LOC110521009 (LOC100136747)


Basic Information

Item Value
gene id LOC110521009
gene name LOC100136747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43614431 ~ 43623301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969084.1
ATGAGAGCAGTAGTACTTGCACTGACTCTAGCCCTTGTGGCGAGTCAATCTGTTAACTTTGCCCCTGATTTTGCTGCCAGTAAGACCTATGTGTACAAGTATGAGGCACTGCTCCTGGGTGGTCTGCCTGAGGAGGGTCTGGCTAGAGCTGGAGTAAAAGTAATCAGCAAAGTTCTTATCAGTGCAGTTGCAGAGAATACCTACTTGCTGAAGCTTGTGAACCCTGAGATCTTTGAGTACAGTGGTGTGTGGCCCAAAGATCCTTTCGTCCCAGCTGCAAAACTCACTTCAGCCCTGGCTGCTCAGTTCTCGATTCCCATCAAGTTTGAGTATGCCAAGGGTGTTGTGGGTAAGGTATTTGCCCCCACTGCTGTCTTTGAAACAGTGCTGAATGTCCATAGAGGTATCTTGAACATTCTTCAGCTCAACATCAAGAAGACACAAAACGTCTATGAGTTGCAGGAGGCTGGAGCTCAGGGAGTGTGCAAGACCCACTATGTGATCAGGGAAGATGCCAAGGCAGAGCGCATCCATTTGACCAAGAGCAAGGATCTCAATAACTGCCAGCAGAGAATCATGAAGGACTTTGGTCTGGCTTACACAGAGAAGTGTGTAGAGTGCCGGCAGAGAGGGGAGGCCCTGATGGGAGCTGCCACTTacaactacctcatgaagcccgCTGCCAATGGTGCTCTGATCTTGGAGGCCACTGTTACTGAGCTCCATCAGTTCACACCATTCAATGAGATGTCAGGAGCTGCCCAAATGGAAGCAAAACAAATGTTGACTTTCGTTGAGATCAAGAAGGATCCAATTGTTGTCCCCGATAATAACTATGTTCACCGTGGATCCATCCGGTATGAGTTTGCCACTGAGATTCTCCAGATGCCCATTCAGCTCCTTAAGATCAGCAACGCACGTGCTCAGGCTGTGAAGATCCTGAATCATCTGGTCACATACAACACGGCACCGGTCCATGAAGATGCTCCTCTTAAGTTTCTGCAGTTTATTCAGCTCCTGCGCGTGGCAAGCTCTGAGACTATTAATGCCATCTGGGCTGAGTTCAAGGCCAAACCAGcttacagACACTGGATCCTGGATGCTGTCCCCTCCATCGGAAGATCAGTGGCTGTGAGATTCATCAAGGAGAAGTTTTTGGCTGGTGACATCACTATTTTTGAGGCTGCTCAGGCTCTGGTTGCCGCTGTGCATATGGTGGCTGCTGATCTGGAGACTGTCAAGCTTGTTGAAAGCCTGGCTTTCAACCACAAGATTCAGACACACCCAGTTCTACGTGAGCTCGCCATGCTTGGTTATGGTACCATGGTTTCCAAATACTGTGTTGAATATCCCAACTGCCCCGCTGAACTTGTGAAGCCCATCCATGAACTTGCTGTTCAGGCTGTTGCTAATAGCAAATTTGAGGAACTCTCCATGGTTCTTAAAGCTCTGGGTAATGCTGGCCATCCTGCTAGCATTAAACCAATCACAAAGCTCCTGCCCGTGTTTGGAACTGCAGCTGCTGCTCTGCCCCTGAGAGTCCAGGCTGATGCAGTCTTGGCCCTGAGGAACATTGCTAAGAGGGAGCCTAGAATGGTCCAGGAAGTTGCTGTGCAGTTGTTCATGGACAAGGCTCTCCACCCAGAGCTCCGCATGCTTGCCTGCATTGTTCTGTTTGAGACAAAGCCCCCAATGGGCCTGGTGATTATTTTAGCTAGCATTCTGAAAACAGAGAACAATCTGCAGGTGGCTAGCTTCACCTACTCTCACATGAAGTCCCTGACCAGGAGCACCGCCCCTGACTTTGCCTCAGTTGCTGCTGCCTGCAATGTTGCTGTCAAGATGCTCAGCACCAAATTGAGAAGATTGAGCTGCCACTTCAGTCAAGCCATCCACCTGGATGCCTATTCCAATCCCCTGAGGATTGGTGCTGCTGCCAGTGCTTTCTACATCAACGATGCTGCCACCCTTTTCCCCAGAACTGTCGTGGCCAAAGCTCGCACCTACTTTGCTGGAGCAGCTGCTGATGTTCTTGAGGTTGGAGTGAGAACTGAGGGAATCCAGGAGGCTCTTCTGAAATTACCCCCAGCTCCTGAAAATGCTGACAGGATCACCAAGATGAGGCGTGTCATTAAGGCTCTGTCTGACTGGAGGTCCCTATGCACAAGAAAGCCCCTAGCCTCCATATATGTGAAGTTCTTTGGACAGGAAATTGCCTTTGCCAACATCGACAAGTCCATCATCGATCAGGCACTTCAGCTTGCCAACAGTCCTTCTGCACACGCTTTGGGAAAAAATGCCTTGAAGGCACTGTTGGCTGGAGCAACTTTCCAGTATGTTAAGCCCCTGCTGGCTGCAGAGGTGCGTCGCATCTTCCCCACCGCTGTTGGTTTGCCCATGGAGCTCAGTTACTACACTGCTGCTGTCGCTAAAGCATACGTCAATGTCCGTGCCACTCTGACACCTGCTCTGCCTGAAACCTTCCATGCTGCCCAGCTATTGAAAACAAACATTGAGCTACACGCCGAAGTTAGACCAAGCATTGTCATGCATACATTTGCTGTGATGGGAGTGAACACTGCATTCATCCAGGCTGCTATTATGGCAAGAGCTAAGGTCCGCACAATTGTCCCTGCAAAATTTGCAGCACAGCTTGACATCGCTAATGGCAACTTCAAGTTTGAAGCTTTCCCTGTTTCCCCTCCTGAGCATATTGCTGCCGCACACATTGAGACCTTTGCTGTGGCAAGAAATGTGGAGGATGTCCCAGCCGAGAGAATAACTCCCTTGATTCCTGCCCAAGGAGTAGCAAGAAGCACACAGCAGTCCAGGGATAAGTTCACATCTATGATTGCAGACTCTGCTGCCTCTTTTGCTGGAAGTTTGTCAAGATCTTCTGAGATCATCTATTCTGATTTGCCATCCAACTTCAAGCCCATCATTAAGGCAATTGTAGTCCATCTTGAGGAGACAATCTGTGTCGAAAGGCTTGGAGTCAAAGCATGCTTTGAATTTACCTCAGAGAGTGCTGCCTTCATCAGAAACACCcttttctacaacatgattggaaaGCATTCAGTCCTTATTTCTGTGAAACCATCAGCATCTGAACCCGCCATCGAGAGGCTGGAGTTTGAAGTGCAAGTTGGACCCAAGGCTGCAGAAAAGATTATCAAAGTCATCACCATGAACGAAGAGGAGGAAGCTCCCGAGGGAAAAACTGTACTGTTGAAGCTCAAGAAAATTCTGCTGCCTGATCTGAAGAACGGCACCAGAGCTTCCTCTAGTTCCAGCAGCTCTAGTTCCAGCAGCTCTCGCTCTAGTAGTTCCCGCTCTAGATCCAGAAAATCAGAGAGCAGCAGCTCTTCCAGCTCCTCCAGCTCTCGCATCTCCAAGCCTGACGGCCCAGACCAGCCTTACAACCCCAACGACCGCAAATTCAAAAAGAATCACAAGGACTCtcaagccacctccaatgtcatctCCAGAAGCAAGAGCAGTGCCTCTAGCTTCCATGCCATCTACAAGCAGGACAAATTCCTTGGCAATAAACTTGCCCCTATGGTGATCATCCTCTTCCGTTTAGTGAGAGCTGACCATAAGATAGAGGGATACCAGGTTACTGCTTACTTGAACAAAGCTACTTCCAGACTGCAGATCATTATGGCTGCCCTTGATGAGAACGACACCTGGAAACTGTGTGCTGATGGTGTTCTGCTCAGCAAACACAAAATCACTGCCAAGATTGCTTGGGGGGCAGAGTGCAAGGATTATAACACCTTTATCACTGCTGAGACTGGTCTTGTTGGTCCAAGCCCTGCAGTTCGTCTGAGGTTGTCTTGGGACAAACTCCCCAAGGTTCCCAAGGCTGTTTGGCGCTATGTTAGGATCGTGTCTGAATTCATCCCTGGGTACATCCCATATTACCTGGCTGACTTGGTTCCAATGCAAAAAGACAAAAATAGTGAGAAACAGATTCAATTCACTGTGGTTGCCACATCTGAAAGGACCCTGGATGTCATTCTGAAAACACCCAAGATGACACTGTATAAACTGGGTGTGAACCTCCCCTGTTCTCTGCCATTTGAGTCTATGACTGATCTTTCTCCCTTTGATGACAACATTGTTAACAAAATCCACTACTTGTTTTCTGAAGTCAACGCAGTTAAATGTAGCATGGTCAGAGACACATTGACAACATTTAACAACAGGAAGTACAAGATCAACATGCCTCTCTCCTGCTACCAAGTTTTGGCTCAGGATTGCACCATAGAGCTCAAATTCATGGTTCTGCTGAAGAAGGATCACGGATCTGAACAAAACCACATCAATGTGAAAATCTCTGACATTGATGTTGACCTGTACCCTGAGGACAATGATGTGATAGTGAAGGTCAATGGAATGGACATTTCCAAAGACAACCTCCCATACGAGGACCCCTCAGGTTCTATCAAGATCAAACAGAAGGGTGAAGGTGTGTCTCTCTATGCCCCAAGCCATGGTCTCCAAAAAGTCTACTTTGATAAGTACTCATGGAAGATTAAAGTTGTGGACTGGATGAAGGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGCGAACACAGACAGGAGTACCGTACACCCAGTGGCCGCCTGACCAAGAGCTCAGTCAGCTTTGCCCATTCCTGGGTGCTTCCTTCTGATAGCTGCCGTGATGGGTCTGAATGTCTCATGAAGCTCGAGTCTGTGAAGCTGGAGAAGCAGGTGATTGTTGATGACAGGGAGTCCAAATGCTACTCTGTTGAGCCTGTGCTGCGCTGTCTGCCTGGATGCCTCCCAGTGAGGACCACCCCCATCACCATCGGTTTCCACTGCCTGCCCGTCGATTCCAACCTGAACCGCTCTGAAGGTCTGAGCAGCATCTATGAGAAGAGTGTGGACCTGATGGAGAAGGCAGAAGCCCATGTGGCCTGTCGCTGCTCTGAGCAGTGCATGTAGTGCTGTGGTGGAGCAGATACTGTAACTTTTATAACAGAAAATATGTAATTTCACATCACTGAGATGTAACCTACAACATTATTGACCACTCAAATTGTAATAAATCCAACTGTGCATTCAAA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0045735 nutrient reservoir activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969084.1 True 5102 mRNA 0.49 34 43614431 43623301

