LOC110519394 (LOC100136747)


Basic Information

Item Value
gene id LOC110519394
gene name LOC100136747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43551650 ~ 43561525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969118.1
GAGGCACTGCTCCTGGGTGGTCTGCCTGAGGAGGGTCTGGCTAGAGCTGGAGTAAAAGTAATCAGCAAAGTTCTTATCAGTGCAGTTGCAGAGAATACCTACTTGCTGAAGCTTGTGAACCCTGAGATCTTTGAGTACAGTGGTGTGTGGCCCAAAGATCCTTTCGTCCCAGCTGCAAAACTCACTTCAGCCCTGGCTGCTCAGTTCTCGATTCCCATCAAGTTTGAGTATGCCAAGGGTGTTGTGGGTAAGGTATTTGCCCCCACTGCTGTCTCTGAAACAGTGCTGAATGTCCATAGAGGTATCCTGAACATTCTTCAGCTCAACATCAAGAAGACACAAAACGTCTATGAGTTGCAGGAGGCTGGAGCTCAGGGAGTGTGCAAGACCCACTATGTGATCAGGGAAGATGCCAAGGCAGAGCGCATCCATTTGACCAAGAGCAAGGATCTCAATAACTGTCAGCAGAGAATCATGAAGGACTTTGGTCTGGCTTACACAGAGAAGTGTGTAGAGTGCCGGCAGAGAGGGGAGGCCCTGATGGGAGCTGCCACTTacaactacctcatgaagcccgCTGACAATGGTGCTCTGATCTTGGAGGCCACTGTTACTGAGCTCCATCAGTTCACACCATTCAATGAGATGTCAGGAGCTGCCCAAATGGAAGCAAAACAAATGTTGACTTTCGTTGAGATCAAGAAGGATCCAATTATTGTCCCCGATAATAACTATGTTCACCGTGGATCCATCCGGTATGAGTTTGCCACTGAGATTCTCCAGATGCCCATTCAGCTCCTTAAGATCAGCAACGCACGTGCTCAGGCTGTGAAGATCCTGAATCATCTGGTCACATACAACACGGCACCGGTCCATGAAGATGCTCCTCTTAAGTTTCTGCAGTTTATTCAGCTCCTGCGCATGGCAAGCTCTGAGACTATTAATGCCATCTGGGCTGAGTTCAAGGCCAAACCAGCTTACAGACACTGGATCCTGGATGCTGTCCCCTCTATCGGAAGTTCAGTGGCTGTGAGATTCATCAAGGAGAAGTTTTTGGCTGGTGACATCACTATTTTTGAGGCTGCTCAGGCTCTGGTTGCCGCTGTGCATATGGTGGCTGCTGATCTGGAGACTGTCAAGCTTGTTGAAAGCCTGGCTTTCAACCACAAGATTCAGACACACCCAGTTCTACGTGAGCTCACCATGCTTGGTTATGGTACCATGGTTTCCAAATACTGTGTTGAACATCCCAACTGCCCCGCTGAACTTGTGAAGCCCATCCACGAACTTGCTGTTCAGGCTGTTGCTAATAGCAAATTTGAGGAACTCTCCATGGTTCTTAAAGCTCTGGGTAATGCTGGCCATCCTGCTAGCATTAAACCAATCACAAAGCTCCTGCCCGTGTTTGGAACTGCAGCTGCTGCTCTGCCCCTGAGAGTCCAGGCTGATGCAGTTTTGGCCCTGAGGAACATTGCTAAGAGGGAGCCTAGAATGGTCCAGGAAGTTGCTGTGCAGTTGTTCATGGACAAGGCTCTCCACCCAGAGCTCCGCATGCTTGCCTGCATTGTTCTGTTTGAGACAAAGCCCCCAATGGGCCTGGTGATTACTTTAGCTAGCATTCTGAAAACAGAGAAAAATATGCAGGTGGCTAGCTTCACCTACTCTCACATGATGTCCCTGACCAGGAGCACCGCCCCTGACTTTGCCTCAGTTGCTGCTGCCTGCAATGTTGCTGTCAAGATGCTCAGCAACAAATTTAGAAGATTGAGCTGCCACTTCAGTCAAGCCATCCACCTGGATGCCTATTCCAATCCCCTGAGGATTGGTGCTGCTGCCAGTGCTTTCTACATCAACGATGCTGCCACCCTTTTCCCCAGAACTGTCGTGGCCAAAGCTCGCACCTACTTTGCTGGAGCAGCTGCTGATGTTCTTGAGGTTGGAGTGAGAACTGAGGGAATCCAGGAGGCTCTTCTGAAATTACCCCCAGCTCCTGAAAATGCTGACAGGATCACCAAGATGAGGCGTGTCATTAAGGCTCTGTCTGACTGGAGGTCCCTAGCCACAAGCAAGCCCCTAGCCTCCATATATGTGAAGTTCTTTGGTCAGGAAATTGCCTTTGCCAACATCGACAAGTCCATCATCGATCAGGCACTTCAGCTTGCCAACAGTCCTTCTGCACACGCTTTGGGAAGAAATGCCTTGAAGGCACTGTTGGCTGGAGCAACTTTCCAGTATGTTAAGCCCCTGCTGGCTGCAGAGGTGCGTCGCATCTTCCCCACCGCTGTTGGTTTGCCCATGGAGCTCAGTTACTACACTGCTGCTGTCGCTAAAGCATACGTCAATGTCCGTGCCACTCTGACACCTGCTCTGCCTGAAACCTTCCATGCTGCCCAGCTATTGAAAACAAACATTGAGCTACACGCCGAAGTTAGACCAAGCATTGTCATGCATACATTTGCTGTGATGGGGGTGAACACTGCATTCATCCAGGCTGCTATTATGGCAAGAGCTAAGGTCCGCACAATTGTCCCTGCAAAATTTGCAGCACAGCTTGACATCGCTAATGGCAACTTCAAGTTTGAAGCTTTCCCTGTTTCCCCTCCTGAGCATATTGCTGCCGCACACATTGAGACCTTTGCTGTGGCAAGAAATGTGGAGGATGTCCCAGCCGAGAGAATAACTCCCTTGATTCCTGCCCAAGGAGTAGCAAGAAGCACACAGCAGTCCAGGGATAAGTTCACATCTATGATTGCAGACTCTGCTGCCTCTTTTGCTGGAAGTTTGTCAAGATCTTCCGAGATCCTCTATTCTGATTTGCCATCCAACTTCAAGCCCATCATTAAGGCAATTGTAGTCCATCTTGAGGAGACAATCTGTGTCGAAAGGCTTGGAGTCAAAGCATGCTTTGAATTTACCTCAGAGAGTGCTGCCTTCATCAGAAACACTcttttctacaacatgattggaaaGCATTCAGTCCTTATTTCTGTGAAACCATCATCTGAACCCGCCATCGAGAGGCTGGAGTTTGAAGTGCAAGTTGGACCCAAGGCTGCAGAAAAGATTATCAAAGTCATCACCATGAACGAAGAGGAGGAAGCTCCCGAGGGAAAAACTGTACTGTTGAAGCTCAAGAAAATTCTGCTGCCTGAGCTGAAGAACGGCACCAGAGCTTCCTCTAGTTCCAGCAGCTCTAGTTCCAGCAGCTCTCGCTCTAGTAGTTCCCGCTCTAGATCCAGAAAATCAGAGAGCAGCAGCTCTTCCAGCTCCTCCAGCTCTCGCATCTCCAAGCGTGACGGCCCCGACCAGCCTTACAACCCCAACGACCGCAAATTCAAAAAGAATCACAAGGACTCTCAATCCACCTCCAATGTCATCTCCAGAAGCAAGAGCAGTGCCTCTAGCTTCCATGCCATCTACAAGCAGGACAAATTCCTTGGCAATAAACTTGCCCCTATGGTGATCATCCTCTTCCGTTTAGTGAGAGCTGACCATAAGATAGAGGGATACCAGGTTACTGCTTACTTGAACAAAGCTACTTCCAGAATGCAGATCATTATGGCTGCCCTTGATGAGAACGACAACTGGAAACTGTGTGCTGATGGTGTTCTGCTCAGCAAACACAAAATCACTGCCAAGATTGCTTGGGGGGCAGAGTGCAAGGATTATAACACCTTTATCACTGCTGAGACTGGTCTTGTTGGTCCAAGCCCTGCAGTTCGTCTGAGGTTGTCTTGGGACAAACTCCCCAAGGTTCCCAAGGCTGTTTGGCGCTATGTTAGGATCATGTCTGAATTCATCCCTGGGCACATCCCATATTACCTGGCTGACTTGGTTCCAATGCAAAAAGACAAAAATAGTGAGAAACAGATTCAATTCACTGTGGTTGCCACATCTGAAAGGACCCTGGATGTCATTCTGAAAACACCCAAGATGACACTGTATAAACTGGGTGTGAACCTCCCCTGTTCTCTGCCATTTGAGTCTATGACTGATCTTTCTCCCTTTGATGACAACATTGTTAACAAAATCCACTACTTGTTTTCTGAAGTCAACGCAGTTAAATGTAGCATGGTCAGAGACACATTAACAACATTTAACAACAAGAAGTACAAGATCAACATGCCTCTCTCCTGCTACCAAGTTTTGGCTCAGGATTGCACCACAGAGCTCAAATTCATGGTTCTGCTGAAGAAGGATCATGCATCTGAACAAAACCACATCAATGTGAAAATCTCTGACATCGATGTTGACCTGTACACTGAAGACCATGGTGTGATAGTGAAGGTCAATGAAATGGAAATTTCCAACGACAACCTCCCATACAAGGACCCCTCAGGTTCTATCAAGATCGATCGGAAGGGTGAAGGTGTGTCTCTCTATGCCCCAAGCCATGGTCTCCAAGAAGTCTACTTTGATAGCAACTCATGGAAGATTAAAGTTGTGGACTGGATGAAGGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGCGAAAACAGACAGGAGTACCGTACACCCAGTGGCCGCCTGACCAAGAGCTCAGTCAGCTTTGCCCATTCCTGGGTGCTTCCTTCTGATAGCTGCCGCGATGCGTCTGAATGTCTCATGAAGCTCGAGTCTGTGAAGCTGGAGAAGCAGGTGATTGTTGATGACAGGGAGTCCAAATGCTACTCTGTTGAGCCTGTGCTGCGCTGTCTGCCTGGATGCCTCCCAGTGAGGACCACCCCCATCACCATCGGTTTCCACTGCCTGCCCGTCGATTCCAACCTGAACCGCTCTGAAGGTCTGAGCAGCATCTATGAGAAGAGTGTGGACCTGATGGAGAAGGCAGAAGCCCATGTGGCCTGTCGCTGCTCTGAGCAGTGCATGTAGTGCTGTGGTGGAGCAGATACTGTAACTTTTATAACAGAAAATATGTAATTTCACATCACTGAGATGTAACCTACAACATTATTGACCACTCAAATTGTAATAAATCCAACTGTGCATTCAAA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0045735 nutrient reservoir activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969118.1 True 4997 mRNA 0.49 32 43551650 43561525

Neighbor

gene id symbol gene type direction distance location
LOC110513710 LOC100136747 coding upstream 5079 43536224 ~ 43546571 (+)
zranb2 zranb2 coding upstream 137537 43401184 ~ 43414113 (+)
LOC110521855 rpl36 coding upstream 234204 43303838 ~ 43317446 (+)
LOC110521852 LOC106560595 coding upstream 361898 43183333 ~ 43189752 (+)
LOC110521849 LOC106583958 coding upstream 424568 43104346 ~ 43127082 (+)
LOC110515334 LOC100136747 coding downstream 5065 43566590 ~ 43576447 (+)
LOC110521861 LOC100136747 coding downstream 20001 43581526 ~ 43591268 (+)
LOC110521008 LOC100136747 coding downstream 34786 43596311 ~ 43608691 (+)
LOC110521009 LOC100136747 coding downstream 52906 43614431 ~ 43623301 (+)
LOC110521871 LOC106583949 coding downstream 276995 43838520 ~ 43845724 (+)
G2238634 NA non-coding upstream 33638 43459123 ~ 43518012 (+)
G2238664 NA non-coding upstream 54940 43496463 ~ 43496710 (+)
G2238147 NA non-coding upstream 188800 43306410 ~ 43362850 (+)
G2238067 NA non-coding upstream 354930 43193643 ~ 43196720 (+)
G2238021 LOC106583956 non-coding upstream 396755 43152399 ~ 43154895 (+)
G2238687 NA non-coding downstream 15776 43577301 ~ 43592677 (+)
G2238748 NA non-coding downstream 153742 43715267 ~ 43743741 (+)
G2239203 NA non-coding downstream 443390 44004915 ~ 44005214 (+)
G2239209 NA non-coding downstream 450247 44011772 ~ 44012006 (+)
G2239235 NA non-coding downstream 465852 44027377 ~ 44027711 (+)
G2238623 adgrl4 other upstream 85821 43440853 ~ 43465829 (+)
G2237341 NA other upstream 821199 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 998464 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2165657 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2430560 41101017 ~ 41158001 (+)
G2238671 LOC100136747 other downstream 47056 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 838360 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 994669 44555495 ~ 44563618 (+)
G2239510 NA other downstream 1013331 44574856 ~ 44575278 (+)
G2239933 NA other downstream 1292176 44853478 ~ 44860893 (+)

Expression


Co-expression Network