LOC110521852 (LOC106560595)


Basic Information

Item Value
gene id LOC110521852
gene name LOC106560595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43183333 ~ 43189752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599782.2
CAGTTACATCATGACATCATCCAACCAGCAGTCTATATATACACCCCTCCCCAATCTGAGGGATTGAAAACGTTTGGTGGGTCTGGACAGGTACAATCCTAGATAGGAACCTTTTACGGGAGGACGTACAGTTTAGGTGTGTACGAGTTTGTGTGGGAGCCCTTTGGACTTTAGAGAACCCCTTTTGGCCCTGTGTGACTGTTTTGGCTGATAAGGTGAACCATGTGCTCGGGTAGCTTTGCCAAGTCCCTGGGCATCACCTTGATCCCCCTGGCCATCTTGTGTGTGCTCAGTAACATCCTGCTCTTCTTCCCTGGGGGGCTGGTCGCTGACGACAATGACCATATCACTAAAGAGGTGTGGTACTTTGGGGGCATCATGGGATCTGGGGTTCTGATGACCCTCCCAGCACTGGTCTTCCTAGGACTCAAAAACAATGACTGCTGCGGTTGCTGTGGCAACGAGAGTTGTGGAAAGAGATTTGCGATGTTCACCTCGATCATCTTTGCTGCGGTGGGGGTTCTGGGGGCTGGCTACTCCATCATTGTGTCTGCTGTTGCCATTCATAATGGACCAATGTGCCTCTATACCAATGGTACAACAGAGTTATGGACCAACCCCTTTGTTGACGGTGACTACCTGAATAACCACACCCTGTGGAAGGACTGTACAGCACCTGAGGGCATTGTGACCTGGCACCTGACCTTGTTTTCCATGCTGCTGGTGATGGGCCTGCTGCAGGCTGTACTCTGTGCCATCCAGGTCATCAACGGACTCATCGGTGCCATCTGTGGAGACTCCTGTGGCCGCTGTGGGAGTACTGATGGTGCAGTCTAAGGATGTTTGAGCCTCTCAGAAGACTTGTTATAACTGGCTTTCTATAAGGTGTATTTAATtttagttaaatatatatatttttaaattcaaCAATTTCCTACCTACCTAACTTGATGGCCTTTTGCATAGAAAAGATTAGATTTATTTAAAATGAAGATAATACTTAACGTAATCAAATGTATTATTCAATATGTTTAAAACATGAGAGCAGTTTTTACAAGTTATATTATAATTTCACCGTAAAAGACATGTCCAACAGAACACTTGGCATCAATTAAATCTATCAAATATGTATCTCATTTCATTGAAAATCATTTTAGCTATTTAAAAacacgaaaaaaaaaaaaacgtcataAAAGTTTGACAGAGTGAGTGGACCACACCTGTGTTGGCCTTATTTTAGTAGGCCTGTGGGTTaagttaagaatttgttcttaaccgacttgcctaattCAATAAAAGGTTCAATAAGATACATTTAAAAAGTCGTCTTATAACT

Function

NR:

description
transmembrane 4 L6 family member 4-like

GO: NA

KEGG:

id description
K24919 TM4SF4; transmembrane 4 L6 family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599782.2 True 1336 mRNA 0.43 5 43183333 43189752

Neighbor

gene id symbol gene type direction distance location
LOC110521849 LOC106583958 coding upstream 56251 43104346 ~ 43127082 (+)
LOC110521006 NA coding upstream 79177 43098446 ~ 43104156 (+)
LOC110521846 LOC106583961 coding upstream 166304 42829778 ~ 43017029 (+)
LOC110521845 LOC106583964 coding upstream 400222 42778403 ~ 42783111 (+)
LOC110521844 phb2 coding upstream 478067 42693865 ~ 42705266 (+)
LOC110521855 rpl36 coding downstream 114086 43303838 ~ 43317446 (+)
zranb2 zranb2 coding downstream 211432 43401184 ~ 43414113 (+)
LOC110513710 LOC100136747 coding downstream 346472 43536224 ~ 43546571 (+)
LOC110519394 LOC100136747 coding downstream 361898 43551650 ~ 43561525 (+)
LOC110515334 LOC100136747 coding downstream 376838 43566590 ~ 43576447 (+)
G2238021 LOC106583956 non-coding upstream 28438 43152399 ~ 43154895 (+)
G2238055 NA non-coding upstream 32932 43150201 ~ 43150401 (+)
G2238038 NA non-coding upstream 85712 43097399 ~ 43097621 (+)
G2237974 NA non-coding upstream 117720 43064375 ~ 43065613 (+)
G2237991 NA non-coding upstream 139176 43043944 ~ 43044157 (+)
G2238067 NA non-coding downstream 3891 43193643 ~ 43196720 (+)
G2238147 NA non-coding downstream 116658 43306410 ~ 43362850 (+)
G2238634 NA non-coding downstream 269371 43459123 ~ 43518012 (+)
G2238664 NA non-coding downstream 306711 43496463 ~ 43496710 (+)
G2238687 NA non-coding downstream 387549 43577301 ~ 43592677 (+)
G2237341 NA other upstream 452882 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 630147 42548328 ~ 42554269 (+)
G2236045 NA other upstream 1797340 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2062243 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 other upstream 3038551 40143590 ~ 40468579 (+)
G2238623 adgrl4 other downstream 251101 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 418829 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 1210133 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 1366442 44555495 ~ 44563618 (+)
G2239510 NA other downstream 1385104 44574856 ~ 44575278 (+)

Expression


Co-expression Network