LOC110521844 (phb2)


Basic Information

Item Value
gene id LOC110521844
gene name phb2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42693865 ~ 42705266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599759.2
ttgactacattaaaattGTGTAAGCCCTCACTGGCATTGCCAATGCTAAAACGTCCTTTTGGCCACTAGAAggctctatcattctctatggtgaTGACGCGTTCATTGGTCACGACCTTGGATATCTACTGCAAGCATGGCAAATAAAGAGCCGAACCGGTTCCTGACAAACCTGAGGGACCTGGCCAGTCGTATGTCTGGCGCGGGGGGCAAGGGAGCAGGAATAGGCCTCAAGCTGCTCATTGGGGCTGGAGCTCTGGCCTATGGGGTCAAAGAAGCTACATTCACAGTGGATGGAGGTCAGAGAGCAATCATCTTCAACAGAATTGGGGGCATGCAGATGGACACAGTGCTGGCTGAAGGACTGCACTTCAGGGTACCATGGATCCAGTACCCCATAATCTATGACATCAGAGCCAGGCCCAGGAAGATTGCTTCACTAACTGGAAGCAAAGATCTGCAGATGATTAACATTGGACTGCGTGTGCTGTCCCGTCCTGTGGCCGCCAACCTGCCTGCCATGTACCAGCAGCTGGGGAAGGACTATGATGAGAGAGTACTACCCTCCATCGTCAACGAGGTGCTGAAGAGCGTGGTGGCCAAGTTCAATGCCTCGCAGCTCATCACTCAGAGAGCACAGGTGTCATTGTTGATTCGCCGAGAGCTGTTTGAGAGAGCCAAAGACTTCAACATTATCCTGGATGACGTAGCCATCACAGAGCTGAGCTTCAGCAGAGAGTACACAGCTGCCGTAGAGGCCAAACAAGTTGCCCAGCAGGAGGCACAGAGAGCCCAGTTCTACGTGGAGAAAGCCAAACAAGACCAGAGACACAAGATTATCCAGgcggagggagaggcagaggctgCCAAGATGTTGGGACAAGCAGTGACTAAGAATCCTGGATACCTGAAACTTCGACGAATTAGAGCTGCCCAGGCTATTGCTAAGACGGTGGCAACGTCCCAGAACAAAGTGTACCTTTCCGCAGACAACCTGGTCCTTAACCTTCAGGATGACTCTTTTAACAATCTATCACTGGGAAAGAAGTAGGCTCTAGCATTCCACCTGTCTGAGGCTCCATCCACAGCTAAGAccagtttgtctctgtctgtccaacTGCCTATATCTCTGATTGTATAACCAAGTGGCTTACCAACTCACTGGAGAAGACTCTAAAGCATCGGATTGCTCTGTAAAGTTGACCTATGGGGCTCGTGCTGTATGCATGACATGGCTAGGGCCAGGCGGAACCTGCAGTGATATAATATCTTCATGGTCAACTCCAGAAACGATCTGAAATCAATGTTTGTGGATTCAAACCAAATAGCACTAGCCTATAAGCTGCTTTGTTATTAATAAGTTGTGCAGATGATGCTGTAATGATATAGATAAGGAACTCTACTTGTTATGTCTGGCCCTAGATGTGTACATGTGTTTTGAGGACAGCAGGACTCTTGGGGAATCAAATGCATCAGTTTGATTGGACAAATGCTGTACTGGAATGGTGTAttcaaaaaataaatactttttgaaGATGTGCTTGTAAAATGAAGGTGAAATGATGACTTAGTCTTATTTTTTTATGCAACTGCACTGTTTATGGCTTACTAGTTTGAAGTGGAAAGGAAGGCAGCAGATTGAGACATGACTGAAAATAAAGGGACAGCACAAAT

Function

symbol description
phb2 Enables several functions, including protein C-terminus binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including defense response to virus; positive regulation of cell cycle phase transition; and regulation of transcription, DNA-templated. Located in several cellular components, including cell surface; mitochondrial membrane; and nuclear matrix. Part of mitochondrial prohibitin complex.

NR:

description
prohibitin-2-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17081 PHB2; prohibitin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599759.2 True 1674 mRNA 0.47 10 42693865 42705266

Neighbor

gene id symbol gene type direction distance location
LOC110521843 pde6d coding upstream 1351 42685813 ~ 42692514 (+)
LOC110521842 LOC105011996 coding upstream 29487 42656156 ~ 42664378 (+)
LOC110521840 LOC106583968 coding upstream 139596 42548328 ~ 42554269 (+)
LOC110521838 LOC106583933 coding upstream 187325 42326259 ~ 42506540 (+)
LOC110521005 LOC106560551 coding upstream 640196 42012575 ~ 42053669 (+)
LOC110521845 LOC106583964 coding downstream 73137 42778403 ~ 42783111 (+)
LOC110521846 LOC106583961 coding downstream 124512 42829778 ~ 43017029 (+)
LOC110521006 NA coding downstream 393180 43098446 ~ 43104156 (+)
LOC110521849 LOC106583958 coding downstream 399080 43104346 ~ 43127082 (+)
LOC110521852 LOC106560595 coding downstream 478067 43183333 ~ 43189752 (+)
G2237323 NA non-coding upstream 733 42692907 ~ 42693132 (+)
G2237199 LOC106583966 non-coding upstream 132275 42556895 ~ 42561590 (+)
G2237215 NA non-coding upstream 177971 42515677 ~ 42515894 (+)
G2237214 NA non-coding upstream 178477 42515184 ~ 42515388 (+)
G2237342 NA non-coding downstream 25606 42730872 ~ 42731091 (+)
G2237346 NA non-coding downstream 31780 42737046 ~ 42737314 (+)
G2237348 NA non-coding downstream 32446 42737712 ~ 42737996 (+)
G2237350 NA non-coding downstream 39714 42744980 ~ 42745193 (+)
G2237821 NA non-coding downstream 47256 42752522 ~ 42752796 (+)
G2236045 NA other upstream 1307872 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 1572775 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 other upstream 2549083 40143590 ~ 40468579 (+)
LOC110521817 LOC106584021 other upstream 2885815 39800038 ~ 39812756 (+)
G2237341 NA other downstream 24586 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 735587 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 903315 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 1694619 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 1850928 44555495 ~ 44563618 (+)

Expression


Co-expression Network