 ~ 42705266 (+)
G2236851 NA non-coding upstream 30940 41979899 ~ 41981635 (+)
G2236804 NA non-coding upstream 66338 41945999 ~ 41946237 (+)
G2236801 NA non-coding upstream 69112 41943263 ~ 41943463 (+)
G2236793 NA non-coding upstream 74419 41937936 ~ 41938156 (+)
G2236773 NA non-coding upstream 85272 41926966 ~ 41927303 (+)
G2236956 NA non-coding downstream 39640 42093309 ~ 42101005 (+)
G2237062 NA non-coding downstream 184610 42238279 ~ 42238581 (+)
G2237063 NA non-coding downstream 184987 42238656 ~ 42238866 (+)
G2237064 NA non-coding downstream 185299 42238968 ~ 42239260 (+)
G2237067 NA non-coding downstream 188087 42241756 ~ 42242013 (+)
G2236045 NA other upstream 626582 41385660 ~ 41385993 (+)
LOC110521817 LOC106584021 other upstream 2204525 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 2835882 39117484 ~ 39202411 (+)
G2237341 NA other downstream 676183 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 1387184 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 1554912 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 2346216 44399885 ~ 44427686 (+)

Expression


Co-expression Network