LOC110521861 (LOC100136747)


Basic Information

Item Value
gene id LOC110521861
gene name LOC100136747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43581526 ~ 43591268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968809.1
GAGGCACTGCTCCTGGGTGGTCTGCCTGAGGAGGGTCTGGCTAGAGCTGGAGTAAAAGTAATCAGCAAAGTTCTTATCAGTGCAGTTGCAGAGAATACCTACTTGCTGAAGCTTGTGAACCCTGAGATCTTTGAGTACAGTGGTGTGTGGCCCAAAGATCCTTTCGTCCCAGCTGCAAAACTCACTTCAGCCCTGGCTGCTCAGTTCTCGATTCCCATCAAGTTTGAGTATGCCAAGGGTGTTGTGGGTAAGGTATTTGCCCCCACTGCTGTCTCTGAAACAGTGCTGAATGTCCATAGAGGTATCCTGAACATTCTTCAGCTCAACATCAAGAAGACACAAAACGTCTATGAGTTGCAGGAGGCTGGAGCTCAGGGAGTGTGCAAGACCCACTATGTGATCAGGGAAGATGCCAAGGCAGAGCGCATCCATTTGACCAAGAGCAAGGATCTCAATAACTGTCAGCAGAGAATCATGAAGGACTTTGGTCTGGCTTACACAGAGAAGTGTGTAGAGTGCCGGCAGAGAGGGGAGGCCCTGATGGGAGCTGCCACTTacaactacctcatgaagcccgCTGACAATGGTGCTCTGATCTTGGAGGCCACTGTTACTGAGCTCCATCAGTTCACACCATTCAATGAGATGTCAGGAGCTGCCCAAATGGAAGCAAAACAAATGTTGACTTTCGTTGAGATCAAGAAGGATCCAATTATTGTCCCCGATAATAACTATGTTCACCGTGGATCCATCCGGTATGAGTTTGCCACTGAGATTCTCCAGATGCCCATTCAGCTCCTTAAGATCAGCAACGCACGTGCTCAGGCTGTGAAGATCCTGAATCATCTGGTCACATACAACACGGCACCGGTCCATGAAGATGCTCCTCTTAAGTTTCTGCAGTTTATTCAGCTCCTGCGCATGGCAAGCTCTGAGACTATTAATGCCATCTGGGCTGAGTTCAAGGCCAAACCAGCttacagaaactggatcctggatgctgTCCCCTCTATCGGAAGTTCAGTGGCTGTGAGATTCATCAAGGAGAAGTTTTTGGCTGGTGACATCACTATTTTTGAGGCTGCTCAGGCTCTGGTTGCCGCTGTGCATATGGTGGCTGCTGATCTGGAGACTGTCAAGCTTGTTGAAAGCCTGGCTTTCAACCACAAGATTCAGACACACCCAGTTCTACGTGAGCTCACCATGCTTGGTTATGGTACCATGGTTTCCAAATACTGTGTTGAACATCCCAACTGCCCCGCTGAACTTGTGAAGCCCATCCACGAACTTGCTGTTCAGGCTGTTGCTAATAGCAAATTTGAGGAACTCTCCATGGTTCTTAAAGCTCTGGGTAATGCTGGCCATCCTGCTAGCATTAAACCAATCACAAAGCTCCTGCCCGTGTTTGGAACTGCAGCTGCTGCTCTGCCCCTGAGAGTCCAGGCTGATGCAGTTTTGGCCCTGAGGAACATTGCTAAGAGGGAGCCTAGAATGGTCCAGGAAGTTGCTGTGCAGTTGTTCATGGACAAGGCTCTCCACCCAGAGCTCCGCATGCTTGCCTGCATTGTTCTGTTTGAGACAAAGCCCCCAATGGGCCTGGTGATTACTTTAGCTAGCATTCTGAAAACAGAGAAAAATATGCAGGTGGCTAGCTTCACCTACTCTCACATGATGTCCCTGACCAGGAGCACCGCCCCTGACTTTGCCTCAGTTGCTGCTGCCTGCAATGTTGCTGTCAAGATGCTCAGCAACAAATTTAGAAGATTGAGCTGCCACTTCAGTCAAGCCATCCACCTGGATGCCTATTCCAATCCCCTGAGGATTGGTGCTGCTGCCAGTGCTTTCTACATCAACGATGCTGCCACCCTTTTCCCCAGAACTGTCGTGGCCAAAGCTCGCACCTACTTTGCTGGAGCAGCTGCTGATGTTCTTGAGGTTGGAGTGAGAACTGAGGGAATCCAGGAGGCTCTTCTGAAATTACCCCCAGCTCCTGAAAATGCTGACAGGATCACCAAGATGAGGCGTGTCATTAAGGCTCTGTCTGACTGGAGGTCCCTAGCCACAAGCAAGCCCCTAGCCTCCATATATGTGAAGTTCTTTGGTCAGGAAATTGCCTTTGCCAACATCGACAAGTCCATCATCGATCAGGCACTTCAGCTTGCCAACAGTCCTTCTGCACACGCTTTGGGAAGAAATGCCTTGAAGGCACTGTTGGCTGGAGCAACTTTCCAGTATGTTAAGCCCCTGCTGGCTGCAGAGGTGCGTCGCATCTTCCCCACCGCTGTTGGTTTGCCCATGGAGCTCAGTTACTACACTGCTGCTGTCGCTAAAGCATACGTCAATGTCCGTGCCACTCTGACACCTGCTCTGCCTGAAACCTTCCATGCTGCCCAGCTATTGAAAACAAACATTGAGCTACACGCCGAAGTTAGACCAAGCATTGTCATGCATACATTTGCTGTGATGGGAGTGAACACTGCATTCATCCAGGCTGCTATTATGGCAAGAGCTAAGGTCCGCACAATTGTCCCTGCAAAATTTGCAGCACAGCTTGACATCGCTAATGGCAACTTCAAGTTTGAAGCTTTCCCTGTTTCCCCTCCTGAGCATATTGCTGCCGCACACATTGAGACCTTTGCTGTGGCAAGAAATGTGGAGGATGTCCCAGCCGAGAGAATAACTCCCTTGATTCCTGCCCAAGGAGTAGCAAGAAGCACACAGCAGTCCAGGGATAAGTTAACATCTATGATTGCAGATTCTGCTGCCTCTTTTGCTGGAAGTTTGTCAAGATCTTCCGAGATCCTCTATTCTGATTTGCCATCCAACTTCAAGCCCATCATTAAGGCAATTGTAGTCCATCTTGAGGAGACAATCTGTGTCGAAAGGCTTGGAGTCAAAGCATGCTTTGAATTTACCTCAGAGAGTGCTGCCTTCATCAGAAACACTcttttctacaacatgattggaaaGCATTCAGTCCTTATTTCTGTGAAACCATCATCTGAACCCGCCATCGAGAGGCTGGAGTTTGAAGTGCAAGTTGGACCCAAGGCTGCAGAAAAGATTATCAAAGTCATCACCATGAACGAAGAGGAGGAAGCTCCCGAGGGAAAAACTGTACTGTTGAAGCTCAAGAAAATTCTGCTGCCTGATCTGAAGAACGGCACCAGAGCTTCCTCTAGTTCCAGCAGCTCTAGTTCCAGCAGCTCTCGCTCTAGTAGTTCCCGCTCTAGATCCAGAAAATCAGAGAGCAGCAGCTCTTCCAGCTCCTCCAGCTCTCGCATCTCCAAGCGTGACGGCCCCGACCAGCCTTACAACCCCAACGACCGCAAATTCAAAAAGAATCACAAGGACTCTCAATCCACCTCCAATGTCATCTCCAGAAGCAAGAGCAGTGCCTCTAGCTTCCATGCCATCTACAAGCAGGACAAATTCCTTGGCAATAAACTTGCCCCTATGGTGATCATCCTCTTCCGTTTAGTGAGAGCTGACCATAAGATAGAGGGATACCAGGTTACTGCTTACTTGAACAAAGCTACTTCCAGACTGCAGATCATTATGGCTGCCCTTGATGAGAACGACAACTGGAAACTGTGTGCTGATGGTGTTCTGCTCAGCAAACACAAAGTCACTGCCAAGATTGCTTGGGGGGCAGAGTGCAAGGATTATAACACCTTTATCACTGCTGAGACTGGTCTTGTTGGTCCAAGCCCTGCAGTTCGTCTGAGGTTGTCTTGGGACAAACTCCCCAAGGTTCCCAAGGCTGTTTGGCGCTATGTTAGGATCGTGTCTGAATTCATCCCTGGGTACATCCCATATTACCTGGCTGACTTGGTTCCAAtgcaaaaatacaaaaatagtGAGAAACAGATTCAATTCACTGTGGTTGCCACATCTGAAAGGACCCTGGATGTCATTCTGAAAACACCCAAGATGACACTGTATAAACTGGGTGTGAACCTCCCCTGTTCTCTGCCATTTGAGTCTATGACTGATCTTTCTCCCTTTGATGACAACATTGTTAACAAAATCCACTACTTGTTTTCTGAAGTCAACGCAGTTAAATGTAGCATGGTCAGAGACACATTGACAACATTTAACAACAAGAAGTACAAGATCAACATGCCTCTCTCCTGCTACCAAGTTTTGGCTCAGGATTGCACCACAGAGCTCAAATTCATGGTTCTGCTGAAGAAGGATCATGCATCTGAACAAAACCACATCAATGTGAAAATCTCTGACATCGATGTTGACCTGTACACTGAAGACCATGGTGTGATGGTGAAGGTCAATGAAATGGAAATTTCCAACGACAACCTCCCATACAAGGACCCCTCAGGTTCTATCAAGATCGATCGGAAGGGTAAAGGCGTGTCTCTCTATGCCCCAAGCCATGGTCTCCAAGAAGTCTACTTTGATAGCAACTCATGGAAGATTAAAGTTGTGGACTGGATGAAGGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGCGAAAACAGACAGGAGTACCGTACACCCAGTGGCCGCCTGACCAAGAGCTCAGTCAGCTTTGCCCATTCCTGGGTGCTTCCTTCTGATAGCTGCCGCGATGCGTCTGAATGTCTCATGAAGCTCGAGTCTGTGAAGCTGGAGAAGCAGGTGATCGTTGAATACAGGGAGTCCAAATGCTACTCTGTTGAGCCTGTGCTGCGCTGTCTGCCTGGATGCCTCCCAGTGAGGACCACCCCCATCACCATCGGTTTCCACTGCCTGCCCGTCGATTCCAACCTGAACCGCTCTGAAGGTCTGAGCAGCATCTATGAGAAGAGTGTGGACCTGATGGAGAAGGCAGAAGCCCATGTGGCCTGTCGCTGCTCGGAGCAGTGCATGTAGTGCTGTGGTGGAGCA
>XM_036968808.1
TCAAACAAAGACACAATGACAGAAAACCTTTTTTTcagaaactggatcctggatgctgTCCCCTCTATCGGAAGTTCAGTGGCTGTGAGATTCATCAAGGAGAAGTTTTTGGCTGGTGACATCACTATTTTTGAGGCTGCTCAGGCTCTGGTTGCCGCTGTGCATATGGTGGCTGCTGATCTGGAGACTGTCAAGCTTGTTGAAAGCCTGGCTTTCAACCACAAGATTCAGACACACCCAGTTCTACGTGAGCTCACCATGCTTGGTTATGGTACCATGGTTTCCAAATACTGTGTTGAACATCCCAACTGCCCCGCTGAACTTGTGAAGCCCATCCACGAACTTGCTGTTCAGGCTGTTGCTAATAGCAAATTTGAGGAACTCTCCATGGTTCTTAAAGCTCTGGGTAATGCTGGCCATCCTGCTAGCATTAAACCAATCACAAAGCTCCTGCCCGTGTTTGGAACTGCAGCTGCTGCTCTGCCCCTGAGAGTCCAGGCTGATGCAGTTTTGGCCCTGAGGAACATTGCTAAGAGGGAGCCTAGAATGGTCCAGGAAGTTGCTGTGCAGTTGTTCATGGACAAGGCTCTCCACCCAGAGCTCCGCATGCTTGCCTGCATTGTTCTGTTTGAGACAAAGCCCCCAATGGGCCTGGTGATTACTTTAGCTAGCATTCTGAAAACAGAGAAAAATATGCAGGTGGCTAGCTTCACCTACTCTCACATGATGTCCCTGACCAGGAGCACCGCCCCTGACTTTGCCTCAGTTGCTGCTGCCTGCAATGTTGCTGTCAAGATGCTCAGCAACAAATTTAGAAGATTGAGCTGCCACTTCAGTCAAGCCATCCACCTGGATGCCTATTCCAATCCCCTGAGGATTGGTGCTGCTGCCAGTGCTTTCTACATCAACGATGCTGCCACCCTTTTCCCCAGAACTGTCGTGGCCAAAGCTCGCACCTACTTTGCTGGAGCAGCTGCTGATGTTCTTGAGGTTGGAGTGAGAACTGAGGGAATCCAGGAGGCTCTTCTGAAATTACCCCCAGCTCCTGAAAATGCTGACAGGATCACCAAGATGAGGCGTGTCATTAAGGCTCTGTCTGACTGGAGGTCCCTAGCCACAAGCAAGCCCCTAGCCTCCATATATGTGAAGTTCTTTGGTCAGGAAATTGCCTTTGCCAACATCGACAAGTCCATCATCGATCAGGCACTTCAGCTTGCCAACAGTCCTTCTGCACACGCTTTGGGAAGAAATGCCTTGAAGGCACTGTTGGCTGGAGCAACTTTCCAGTATGTTAAGCCCCTGCTGGCTGCAGAGGTGCGTCGCATCTTCCCCACCGCTGTTGGTTTGCCCATGGAGCTCAGTTACTACACTGCTGCTGTCGCTAAAGCATACGTCAATGTCCGTGCCACTCTGACACCTGCTCTGCCTGAAACCTTCCATGCTGCCCAGCTATTGAAAACAAACATTGAGCTACACGCCGAAGTTAGACCAAGCATTGTCATGCATACATTTGCTGTGATGGGAGTGAACACTGCATTCATCCAGGCTGCTATTATGGCAAGAGCTAAGGTCCGCACAATTGTCCCTGCAAAATTTGCAGCACAGCTTGACATCGCTAATGGCAACTTCAAGTTTGAAGCTTTCCCTGTTTCCCCTCCTGAGCATATTGCTGCCGCACACATTGAGACCTTTGCTGTGGCAAGAAATGTGGAGGATGTCCCAGCCGAGAGAATAACTCCCTTGATTCCTGCCCAAGGAGTAGCAAGAAGCACACAGCAGTCCAGGGATAAGTTAACATCTATGATTGCAGATTCTGCTGCCTCTTTTGCTGGAAGTTTGTCAAGATCTTCCGAGATCCTCTATTCTGATTTGCCATCCAACTTCAAGCCCATCATTAAGGCAATTGTAGTCCATCTTGAGGAGACAATCTGTGTCGAAAGGCTTGGAGTCAAAGCATGCTTTGAATTTACCTCAGAGAGTGCTGCCTTCATCAGAAACACTcttttctacaacatgattggaaaGCATTCAGTCCTTATTTCTGTGAAACCATCAGCATCTGAACCCGCCATCGAGAGGCTGGAGTTTGAAGTGCAAGTTGGACCCAAGGCTGCAGAAAAGATTATCAAAGTCATCACCATGAACGAAGAGGAGGAAGCTCCCGAGGGAAAAACTGTACTGTTGAAGCTCAAGAAAATTCTGCTGCCTGATCTGAAGAACGGCACCAGAGCTTCCTCTAGTTCCAGCAGCTCTAGTTCCAGCAGCTCTCGCTCTAGTAGTTCCCGCTCTAGATCCAGAAAATCAGAGAGCAGCAGCTCTTCCAGCTCCTCCAGCTCTCGCATCTCCAAGCGTGACGGCCCCGACCAGCCTTACAACCCCAACGACCGCAAATTCAAAAAGAATCACAAGGACTCTCAATCCACCTCCAATGTCATCTCCAGAAGCAAGAGCAGTGCCTCTAGCTTCCATGCCATCTACAAGCAGGACAAATTCCTTGGCAATAAACTTGCCCCTATGGTGATCATCCTCTTCCGTTTAGTGAGAGCTGACCATAAGATAGAGGGATACCAGGTTACTGCTTACTTGAACAAAGCTACTTCCAGACTGCAGATCATTATGGCTGCCCTTGATGAGAACGACAACTGGAAACTGTGTGCTGATGGTGTTCTGCTCAGCAAACACAAAGTCACTGCCAAGATTGCTTGGGGGGCAGAGTGCAAGGATTATAACACCTTTATCACTGCTGAGACTGGTCTTGTTGGTCCAAGCCCTGCAGTTCGTCTGAGGTTGTCTTGGGACAAACTCCCCAAGGTTCCCAAGGCTGTTTGGCGCTATGTTAGGATCGTGTCTGAATTCATCCCTGGGTACATCCCATATTACCTGGCTGACTTGGTTCCAAtgcaaaaatacaaaaatagtGAGAAACAGATTCAATTCACTGTGGTTGCCACATCTGAAAGGACCCTGGATGTCATTCTGAAAACACCCAAGATGACACTGTATAAACTGGGTGTGAACCTCCCCTGTTCTCTGCCATTTGAGTCTATGACTGATCTTTCTCCCTTTGATGACAACATTGTTAACAAAATCCACTACTTGTTTTCTGAAGTCAACGCAGTTAAATGTAGCATGGTCAGAGACACATTGACAACATTTAACAACAAGAAGTACAAGATCAACATGCCTCTCTCCTGCTACCAAGTTTTGGCTCAGGATTGCACCACAGAGCTCAAATTCATGGTTCTGCTGAAGAAGGATCATGCATCTGAACAAAACCACATCAATGTGAAAATCTCTGACATCGATGTTGACCTGTACACTGAAGACCATGGTGTGATGGTGAAGGTCAATGAAATGGAAATTTCCAACGACAACCTCCCATACAAGGACCCCTCAGGTTCTATCAAGATCGATCGGAAGGGTAAAGGCGTGTCTCTCTATGCCCCAAGCCATGGTCTCCAAGAAGTCTACTTTGATAGCAACTCATGGAAGATTAAAGTTGTGGACTGGATGAAGGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGCGAAAACAGACAGGAGTACCGTACACCCAGTGGCCGCCTGACCAAGAGCTCAGTCAGCTTTGCCCATTCCTGGGTGCTTCCTTCTGATAGCTGCCGCGATGCGTCTGAATGTCTCATGAAGCTCGAGTCTGTGAAGCTGGAGAAGCAGGTGATCGTTGAATACAGGGAGTCCAAATGCTACTCTGTTGAGCCTGTGCTGCGCTGTCTGCCTGGATGCCTCCCAGTGAGGACCACCCCCATCACCATCGGTTTCCACTGCCTGCCCGTCGATTCCAACCTGAACCGCTCTGAAGGTCTGAGCAGCATCTATGAGAAGAGTGTGGACCTGATGGAGAAGGCAGAAGCCCATGTGGCCTGTCGCTGCTCGGAGCAGTGCATGTAGTGCTGTGGTGGAGCA

