LOC110521842 (LOC105011996)


Basic Information

Item Value
gene id LOC110521842
gene name LOC105011996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42656156 ~ 42664378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599757.2
tGACTGTGCAAACGGGAATGCAGAGAAGCTTAGGCCTGAAGCCATTACTGCTGGATGGACAAGCACTGACaaaacaagggagggagagaaacagaaacagagggaCAAGGGGAGGCTTGCTAAGGGGAGCTCCCATTCTGTCTAAGCTCCCATTCTGTCTCAGGgctaatagagagaggggaagtctCTATTTCCACAGATCCCTGGGAGCAGGAGAGGAGCAAGAAGCAGACACTGTTTCACAACAAGCAACAGAGCAcggaagagagcaagagaggggacGTCACTGCACTTTGAACTTGTACAGACTAGCAGGACCAGAGGGAGCTGTGTGTGACTTTATCATGATCTATTTAAAATCTTTGTTGTAAATAGTGAGCCTTTAGATTCAGTGTGGTTGTTCCCTGAATTGTCTGTCATCTCTGACTAttggctgtctgtctggggggATAGAATAGTGCTGCCAAGCTAATGAAACAAAAAAAGTGCTATTTATAAATGTTTTTGTGACTCAACCTTCTATGGGGTTGAATGACAACATTTAATTTCCAAGATTTTCTGAATATCTGCTTGTGGTACATACGTATAAGAAATTCTTGACACCAATTTGAGCTCCTTCTTGCCAAGCTATAACGGTGCTGCTGTCTGTAAGATTGATTGATAACACTTTCTACACACAGCCCAGAACTGGTCCGACTAGTTTGTAAGTAGGGTAAAGTAAGTCGGGCAGTTTGAAGGAGAGCAGTCCTTTTCTTTCTGGTCTTCTCCTTCGCTCCTCCCTGCTTGTCCAGGGAGAAAGTAGCGTGgtgtaaggagaggagagacaaatgAAGAAGGGGGGTCCTATTTTACCCCTCATAGACCCTCCTCCTAGTGTGGCGgaagtgacagagacagagaaagagcgagcgcGAGCATGAGCCTATAAGTGTAATTTATTGTTTCCTGTGAAAGGGCAGGCTGCACCCTTTTCTCCCTCCTGAAATCTGAACTGCTTGTTGTGTCAGAACTTTCAGGAGGAGCCATTGTCTAGGGGTCATAGGAAAAACAGAGGAGTGAAGGAGAAGAACAAGAGAGTGAGAGGTCGGAGAACAGCACCGCGGTAGAAAAATAGAGGAGTGAAAGGGATCTCCGGGTCATTTGACAGAGACAGAAGGGGAAAGAGGTCAAGAGAAGGAGTCTGGAACATGTGCAGTTTCAGTTGTTTTGACTTTTCATAACGCTGTCAGTTTTGCTTGGAAGCTGACTAAAAACCAATACCTCTTTGTGTGTGTCAGCCGTGTCACTCGGATATGGCCATGGTGATCAGGGGATGGGGCAACCCTAATGGAGAGACCAACGGACTGGGGGGGGGGAAGGCTTACTTGCgtggggatgaggaggagggctcACCTCAGGCCGGGAGTGATGCGGAGGAGGGAGACGAGGACAAGGCATGCGTGGTGAACTGTGTGGTGTGTGGGGACAAGTCCAGCGGGAAACACTACGGGGTGTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCATCAGAAGGAACCTCAACTACTCCTGCAGGTCGAATCGAGAATGCCAGATAGACCAGCATCACCGCAACCAGTGCCAATACTGCCGGCTGAAGAAATGCTTAAGTGTTGGCATGCGCAAAGAAGTCCAGCGTGGACgtatccctccatcccacccagGCATCAGTCCCACTTCTCTGGTCGGCGGAGGTGGCGGTACCAGGCCAGTAGGGGGCGAATTCTTCAACGGCCAGCCCATGTCAGAGCTCACCTCCCAGCTGCTCCACGCCGAGCCCTACCCCAGCATCCGCTACGGATCCCAGTACGGCCAGCAGCAGATGCATGGTGCTGGAGGAGGCTCCGTCATGGGCATCGACAACATCTGCGAGCTGGCGGCACGCCTCCTCTTCAGCACCATCGAGTGGGCCAGGAACATCCCTTTCTTCCCTGAGCTGCCTGTCACTGATCAGGTGGCTCTGTTGAGGCTGAGCTGGAGCGAGCTGTTCACCCTGAATGCAGCCCAGTCCGCCCTGCCGCTACACATGGCTCCTTTGCTGGCCGCGGCCGGCTTCCACTCACAGCCCATGTCGGCGGAGAGGGTGGTGTCCTTCATGGACCAGGTGAGGTTGTtccaggaccaggtggacaagctGACCCGGCTCCAAGTGGACTCAGTAGAGTACAGCTGCCTCAAGGCCATCACCCTCTTCTCTCCAGATGCGTGTGGTTTGACAGACCCCGTCCATGTGGAGTCTCTGCAGGAGAAGGCCCAGGTGGCTCTGACGGAGTACGAGAGGATGCAGTACCCGGGTCAGCCACAGCGCTTCGGACGTCTTCTCCTCCGCCTGCCTGCTCTCAGGGCCGTGCCCGCTAATCTCATCTCCCAGCTGTTCTTCATGAGCTTGGTGGGCAAGATGCCCATCGAGACCCTCATCAGGGACATGCAGCTGTCTGGGAGCTCCATCAGCTGGCCATATGTCCCTGGGCAGTGAGGAACAGAAGCCTAGGACACACAGGATCCTGGAAGAGGATCCTGGCTGGAACCTAGAGCAAGATGGAGAGGGATTATTAGCCAGTGATGTCATAATTCTTAAacgtgcaatatgcagaaatcgctctgccatttcctggttgctaaaattctaatagtttgcctaatttcagtttatgtgacaaagaaagcagtgtagagaatcattgtatcaTCTTAACCAGTATGAAAAATATTttcaataacattttttttttcttcagctgtttgaagctggtatacaaaaccgaaagtaaaagacgcaaaaactaaacttaagaattGGAAGCATAGAAATATAACATAAATCGaatgcttcttagacttgctttcaatgagaatgacagatctataactaacatttccatgtgaatctggtcacccaaaaagttacatattgcagtttAAGGTCTAATAAAGccattttttatctcaatatcaaatcatatttgggcaacaattaagtaccttactgtgattgttttcaattaaaatagtttaaaaatctaaataaaatcTTCTTAGCCAATAGCCAATTCTCAAGAAAGaatttgctaggactgtctgggagtggtctgagtggggagggaaaaactgaaaacaagctgttattggcagagaggattggaactctttcttattggtctattgacTAATTTACCACCgggtgttgac
>XM_021599756.2
GACTGTGCAAACGGGAATGCAGAGAAGCTTAGGCCTGAAGCCATTACTGCTGGATGGACAAGCACTGACaaaacaagggagggagagaaacagaaacagagggaCAAGGGGAGGCTTGCTAAGGGGAGCTCCCATTCTGTCTAAGCTCCCATTCTGTCTCAGGgctaatagagagaggggaagtctCTATTTCCACAGATCCCTGGGAGCAGGAGAGGAGCAAGAAGCAGACACTGTTTCACAACAAGCAACAGAGCAcggaagagagcaagagaggggacGTCACTGCACTTTGAACTTGTACAGACTAGCAGGACCAGAGGGAGCTGTGTGTGACTTTATCATGATCTATTTAAAATCTTTGTTGTAAATAGTGAGCCTTTAGATTCAGTGTGGTTGTTCCCTGAATTGTCTGTCATCTCTGACTAttggctgtctgtctggggggATAGAATAGTGCTGCCAAGCTAATGAAACAAAAAAAGTGCTATTTATAAATGTTTTTGTGACTCAACCTTCTATGGGGTTGAATGACAACATTTAATTTCCAAGATTTTCTGAATATCTGCTTGTGGTACATACGTATAAGAAATTCTTGACACCAATTTGAGCTCCTTCTTGCCAAGCTATAACGGTGCTGCTGTCTGTAAGATTGATTGATAACACTTTCTACACACAGCCCAGAACTGGTCCGACTAGTTTGTAAGTAGGGTAAAGTAAGTCGGGCAGTTTGAAGGAGAGCAGTCCTTTTCTTTCTGGTCTTCTCCTTCGCTCCTCCCTGCTTGTCCAGGGAGAAAGTAGCGTGgtgtaaggagaggagagacaaatgAAGAAGGGGGGTCCTATTTTACCCCTCATAGACCCTCCTCCTAGTGTGGCGgaagtgacagagacagagaaagagcgagcgcGAGCATGAGCCTATAAGTGTAATTTATTGTTTCCTGTGAAAGGGCAGGCTGCACCCTTTTCTCCCTCCTGAAATCTGAACTGCTTGTTGTGTCAGAACTTTCAGGAGGAGCCATTGTCTAGGGGTCATAGGAAAAACAGAGGAGTGAAGGAGAAGAACAAGAGAGTGAGAGGTCGGAGAACAGCACCGCGGTAGAAAAATAGAGGAGTGAAAGGGATCTCCGGGTCATTTGACAGAGACAGAAGGGGAAAGAGGTCAAGAGAAGGAGTCTGGAACATGTGCAGTTTCAGTTGTTTTGACTTTTCATAACGCTGTCAGTTTTGCTTGGAAGCTGACTAAAAACCAATACCTCTTTGTGTGTGTCAGCCGTGTCACTCGGATATGGCCATGGTGATCAGGGGATGGGGCAACCCTAATGGAGAGACCAACGGACTGGGGGGGGGGAAGGCTTACTTGCgtggggatgaggaggagggctcACCTCAGGCCGGGAGTGATGCGGAGGAGGGAGACGAGGACAAGGCATGCGTGGTGAACTGTGTGGTGTGTGGGGACAAGTCCAGCGGGAAACACTACGGGGTGTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCATCAGAAGGAACCTCAACTACTCCTGCAGGTCGAATCGAGAATGCCAGATAGACCAGCATCACCGCAACCAGTGCCAATACTGCCGGCTGAAGAAATGCTTAAGTGTTGGCATGCGCAAAGAAGcAGTCCAGCGTGGACgtatccctccatcccacccagGCATCAGTCCCACTTCTCTGGTCGGCGGAGGTGGCGGTACCAGGCCAGTAGGGGGCGAATTCTTCAACGGCCAGCCCATGTCAGAGCTCACCTCCCAGCTGCTCCACGCCGAGCCCTACCCCAGCATCCGCTACGGATCCCAGTACGGCCAGCAGCAGATGCATGGTGCTGGAGGAGGCTCCGTCATGGGCATCGACAACATCTGCGAGCTGGCGGCACGCCTCCTCTTCAGCACCATCGAGTGGGCCAGGAACATCCCTTTCTTCCCTGAGCTGCCTGTCACTGATCAGGTGGCTCTGTTGAGGCTGAGCTGGAGCGAGCTGTTCACCCTGAATGCAGCCCAGTCCGCCCTGCCGCTACACATGGCTCCTTTGCTGGCCGCGGCCGGCTTCCACTCACAGCCCATGTCGGCGGAGAGGGTGGTGTCCTTCATGGACCAGGTGAGGTTGTtccaggaccaggtggacaagctGACCCGGCTCCAAGTGGACTCAGTAGAGTACAGCTGCCTCAAGGCCATCACCCTCTTCTCTCCAGATGCGTGTGGTTTGACAGACCCCGTCCATGTGGAGTCTCTGCAGGAGAAGGCCCAGGTGGCTCTGACGGAGTACGAGAGGATGCAGTACCCGGGTCAGCCACAGCGCTTCGGACGTCTTCTCCTCCGCCTGCCTGCTCTCAGGGCCGTGCCCGCTAATCTCATCTCCCAGCTGTTCTTCATGAGCTTGGTGGGCAAGATGCCCATCGAGACCCTCATCAGGGACATGCAGCTGTCTGGGAGCTCCATCAGCTGGCCATATGTCCCTGGGCAGTGAGGAACAGAAGCCTAGGACACACAGGATCCTGGAAGAGGATCCTGGCTGGAACCTAGAGCAAGATGGAGAGGGATTATTAGCCAGTGATGTCATAATTCTTAAacgtgcaatatgcagaaatcgctctgccatttcctggttgctaaaattctaatagtttgcctaatttcagtttatgtgacaaagaaagcagtgtagagaatcattgtatcaTCTTAACCAGTATGAAAAATATTttcaataacattttttttttcttcagctgtttgaagctggtatacaaaaccgaaagtaaaagacgcaaaaactaaacttaagaattGGAAGCATAGAAATATAACATAAATCGaatgcttcttagacttgctttcaatgagaatgacagatctataactaacatttccatgtgaatctggtcacccaaaaagttacatattgcagtttAAGGTCTAATAAAGccattttttatctcaatatcaaatcatatttgggcaacaattaagtaccttactgtgattgttttcaattaaaatagtttaaaaatctaaataaaatcTTCTTAGCCAATAGCCAATTCTCAAGAAAGaatttgctaggactgtctgggagtggtctgagtggggagggaaaaactgaaaacaagctgttattggcagagaggattggaactctttcttattggtctattgacTAATTTACCACCgggtgttgac