Neighbor

gene id symbol gene type direction distance location
LOC110521008 LOC100136747 coding upstream 5740 43596311 ~ 43608691 (+)
LOC110521861 LOC100136747 coding upstream 23163 43581526 ~ 43591268 (+)
LOC110515334 LOC100136747 coding upstream 37984 43566590 ~ 43576447 (+)
LOC110519394 LOC100136747 coding upstream 52906 43551650 ~ 43561525 (+)
LOC110513710 LOC100136747 coding upstream 67860 43536224 ~ 43546571 (+)
LOC110521871 LOC106583949 coding downstream 215219 43838520 ~ 43845724 (+)
LOC118945797 NA coding downstream 282205 43905506 ~ 43910872 (+)
LOC110521011 LOC106583946 coding downstream 438752 44062053 ~ 44100935 (+)
LOC110521874 LOC106583945 coding downstream 490466 44113767 ~ 44124283 (+)
LOC110521876 LOC106583944 coding downstream 501106 44124407 ~ 44145448 (+)
G2238687 NA non-coding upstream 21754 43577301 ~ 43592677 (+)
G2238634 NA non-coding upstream 96419 43459123 ~ 43518012 (+)
G2238664 NA non-coding upstream 117721 43496463 ~ 43496710 (+)
G2238147 NA non-coding upstream 251581 43306410 ~ 43362850 (+)
G2238067 NA non-coding upstream 417711 43193643 ~ 43196720 (+)
G2238748 NA non-coding downstream 91966 43715267 ~ 43743741 (+)
G2239203 NA non-coding downstream 381614 44004915 ~ 44005214 (+)
G2239209 NA non-coding downstream 388471 44011772 ~ 44012006 (+)
G2239235 NA non-coding downstream 404076 44027377 ~ 44027711 (+)
G2239247 NA non-coding downstream 409536 44032837 ~ 44033097 (+)
G2238623 adgrl4 other upstream 148602 43440853 ~ 43465829 (+)
G2237341 NA other upstream 883980 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1061245 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2228438 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2493341 41101017 ~ 41158001 (+)
G2239435 LOC106583900 other downstream 776584 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 932893 44555495 ~ 44563618 (+)
G2239510 NA other downstream 951555 44574856 ~ 44575278 (+)
G2239933 NA other downstream 1230400 44853478 ~ 44860893 (+)
G2240165 NA other downstream 1341469 44964770 ~ 44965537 (+)

Expression


Co-expression Network