LOC110521008 (LOC100136747)


Basic Information

Item Value
gene id LOC110521008
gene name LOC100136747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43596311 ~ 43608691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969190.1
TTTCTTTAAAAGGCGGACTGGGACTGTTGTTCCTCACATCACACTGGCCATGAGAGCAGTAGTACTTGCACTGACTCTAGCCCTTGTGGCGAGTCAATCTGTTAACTTTGCCCCTGATTTTGCTGCCAGTAAGACCTATGTGTACAAGTATGAGGCACTGCTCCTGGGTGGTCTGCCTGAGGAGGGTCTGGCTAGAGCTGGAGTAAAAGTAATCAGCAAAGTTATTATCAGTGCAGTTGCAGAGAATACCTACTTGCTGAAGCTTGTGAACCCTGAGATCTTTGAGTACAGTGGTGTGTGGCCCAAAGATCCTTTCGTCCCAGCTGCAAAACTCACTTCAGCCCTGGCTGCTCAGTTCTCGATTCCCATCAAGTTTGAGTATGCCAAGGGTGTTGTGGGTAAGGTATTTGCCCCCACTGCTGTCTCTGAAACAGTGCTGAATGTCCATAGAGGTATCCTGAACATTCTTCAGCTCAACATCAAGAAGACACAAAACGTCTATGAGTTGCAGGAGGCTGGAGCTCAGGGAGTGTGCAAGACCCACTATGTGATCAGGGAAGATGCCAAGGCAGAGCGCATCCATTTGACCAAGAGCAAGGATCTCAATAACTGTCAGCAGAGAATCATGAAGGACTTTGGTCTGGCTTACACAGAGAAGTGTGTAGAGTGCCGGCAGAGAGGGGAGGCCCTGATGGGAGCTGCCACTTacaactacctcatgaagcccgCTGACAATGGTGCTCTGATCTTGGAGGCCACTGTTACTGAGCTCCATCAGTTCACACCATTCAATGAGATGTCAGGAGCTGCCCAAATGGAAGCAAAACAAATGTTGACTTTCGTTGAGATCAAGAAGGATCCAATTATTGTCCCCGATAATAACTATGTTCACCGTGGATCCATCCGGTATGAGTTTGCCACTGAGATTCTCCAGATGCCCATTCAGCTCCTTAAGATCAGCAACGCACGTGCTCAGGCTGTGAAGATCCTGAATCATCTGGTCACATACAACACGGCACCGGTCCATGAAGATGCTCCTCTTAAGTTTCTGAAGTTTATTCAGCTCCTGCGCATGGCAAGCTCTGAGACTATTAATGCCATCTGGGCTGAGTTCAAGGCCAAACCAGCTTACAGACACTGGATCCTGGATGCTGTCCCCTCTATCGGAAGTTCAGTGGCTGTGAGATTCATCAAGGAGAAGTTTTTGGCTGGTGACATCACTATTTTTGAGGCTGCTCAGGCTCTGGTTGCCGCTGTGCATATGGTGGCTGCTGATCTGGAGACTGTCAAGCTTGTTGAAAGCCTGGCTTTCAACCACAAGATTCAGACACACCCAGTTCTACGTGAGCTCACCATGCTTGGTTATGGTACCATGGTTTCCAAATACTGTGTTGAACATCCCAACTGCCCCGCTGAACTTGTGAAGCCCATCCACGAACTTGCTGTTCGGGCTGTTGCTAATAGCAAATTTGAGGAACTCTCCATGGTTCTTAAAGCTCTGGGTAATGCTGGCCATCCTGCTAGCATTAAACCAATCACAAAGCTCCTGCCCGTGTTTGGAACTGCAGCTGCTGCTCTGCCCCTGAGAGTCCAGGCTGATGCAGTTTTGGCCCTGAGGAACATTGCTAAGAGGGAGCCTAGAATGGTCCAGGAAGTTGCTGTGCAGTTGTTCATGGACAAGGCTCTCCACCCAGAGCTCCGCATGCTTGCCTGCATTGTTCTGTTTGAGACAAAGCCCCCAATGGGCCTGGTGATTACTTTAGCTAGCATTCTGAAAACAGAGAAAAATATGCAGGTGGCTAGCTTCACCTACTCTCACATGATGTCCCTGACCAGGAGCACCGCCCCTGACTTTGCCTCAGTTGCTGCTGCCTGCAATGTTGCTGTCAAGATGCTCAGCAACAAATTTAGAAGATTGAGCTGCCACTTCAGTCAAGCCATCCACCTGGATGCCTATTCCAATCCCCTGAGGATTGGTGCTGCTGCCAGTGCTTTCTACATCAACGATGCTGCCACCCTTTTCCCCAGAACTGTCGTGGCCAAAGCTCGCACCTACTTTGCTGGAGCAGCTGCTGATGTTCTTGAGGTTGGAGTGAGAACTGAGGGAATCCAGGAGGCTCTTCTGAAACTACCCCCAGCTCCTGAAAATGCTGACAGGATCACCAAGATGAGGCGTGTCATTAAGGCTCTGTCTGACTGGAGGTCCCTAGCCACAAGCAAGCCCCTAGCCTCCATATATGTGAAGTTCTTTGGACAGGAAATTGCCTTTGCCAACATCGACAAGTCCATCATCGATCAGGCACTTCAGCTTGCCAACAGTCCTTCTGCACACGCTTTGGGAAGAAATGCCTTGAAGGCACTGTTGGCTGGAGCAACTTTCCAGTATGTTAAGCCCCTGCTGGCTGCAGAGGTGCGTCGCATCTTCCCCACCGCTGTTGGTTTGCCCATGGAGCTCAGTTACTACACTGCTGCTGTCGCTAAAGCATACGTCAATGTCCGTGCCACTCTGACACCTGCTCTGCCTGAAACCTTCCATGCTGCCCAGCTATTGAAAACAAACATTGAGCTACACGCCGAAGTTAGACCAAGCATTGTCATGCATACATTTGCTGTGATGGGAGTGAACACTGCATTCATCCAGGCTGCTATTATGGCAAGAGCTAAGGTCCGCACAATTGTCCCTGCAAAATTTGCAGCACAGCTTGACATCGCTAATGGCAACTTCAAGTTTGAAGCTTTCCCTGTTTCCCCTCCTGAGCATATTGCTGCCGCACACATTGAGACCTTTGCTGTGGCAAGAAATGTGGAGGATGTCCAAGCCGAGAGAATAACTCCCTTGATTCCTGCCCAAGGAGTAGCAAGAAGCACACAGCAGTCCAGGGATAAGTTCACATCTATGATTGCAGACTCTGCTGCCTCTTTTGCTGGAAGTTTGTCAAGATCTTCCGAGATCCTCTATTCTGATTTGCCATCCAACTTCAAGCCCATCATTAAGGCAATTGTAGTCCATCTTGAGGAGACAATCTGTGTCGAAAGGCTTGGAGTCAAAGCATGCTTTGAATTTACCTCAGAGAGTGCTGCCTTCATCAGAAACACTcttttctacaacatgattggaaaGCATTCAGTCCTTATTTCTGTGAAACCATCAGCATCTGAACCCGCCATCGAGAGGCTGGAGTTTGAAGTGCAAGTTGGACCCAAGGCTGCAGAAAAGATTATCAAAGTCATCACCATGAACGAAGAGGAGGAAGCTCCCGAGGGAAAAACTGTACTGTTGAAGCTCAAGAAAATTCTGCTGCCTGATCTGAAGAACGGCACCAGAGCTTCCTCTAGTTCCAGCAGCTCTAGTTCCAGCAGCTCTCGCTCTAGTAGTTCCCGCTCTAGATCCAGAAAATCAGAGAGCAGCAGCTCTTCCAGCTCCTCCAGCTCTCGCATCTCCAAGCCTGACGGCCCAGACCAGCCTTACAACCCCAACGACCGCAAATTCAAAAAGAATCACAAGGACTCtcaagccacctccaatgtcatctCCAGAAGCAAGAGCAGTGCCTCTAGCTTCCATGCCATCTACAAGCAGGACAAATTCCTTGGCAATAAACTTGCCCCTATGGTGATCATCCTCTTCCGTTTAGTGAGAGCTGACCATAAGATAGAGGGATACCAGGTTACTGCTTACTTGAACAAAGCTACTTCCAGACTGCAGATCATTATGGCTGCCCTTGATGAGAACGACAACTGGAAACTGTGTGCTGATGGTGTTCTGCTCAGCAAACACAAAGTCACTGCCAAGATTGCTTGGGGGGCAGAGTGCAAGGATTATAACACCTTTATCACTGCTGAGACTGGTCTTGTTGGTCCAAGCCCTGCAGTTCGTCTGAGGTTGTCTTGGGACAAACTCCCCAAGGTTCCCAAGGCTGTTTGGCGCTATGTTAGGATCGTGTCTGAATTCATCCCTGGGTACATCCCATATTACCTGGCTGACTTGGTTCCAATGCAAAAAGACAAAAATAGTGAGAAACAGATTCAATTCACTGTGGTTGCCACATCTGAAAGGACCCTGGATGTCATTCTGAAAACACCCAAGATGACACTGTATAAACTGGGTGTGAACCTCCCCTGTTCTCTGCCATTTGAGTCTATGACTGATCTTTCTCCCTTTGATGACAACATTGTTAACAAAATCCACTACTTGTTTTCTGAAGTCAACGCAGTTAAATGTAGCATGGTCAGAGACACATTGACAACATTTAACAACAGGAAGTACAAGATCAACATGCCTCTCTCCTGCTACCAAGTTTTGGCTCAGGATTGCACCATAGAGCTCAAATTCATGGTTCTGCTGAAGAAGGATCACGGATCTGAACAAAACCACATCAATGTGAAAATCTCTGACATTGATGTTGACCTGTACCCTGAGGACAATGATGTGATAGTGAAGGTCAATGGAATGGACATTTCCAAAGACAACCTCCCATACGAGGACCCCTCAGGTTCTATCAAGATCAAACAGAAGGGTGAAGGTGTGTCTCTCTATGCCCCAAGCCATGGTCTCCAAAAAGTCTACTTTGATAAGTACTCATGGAAGATTAAAGTTGTGGACTGGATGAAGGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGCGAACACAGACAGGAGTACCGTACACCCAGTGGCCGCCTGACCAAGAGCTCAGTCAGCTTTGCCCATTCCTGGGTGCTTCCTTCTGATAGCTGCCGTGATGCGTCTGGTAAATCTTAG

