LOC110521840 (LOC106583968)


Basic Information

Item Value
gene id LOC110521840
gene name LOC106583968
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42548328 ~ 42554269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599753.2
AGTGGATAGTATGGAaccatgtatgttgcattgatccaATCTGTAATACACTATGGCAGTATAGCGTATGGTTGGGCAGCCCGGACCTCATTGGAAAGGCTAGATGTCATACAGGGGCAAGGATTCAGAATATGTCGCGGGGTGTTTCGGACCACCCCACTGGCTGCACTACAGGTGGAGATGGGGGATATGCCATTGCGGATTAGGAGACAGCAGCTGGCAATGAATTATTGGGTCAACCTACAGGGACATGGGGTGTCTCATCCTGCAAAAGGGATTTTAGAAGCATGCTGGGAACATCAGCGAGAACAGAACACAAACTTTGGGTGGTTGGGCGAAGGAGATGGGACTGTATAGAAGTCCCGTGAATCAGGATTTTGTGGCCATTTACACAGATGATTCAAACGATCCAAGGATAGGATGCACTGGGTCCGCATTTGTAGTGTAGGAATGTGGGGTGGCAGTCAGGAAACGTATTACAGATCATCTGGCTGTATATACGGCAGAGGTGATGGTCATACTGTTGGCCttacagtgggtggaggaagtCAAGCCAGACAGAGAAGTTATTTGCTCTGATTCATGTGCAGTGTTGAGCAGTCTGAAGTCCTTTAGTTCACGTAGCAGACAAGACCTGCTTTATGAGGTACTACAAAGTGCAGTACTTTCATAAGGAGATGTATACTTGGAATATGGAGGAGGAATGGTGGGAAAAAGAGAGGCGGGAGgaggtctaagagagagagagggcggaagAGGGTGAGCTTGAGTCGGTTAAAAATTTCAGAaaaaagggagatggtttgttaaagaagaatggtagaaagtgtaagcagagtgagctgaagacaggaggagaaatgggAGTGAATGAGGGTGAAGTATTGGAGGTGGTAGGTGTGATGAGGTTCTCGGAGCCCGAGGCTTGCACCGAaggtcaggataaagatgagtctgtgacagtaggagtaAAGTTTAGAAAAAGTGGACCCTTGCCTTTTAGCTAATCCATTTGTGatttcagggtgggtgaaaacagagttgggtGCTGTTGAATTggtgagggtaaccagaagtggtcttgtgataattgttagtgtttctgctggtcagagggagaaGGCGCTCCGTGTTAAAATAATGGGGGCAAGAAATGTGAATGGTTTTGCTCTCAAGAAAAAAgcgccattgaaaggagtgattactggggtagcagtaaatgtaaagattgaccaactgaaggggaagattcccgGTGTTTGCGGGTGGCGTGAGTGGTGAAACAGAATAAttattgtctgttcttttgaattttgatgttgagtctggccgacaaagtgatgttaggatTTATACATTTATCATGTTCGAGCTATTATGCCGAATACATTTtattgttacaggtgtcaagcttatcggcatgtggcagcagtgtataGGAGGGAGGTtgctaggtgtgagaagtgtgcagaagggcatgagacaaaggaatgtgtggCATTGGGGGAAGTAGTGGTATGTGTTcgttgtaggggtgcccatggacCTGAGGATCAGAAATGTCCTGTAAGAGAGAGGCAGGTTTAGGTTTACAGGGTTAAAGTAGTGCagcatatgctgaggcagtgaagaaagtagaggaagatgggtcaagagggagggatcctgagaggagtggtgtttgtagtatatactgtatgtaccagcACAGAAGGATAGGCCAACAAgtgatatatgtttcagtaagattggatttattggttatcaactgtactgcagggatggaaggTAAGTCACAGAAAATtgggttgtggtggcagctgcagagaagtatttgggtgtgcgagacttgatatcagaagagttacagggtgtgctAAGTGTTGGTATAGTTTTTTTAAAGCAAAGTATAAGGGAGTTATACTCCaatctagtaggtggcggtaatgcaaacatttattggatgccaaccgcagTTAAACCTAGTCGAAGAAGTGCCTCACTGTACTTGCGGTTTTTCATGATTACAGAAGATAAAGTTGGACGCAAGAATGTATACAACAGCGTGCTTCAAATAACAAGTGACTGTGGAGGATTTCATAAACATTGGCTAGTAGACTGGAGAGCAGGTAGCTATCTAACTAGCTAAAACAGCAGTCTAACGTTCGCTGGCTTGATAAAACAGTCCATTAACTTTACCTAGCTACCTGCCACATTATCTATCCAGCTGCAAGATATTGTGCAAAGCTCAGTCTGCGTTTCGTCTTGCGACACAAAAAGGGAACATCATGGACAAGGCAGATTTCTTAAAGGGTCTCCCTGTTTACAACAAGAGGAATTTCAGCCTGTTCCATGCAGACCCTGTGTGCAAAGCATCGAACCGAAGACCGTCCGTGTACCTCCCGACATGCGAGTATCCCTCAGAACAGATCATTGTCACGGAGAAAACAAATATCCTCCTTCGCTACCTTCACCAACAGTGGGACAAAAAGAATGCAGCGAAGAAGAGGGAACAGGatcaaggagagggagggagtccagcacctccacacaaaattGCAAGGACAGATAGCCAAGAGATGAACGAGGACTCTTAGGAGTGTGTTTGTGCATCTGGAGGAAGCACATGTACAGGCACACAACAGACATGACTATAAAGACATACGAGACACTCACACTTTGACAAACAACCTGAGAAAATGTTCACCCTGGTTTGGGAAAATTAAAAAAAGtggctttttttgttgttgttaccttCAAAGAGTTTCCTGCCTTGTCTAGTGCCCTGTTTTCAGCTTCACCCCCTAGCCCTGACCACATGGGGCGCTGCAACATCTTTACACACAGTTTGCAGACCCAATACACTGAACTTCTGCCTGCCACAGCAGGGGAGGACCCAAGGATGTATATAAACTCTGGTTTGATGATGCAATGTATTGGCCGTTGATGCAATGTATTGGCcgttgagaggctttgaagccactggtcggccatattggcactctccagtaggagcagtccgccataggaattaatggaattcaacagtatttcaattaaatgtttgaaGAACAAAATGACATGCATTTCATTTCACAGTAACCCTAGTACtcaaaaaatataaacatttaatgtttagctcacataataatttaaaagtatgTATTAAAGTGTCTAATAGACTAAGTGTCAAAAACGAATGTGGCTTccacaatcttttttttttataatggagGATTACCaagatggctgtgctgaggcttcAATACAgtgccccctgtcagtcatccagggtttatacacatcattggGAAGAACCCTCCCCCTGGACTTAATGTTCAACGTGCATTATCTTCCATTCTGCTCTGGATTTGTTTGTGTTTGAAGTTTGCTGCTTTGTTTTACTGTCAATTTTAGTTCTGAGATGTTAACtaggacaagtcagttaagaacaaattctaaatgtacaatgatggccaaacccggacgatgctgggacaattgtgcgccgccctatgggactcccaatcacgactggATGGGATTCAGCCTGGATGACAAGTGACTCAACAGTATACTCGCTTAGTTTGAATTGTTGCTGCTTTCTGGCAAAGTATCCCTGTTAAACAAAAAGGATAATATGTCAAGCCAAATTGTTTTAGTCACAGGTGTTGACTACTCAGTTTGCTAGAATTGCTTTTCAATTTGTTTACAATGCAATCGATGGACCCATTAGGTATTTTAAACTCAAAAGTTATAGCACCGGTAGAACAAAGAATAGTAGCCTACATCaatgaggggaagagagaaagttgTATTCAGTATGAAGACCTACAGTGCCTCCTGAAAGTACACACCCCTTGCACATTCTTCACATTTTTGCTGCCTTAGAATTAAATCTAAAAAGGAATGAaatgggattttttttctccacctTGTAGATTATTTTTCAACCAATCAAATGTAGTCCTGTGTTGTCTTTTTATatagcaaaatgtgaagactgcaACTTGTATGTAAATATAATAGCCAGTGCCAGCTGTTAGATATTAAGGTCTTGGCTTGATATTTATCAAAATAAATGACTTTGAATCTGC
