zranb2 (zranb2)


Basic Information

Item Value
gene id zranb2
gene name zranb2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43401184 ~ 43414113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599790.2
AAACGTTTGTTTGTGGACCGCCATGATAGCATAGAAGAAGAATAAGGTTCTTTCTTTCAGGCGTCGTGAGGCCAGCTAGCGATTAGCAATGGATACAAAAATATCTGGGAAGAGTTTTCGCGTGAGCGACGGAGACTGGATTTGCCCTGATAAGAAGTGTGGAAATGTGAACTTTGCAAGAAGAACGAGCTGTAATAGATGTGGCAGTGAAAAGACAACGGAGGCAAAGATGATGAAAGCAGGAGGGACAGAGATTGGCAAGACCCTGGCTGAGAAGAGTCGGGGCCTCTTTAGTGCAAACGATTGGCAGTGTAAAACCTGCGGCAATGTGAACTGGGCCAGGAGGTCTGAGTGCAACATGTGTAACACACCTAAATATGCCAAGCTCGAGGAGAGAACAGGATATGGTGGAGGATTCAATGAGAGGGAGAATGTGGAGTACATTGACCGAGAGGAATCTGATGGAGAATACGACGAGTTTGGgaggaaaaaaaaaaagtacCGTGGGAAACCTGGTAGCAGGTCTTCCTCGAAGGAGAGTGAAAAGAAGGCGGAACCAGTGAAaccagaagaggaggaggaggaggatgacgaCGAAGAGGAAGGAGACCTTTCAAAATACAAACTAGATGATGAGGATGACGACGACGATGATGATGCGGACTTGTCAAAGTACGATCTGGATGCCAGTGGTGATGAGGGGGAGAAGGACAAGCCAGTCGCAATAAAGGATAGCACCCCAGGGTCTTCCCAATCCTCCTCGGGCTCCTCCAGCTCTCGGTCCAGGTCCAGATCCCAATCTAGAAGCTCATCCAGTTCCAGATCTCGCTCCAGTTCCCAAGAGCGAGGCCGGTCTCGCAGGTCCAACTCCAGCTCCAGGTCTGGAAAGGCCTCTTCTCCCAGGAAGAGGACTCGCTCGCCCTCCTCCTcaccagagagagaaaagaagcgTAGTCGCTCCAGGTCCTCATctggagagaggaaaaaaaggcGCTCTAGATCACGATCGTCCGAAAGGTTTGGGTTTCTGTGGAATACCGCAAATGGTGTACTGAATATTAGCCTTGCCATCTACTACCCTTTTCACTACGAGAGTCAAGATTTTGATGTGACTTACTACAGTACCTTATCTTAATGCTGTAATATCAGGTGCATGTGTTGAATTTAAGCCTTAGTTAGAGGGTCGTGCCTGTCCACCCTACTCACCTCTCTGGTATTTTGTTTCGTTTCAGGCGCCGTGGCCAGTCCTCTGGATCTTCCCATTCTGGCTCAAGTTCAAAACAGAAATAAGTTTAAAGCAACCCGTAAAACGGGAAAAAGGAATCTTAATGCCAGTGAatgatgtttaaaaaaaagaaagaaacaggACAGATCCGTTCATTATGCTGTTCATTTTACCAGAGCTTTGCAGTACACAACAAATATTTTCCTTAAAAAAAGAAAATAGTGACATGTCTCTTTTTACCATTCATTACATGCTGCCTTTTTAGAGCTCACTAAGCTCCCTGTCTGTATCAACGTGTGTAACTTTAGGTGTTCAATAGGCTTATGGTGTCTggtcctttttgttgttgttgtcgaaACAGAATAATATTGTGAAGAGGCAACATCCAATTTTAATCCAAACTGCACAATATCATGGCAGGAAACATTTTAATCCAGTCATTGTTAGGTTTTGAGAAATGAAAATAGCATAGAATGAACTTTCATTTTTTACCAAGGATGTTTTACAGATGTTGGTCTTAACCCCTGATTTTCAGTGATTCGGGAacattcttgtgtgtgtgtgtgtgaaattgtATAAGTGAGGCAAAAATGACCAACTCGGGTCTGTAAAACCATCTTGAAATATCTATTGTGTTCACCAATAAGCTTGCTAAACTAATTTGATGTCCTGTTAAGTCTTTTCTATGTTTTGAGGTAAAGTGAAGGTAAGTATTTTTCTTTACTTTCTGATATTTCTTGTTTTAAATAAGTGCAAGGTATTCCAATGGTGTTTTAGGCTTAAGAAATAACCCTAAATGATGTGGTACTGACAGTTGTTAGGACACCAATGACAGTTGAGGTAAAACTAAGTATATGTCTTACAGTAATTCATGTTTAGAGCCTATAAAATCACTACTCAACTTTGGTAAGTGTGTATGTGAAACTCAACAGGATTTCATGAAATTACTTTTTCTATTGTGAAAGCTAAAATCTTTTTGCTTTGTTTCTCTGCTCTGTTGTATACTCAAACAGTTCATGATTACTGTGCAGTAAGGATtaatttaaaaacatatttttttctcttCAAAATGACAGTATCAATAGAATGTGTTAAGATCTCGATCtctaaaaataaacaaatgtaagCAGCATGAATAAAATCCCGTCAATCATT