Function

NR:

description
vitellogenin

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0045735 nutrient reservoir activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968809.1 False 4890 mRNA 0.49 32 43581526 43591268
XM_036968808.1 True 3948 mRNA 0.49 26 43583000 43591268

Neighbor

gene id symbol gene type direction distance location
LOC110515334 LOC100136747 coding upstream 5079 43566590 ~ 43576447 (+)
LOC110519394 LOC100136747 coding upstream 20001 43551650 ~ 43561525 (+)
LOC110513710 LOC100136747 coding upstream 34955 43536224 ~ 43546571 (+)
zranb2 zranb2 coding upstream 167413 43401184 ~ 43414113 (+)
LOC110521855 rpl36 coding upstream 264080 43303838 ~ 43317446 (+)
LOC110521008 LOC100136747 coding downstream 5043 43596311 ~ 43608691 (+)
LOC110521009 LOC100136747 coding downstream 23163 43614431 ~ 43623301 (+)
LOC110521871 LOC106583949 coding downstream 247252 43838520 ~ 43845724 (+)
LOC118945797 NA coding downstream 314238 43905506 ~ 43910872 (+)
LOC110521011 LOC106583946 coding downstream 470785 44062053 ~ 44100935 (+)
G2238634 NA non-coding upstream 63514 43459123 ~ 43518012 (+)
G2238664 NA non-coding upstream 84816 43496463 ~ 43496710 (+)
G2238147 NA non-coding upstream 218676 43306410 ~ 43362850 (+)
G2238067 NA non-coding upstream 384806 43193643 ~ 43196720 (+)
G2238021 LOC106583956 non-coding upstream 426631 43152399 ~ 43154895 (+)
G2238748 NA non-coding downstream 123999 43715267 ~ 43743741 (+)
G2239203 NA non-coding downstream 413647 44004915 ~ 44005214 (+)
G2239209 NA non-coding downstream 420504 44011772 ~ 44012006 (+)
G2239235 NA non-coding downstream 436109 44027377 ~ 44027711 (+)
G2239247 NA non-coding downstream 441569 44032837 ~ 44033097 (+)
G2238623 adgrl4 other upstream 115697 43440853 ~ 43465829 (+)
G2237341 NA other upstream 851075 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1028340 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2195533 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2460436 41101017 ~ 41158001 (+)
G2238671 LOC100136747 other downstream 17313 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 808617 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 964926 44555495 ~ 44563618 (+)
G2239510 NA other downstream 983588 44574856 ~ 44575278 (+)
G2239933 NA other downstream 1262433 44853478 ~ 44860893 (+)

Expression


Co-expression Network