>TU2557666
AAGTGCCTCACTGTACTTGCGGTTTTTCATGATTACAGAAGATAAAGTTGGACGCAAGAATGTATACAACAGCGTGCTTCAAATAACAAGTGACTGTGGAGGATTTCATAAACATTGGCTAGTAGACTGGAGAGCAGGTAGCTATCTAACTAGCTAAAACAGCAGTCTAACGTTCGCTGGCTTGATAAAACAGTCCATTAACTTTACCTAGCTACCTGCCACATTATCTATCCAGCTGCAAGATATTGTGCAAAGCTCAGTCTGCGTTTCGTCTTGCGACACAAAAAGGGAACATCATGGACAAGGCAGATTTCTTAAAGGGTCTCCCTGTTTACAACAAGAGGAATTTCAGCCTGTTCCATGCAGACCCTGTGTGCAAAGCATCGAACCGAAGACCGTCCGTGTACCTCCCGACATGCGAGTATCCCTCAGAACAGATCATTGTCACGGAGAAAACAAATATCCTCCTTCGCTACCTTCACCAACAGTGGGACAAAAAGAATGCAGCGAAGAAGAGGGAACAGGatcaaggagagggagggagtccagcacctccacacaaaattGCAAGGACAGATAGCCAAGAGATGAACGAGGACTCTTAGGAGTGTGTTTGTGCATCTGGAGGAAGCACATGTACAGGCACACAACAGACATGACTATAAAGACATACGAGACACTCACACTTTGACAAACAACCTGAGAAAATGTTCACCCTGGTTTGGGAAAATTAAAAAAAGtggctttttttgttgttgttaccttCAAAGAGTTTCCTGCCTTGTCTAGTGCCCTGTTTTCAGCTTCACCCCCTAGCCCTGACCACATGGGGCGCTGCAACATCTTTACACACAGTTTGCAGACCCAATACACTGAACTTCTGCCTGCCACAGCAGGGGAGGACCCAAGGATGTATATAAACTCTGGTTTGATGATGCAATGTATTGGCCGTTGATGCAATGTATTGGCcgttgagaggctttgaagccactggtcggccatattggcactctccagtagga
>TU2557667
AAGTGCCTCACTGTACTTGCGGTTTTTCATGATTACAGAAGATAAAGTTGGACGCAAGAATGTATACAACAGCGTGCTTCAAATAACAAGTGACTGTGGAGGATTTCATAAACATTGGCTAGTAGACTGGAGAGCAGGTAGCTATCTAACTAGCTAAAACAGCAGTCTAACGTTCGCTGGCTTGATAAAACAGTCCATTAACTTTACCTAGCTACCTGCCACATTATCTATCCAGCTGCAAGATATTGTGCAAAGCTCAGTCTGCGTTTCGTCTTGCGACACAAAAAGGGAACATCATGGACAAGGCAGATTTCTTAAAGGGTCTCCCTGTTTACAACAAGAGGAATTTCAGCCTGTTCCATGCAGACCCTGTGTGCAAAGCATCGGTGAGCACTTACTCATCTATCAAAACATTTGTAATATGACAGATGAACATCATCAGTCTTGCTCCACCTGAAACGATTTTAAATCACTTTTTACAGAACCGAAGACCGTCCGTGTACCTCCCGACATGCGAGTATCCCTCAGAACAGATCATTGTCACGGAGAAAACAAATATCCTCCTTCGCTACCTTCACCAACAGTGGGACAAAAAGAATGCAGCGAAGAAGAGGGAACAGGatcaaggagagggagggagtccagcacctccacacaaaattGCAAGGACAGATAGCCAAGAGATGAACGAGGACTCTTAGGAGTGTGTTTGTGCATCTGGAGGAAGCACATGTACAGGCACACAACAGACATGACTATAAAGACATACGAGACACTCACACTTTGACAAACAACCTGAGAAAATGTTCACCCTGGTTTGGGAAAATTAAAAAAAGtggctttttttgttgttgttaccttCAAAGAGTTTCCTGCCTTGTCTAGTGCCCTGTTTTCAGCTTCACCCCCTAGCCCTGACCACATGGGGCGCTGCAACATCTTTACACACAGTTTGCAGACCCAATACACTGAACTTCTGCCTGCCACAGCAGGGGAGGACCCAAGGATGTATATAAACTCTGGTTTGATGATGCAATGTATTGGCCGTTGATGCAATGTATTGGCcgttgagaggctttgaagccactggtcggccatattggcactctccagtagga