>XM_021599791.2
AAACGTTTGTTTGTGGACCGCCATGATAGCATAGAAGAAGAATAAGGTTCTTTCTTTCAGGCGTCGTGAGGCCAGCTAGCGATTAGCAATGGATACAAAAATATCTGGGAAGAGTTTTCGCGTGAGCGACGGAGACTGGATTTGCCCTGATAAGAAGTGTGGAAATGTGAACTTTGCAAGAAGAACGAGCTGTAATAGATGTGGCAGTGAAAAGACAACGGAGGCAAAGATGATGAAAGCAGGAGGGACAGAGATTGGCAAGACCCTGGCTGAGAAGAGTCGGGGCCTCTTTAGTGCAAACGATTGGCAGTGTAAAACCTGCGGCAATGTGAACTGGGCCAGGAGGTCTGAGTGCAACATGTGTAACACACCTAAATATGCCAAGCTCGAGGAGAGAACAGGATATGGTGGAGGATTCAATGAGAGGGAGAATGTGGAGTACATTGACCGAGAGGAATCTGATGGAGAATACGACGAGTTTGGgaggaaaaaaaaaaagtacCGTGGGAAACCTGGTAGCAGGTCTTCCTCGAAGGAGAGTGAAAAGAAGGCGGAACCAGTGAAaccagaagaggaggaggaggaggatgacgaCGAAGAGGAAGGAGACCTTTCAAAATACAAACTAGATGATGAGGATGACGACGACGATGATGATGCGGACTTGTCAAAGTACGATCTGGATGCCAGTGGTGATGAGGGGGAGAAGGACAAGCCAGTCGCAATAAAGGATAGCACCCCAGGGTCTTCCCAATCCTCCTCGGGCTCCTCCAGCTCTCGGTCCAGGTCCAGATCCCAATCTAGAAGCTCATCCAGTTCCAGATCTCGCTCCAGTTCCCAAGAGCGAGGCCGGTCTCGCAGGTCCAACTCCAGCTCCAGGTCTGGAAAGGCCTCTTCTCCCAGGAAGAGGACTCGCTCGCCCTCCTCCTcaccagagagagaaaagaagcgTAGTCGCTCCAGGTCCTCATctggagagaggaaaaaaaggcGCTCTAGATCACGATCGTCCGAAAGGCGCCGTGGCCAGTCCTCTGGATCTTCCCATTCTGGCTCAAGTTCAAAACAGAAATAAGTTTAAAGCAACCCGTAAAACGGGAAAAAGGAATCTTAATGCCAGTGAatgatgtttaaaaaaaagaaagaaacaggACAGATCCGTTCATTATGCTGTTCATTTTACCAGAGCTTTGCAGTACACAACAAATATTTTCCTTAAAAAAAGAAAATAGTGACATGTCTCTTTTTACCATTCATTACATGCTGCCTTTTTAGAGCTCACTAAGCTCCCTGTCTGTATCAACGTGTGTAACTTTAGGTGTTCAATAGGCTTATGGTGTCTggtcctttttgttgttgttgtcgaaACAGAATAATATTGTGAAGAGGCAACATCCAATTTTAATCCAAACTGCACAATATCATGGCAGGAAACATTTTAATCCAGTCATTGTTAGGTTTTGAGAAATGAAAATAGCATAGAATGAACTTTCATTTTTTACCAAGGATGTTTTACAGATGTTGGTCTTAACCCCTGATTTTCAGTGATTCGGGAacattcttgtgtgtgtgtgtgtgaaattgtATAAGTGAGGCAAAAATGACCAACTCGGGTCTGTAAAACCATCTTGAAATATCTATTGTGTTCACCAATAAGCTTGCTAAACTAATTTGATGTCCTGTTAAGTCTTTTCTATGTTTTGAGGTAAAGTGAAGGTAAGTATTTTTCTTTACTTTCTGATATTTCTTGTTTTAAATAAGTGCAAGGTATTCCAATGGTGTTTTAGGCTTAAGAAATAACCCTAAATGATGTGGTACTGACAGTTGTTAGGACACCAATGACAGTTGAGGTAAAACTAAGTATATGTCTTACAGTAATTCATGTTTAGAGCCTATAAAATCACTACTCAACTTTGGTAAGTGTGTATGTGAAACTCAACAGGATTTCATGAAATTACTTTTTCTATTGTGAAAGCTAAAATCTTTTTGCTTTGTTTCTCTGCTCTGTTGTATACTCAAACAGTTCATGATTACTGTGCAGTAAGGATtaatttaaaaacatatttttttctcttCAAAATGACAGTATCAATAGAATGTGTTAAGATCTCGATCtctaaaaataaacaaatgtaagCAGCATGAATAAAATCCCGTCAATCATT