Function

NR:

description
nuclear receptor subfamily 2 group F member 6-like isoform X1

GO: NA

KEGG:

id description
K08549 NR2F6, EAR2; nuclear receptor subfamily 2 group F member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599757.2 False 3214 mRNA 0.49 4 42656156 42664378
XM_021599756.2 True 3216 mRNA 0.49 4 42656157 42664378

Neighbor

gene id symbol gene type direction distance location
LOC110521840 LOC106583968 coding upstream 101887 42548328 ~ 42554269 (+)
LOC110521838 LOC106583933 coding upstream 149616 42326259 ~ 42506540 (+)
LOC110521005 LOC106560551 coding upstream 602487 42012575 ~ 42053669 (+)
LOC110520957 LOC106583970 coding upstream 1177735 41477485 ~ 41478421 (+)
LOC110521832 LOC106583970 coding upstream 1188636 41458881 ~ 41467520 (+)
LOC110521843 pde6d coding downstream 21435 42685813 ~ 42692514 (+)
LOC110521844 phb2 coding downstream 29487 42693865 ~ 42705266 (+)
LOC110521845 LOC106583964 coding downstream 114025 42778403 ~ 42783111 (+)
LOC110521846 LOC106583961 coding downstream 165400 42829778 ~ 43017029 (+)
LOC110521006 NA coding downstream 434068 43098446 ~ 43104156 (+)
G2237199 LOC106583966 non-coding upstream 94566 42556895 ~ 42561590 (+)
G2237215 NA non-coding upstream 140262 42515677 ~ 42515894 (+)
G2237214 NA non-coding upstream 140768 42515184 ~ 42515388 (+)
G2237210 NA non-coding upstream 144874 42511053 ~ 42511282 (+)
G2237323 NA non-coding downstream 28529 42692907 ~ 42693132 (+)
G2237342 NA non-coding downstream 66494 42730872 ~ 42731091 (+)
G2237346 NA non-coding downstream 72668 42737046 ~ 42737314 (+)
G2237348 NA non-coding downstream 73334 42737712 ~ 42737996 (+)
G2237350 NA non-coding downstream 80602 42744980 ~ 42745193 (+)
G2236045 NA other upstream 1270163 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 1535066 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 other upstream 2511374 40143590 ~ 40468579 (+)
LOC110521817 LOC106584021 other upstream 2848106 39800038 ~ 39812756 (+)
G2237341 NA other downstream 65474 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 776475 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 944203 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 1735507 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 1891816 44555495 ~ 44563618 (+)

Expression


Co-expression Network