Function

NR:

description
DET1- and DDB1-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599753.2 False 4097 mRNA 0.43 5 42548328 42554269
TU2557666 False 1022 TUCP 0.46 5 42550320 42553186
TU2557667 True 1118 lncRNA 0.45 4 42550320 42553186

Neighbor

gene id symbol gene type direction distance location
LOC110521838 LOC106583933 coding upstream 41788 42326259 ~ 42506540 (+)
LOC110521005 LOC106560551 coding upstream 494659 42012575 ~ 42053669 (+)
LOC110520957 LOC106583970 coding upstream 1069907 41477485 ~ 41478421 (+)
LOC110521832 LOC106583970 coding upstream 1080808 41458881 ~ 41467520 (+)
LOC110521828 LOC106584006 coding upstream 1390327 41101017 ~ 41158001 (+)
LOC110521842 LOC105011996 coding downstream 101887 42656156 ~ 42664378 (+)
LOC110521843 pde6d coding downstream 131544 42685813 ~ 42692514 (+)
LOC110521844 phb2 coding downstream 139596 42693865 ~ 42705266 (+)
LOC110521845 LOC106583964 coding downstream 224134 42778403 ~ 42783111 (+)
LOC110521846 LOC106583961 coding downstream 275509 42829778 ~ 43017029 (+)
G2237215 NA non-coding upstream 32434 42515677 ~ 42515894 (+)
G2237214 NA non-coding upstream 32940 42515184 ~ 42515388 (+)
G2237210 NA non-coding upstream 37046 42511053 ~ 42511282 (+)
G2237104 NA non-coding upstream 262537 42285590 ~ 42285791 (+)
G2237096 NA non-coding upstream 266950 42280933 ~ 42281378 (+)
G2237199 LOC106583966 non-coding downstream 2626 42556895 ~ 42561590 (+)
G2237323 NA non-coding downstream 138638 42692907 ~ 42693132 (+)
G2237342 NA non-coding downstream 176603 42730872 ~ 42731091 (+)
G2237346 NA non-coding downstream 182777 42737046 ~ 42737314 (+)
G2237348 NA non-coding downstream 183443 42737712 ~ 42737996 (+)
G2236045 NA other upstream 1162335 41385660 ~ 41385993 (+)
pik3r3b LOC106584012 other upstream 2403546 40143590 ~ 40468579 (+)
LOC110521817 LOC106584021 other upstream 2740278 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 3371635 39117484 ~ 39202411 (+)
G2237341 NA other downstream 175583 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 886584 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 1054312 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 1845616 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 2001925 44555495 ~ 44563618 (+)

Expression


Co-expression Network