Function

symbol description
zranb2 Enables lipid antigen binding activity and lipopolysaccharide binding activity. Acts upstream of or within defense response to bacterium. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural tube; blastoderm; blastodisc; integument; and pleuroperitoneal region. Orthologous to human ZRANB2 (zinc finger RANBP2-type containing 2).

NR:

description
PREDICTED: zinc finger Ran-binding domain-containing protein 2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599790.2 False 2380 mRNA 0.42 9 43401184 43414113
XM_021599791.2 True 2165 mRNA 0.42 10 43401184 43414113

Neighbor

gene id symbol gene type direction distance location
LOC110521855 rpl36 coding upstream 83738 43303838 ~ 43317446 (+)
LOC110521852 LOC106560595 coding upstream 211432 43183333 ~ 43189752 (+)
LOC110521849 LOC106583958 coding upstream 274102 43104346 ~ 43127082 (+)
LOC110521006 NA coding upstream 297028 43098446 ~ 43104156 (+)
LOC110521846 LOC106583961 coding upstream 384155 42829778 ~ 43017029 (+)
LOC110513710 LOC100136747 coding downstream 122111 43536224 ~ 43546571 (+)
LOC110519394 LOC100136747 coding downstream 137537 43551650 ~ 43561525 (+)
LOC110515334 LOC100136747 coding downstream 152477 43566590 ~ 43576447 (+)
LOC110521861 LOC100136747 coding downstream 167413 43581526 ~ 43591268 (+)
LOC110521008 LOC100136747 coding downstream 182198 43596311 ~ 43608691 (+)
G2238147 NA non-coding upstream 38334 43306410 ~ 43362850 (+)
G2238067 NA non-coding upstream 204464 43193643 ~ 43196720 (+)
G2238021 LOC106583956 non-coding upstream 246289 43152399 ~ 43154895 (+)
G2238055 NA non-coding upstream 250783 43150201 ~ 43150401 (+)
G2238038 NA non-coding upstream 303563 43097399 ~ 43097621 (+)
G2238634 NA non-coding downstream 45010 43459123 ~ 43518012 (+)
G2238664 NA non-coding downstream 82350 43496463 ~ 43496710 (+)
G2238687 NA non-coding downstream 163188 43577301 ~ 43592677 (+)
G2238748 NA non-coding downstream 301154 43715267 ~ 43743741 (+)
G2239203 NA non-coding downstream 590802 44004915 ~ 44005214 (+)
G2237341 NA other upstream 670733 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 847998 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2015191 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2280094 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 other upstream 3256402 40143590 ~ 40468579 (+)
G2238623 adgrl4 other downstream 26740 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 194468 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 985772 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 1142081 44555495 ~ 44563618 (+)
G2239510 NA other downstream 1160743 44574856 ~ 44575278 (+)

Expression


Co-expression Network