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0045735 nutrient reservoir activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969190.1 True 4765 mRNA 0.48 32 43596311 43608691

Neighbor

gene id symbol gene type direction distance location
LOC110521861 LOC100136747 coding upstream 5043 43581526 ~ 43591268 (+)
LOC110515334 LOC100136747 coding upstream 19864 43566590 ~ 43576447 (+)
LOC110519394 LOC100136747 coding upstream 34786 43551650 ~ 43561525 (+)
LOC110513710 LOC100136747 coding upstream 49740 43536224 ~ 43546571 (+)
zranb2 zranb2 coding upstream 182198 43401184 ~ 43414113 (+)
LOC110521009 LOC100136747 coding downstream 5740 43614431 ~ 43623301 (+)
LOC110521871 LOC106583949 coding downstream 229829 43838520 ~ 43845724 (+)
LOC118945797 NA coding downstream 296815 43905506 ~ 43910872 (+)
LOC110521011 LOC106583946 coding downstream 453362 44062053 ~ 44100935 (+)
LOC110521874 LOC106583945 coding downstream 505076 44113767 ~ 44124283 (+)
G2238687 NA non-coding upstream 3634 43577301 ~ 43592677 (+)
G2238634 NA non-coding upstream 78299 43459123 ~ 43518012 (+)
G2238664 NA non-coding upstream 99601 43496463 ~ 43496710 (+)
G2238147 NA non-coding upstream 233461 43306410 ~ 43362850 (+)
G2238067 NA non-coding upstream 399591 43193643 ~ 43196720 (+)
G2238748 NA non-coding downstream 106576 43715267 ~ 43743741 (+)
G2239203 NA non-coding downstream 396224 44004915 ~ 44005214 (+)
G2239209 NA non-coding downstream 403081 44011772 ~ 44012006 (+)
G2239235 NA non-coding downstream 418686 44027377 ~ 44027711 (+)
G2239247 NA non-coding downstream 424146 44032837 ~ 44033097 (+)
G2238623 adgrl4 other upstream 130482 43440853 ~ 43465829 (+)
G2237341 NA other upstream 865860 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1043125 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2210318 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2475221 41101017 ~ 41158001 (+)
G2239435 LOC106583900 other downstream 791194 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 947503 44555495 ~ 44563618 (+)
G2239510 NA other downstream 966165 44574856 ~ 44575278 (+)
G2239933 NA other downstream 1245010 44853478 ~ 44860893 (+)
G2240165 NA other downstream 1356079 44964770 ~ 44965537 (+)

Expression


Co-expression Network