LOC118945797


Basic Information

Item Value
gene id LOC118945797
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43905506 ~ 43910872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040911.1
ATCTAAGCTGCATGCATAAAGTTCATGCAGGAATGCCTGCTCACAGAACCGTGTAAAATTTGGTTTGACTACGAAAGAGGTGGCACTTTGGGGATTTTGGTGTCTCTAATGCAACCAACTGCACAATGATCACTTAAATCATACCAACGGCCGAGTATTTATGCGGATTGTTAGTTAGAATGACATCAATAAGTGTTGACTTAGGGATGTCTTCTGGATTGAGTCTTGTGACTGCATTTATAATTTAATTAAAATTCAGTGTATTGCACAGTCCTCTTATTGCTTCACAGTTTGGACATAAGTTTGGACACAGTTTGGACACAGTCCCAGTTTAAATCGCCCATGAGGACCATTTCATTTCCCCCCAACCACGCATCAGTTCAGCCAGAGAATCCAGGGATTCTACTTTTGCAGATGGAGGTCTATAGCATCCTATTACATCTAAGTTCATAGCTTTCGATTAACTGCAGTTTCAATGCTAAAAACTCTAACTGTTTTGGTTTAGATAAAGACCTTAGTTCAGTAACCACATATCTGCCTAATATAGATAGATGGCTTATACCTCCCCCTTACTTCGTTGGTCACATCGATAAACATTATAACCATCCAAGCCTATTGACTCATTTAGAACAGATTTCTTAAACCAGGTTTTGGACTGAACTACGACATCTGGGTCAGCAGTGTGAACCTAAACTTTTATCATGTCCATTTTCAGCATCACTCTTCACATTAAtatgaggaggagagattactagaaacaaactcggTTTATCATTTTATCAGTAATTAATTGAGTAGAGTACcctgtgcatttcaggtaaaaataacaacccaatgtttttATCCCAAGACAACTTAGCGAGCTATCTAAATTGCCACAAAAGTTGAAtgattttcgacctgtccccaaatcaatatagttggttcagagttcattttgatatttcaacctgtgtgtcctgatcgcgtctggtgtggttggacaaaatcaacatgtgtGCATGCGATGGCACATGCGAGCGGTCTGGTCAGCGGTGCATGTACACTAGATAGGGCCAATTGCAGCATGCTGCTTAGGCCGCCCATTGTGACCTtcttgtgggcgtgctggcagcATGTGGCAACATGCTCGATTGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCtggtgacaaataaactttgctGCCCTGTTTCCAATTGTCCACATGTatgggagaacctattcaaATAGCTTGTAACTGGAGATTCCTGGAGGAATTCAGGTGTGTGAAGGCTACCTGTGTTCTGCATAACTTTATGAGGATGGACCAGGAGGGGATCTGCAGCTCGCCGCCGTGTGCCAGAGGAGAAGTCTGCTGCTCTGCAGGATGTTTCAAGGATGGGGTCCAACAAAGCAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTACTTCTTCGAAGagggtgctgttccctggcaacaccaGACTACACTATGCAtaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttgcttagctatgtcaactgcagttgagggtgctgtttaggtaagggtgtaatgtctgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGGACAATTAGACACCCTATAactcacacctacacactcatgtatcaatctgattgatggattgtgttgtgcagtaagcaggctcaggtgtataactgtggatccttccaccttcaaagaataggcaagagggccaacaATGGAGAATATTAAGACACTTCATTATTTTATAACTACACTATATTATTTGTCCTCGTGTGTCCGTTCATGTtcttcagcataaagtactctgcagccacttagtgtggtgtggacaccaggtgaagccacacacacagattcctgttgaacactCTCTTTAACTACCTTGTTTTCTCAATAACAGtacctctccttcacttcatccctctctcctcttctccctaaatcctctaggttatatcagctgtgtcggtgaacccctcctgcatctgaactggctacatagagggcacagcatgatcagagATGTTTTGATGAGAGGATGCCAACCCCCAGTCCCATCATtgccacctcacccgctcttaagataaccttcgggccgACTCGAGAcacttatgtaattgtgatgaactgagagaatatttggGTAGCActgattcattaatcatatgctgccTTCTCTGCTCctatgt
>XR_005040912.1
TTCTACTTTTGCAGATGGAGGTCTATAGCATCCTATTACATCTAAGTTCATAGCTTTCGATTAACTGCAGTTTCAATGCTAAAAACTCTAACTGTTTTGGTTTAGATAAAGACCTTAGTTCAGTAACCACATATCTGCCTAATATAGATAGATGGCTTATACCTCCCCCTTACTTCGTTGGTCACATCGATAAACATTATAACCATCCAAGCCTATTGACTCATTTAGAACAGATTTCTTAAACCAGGTTTTGGACTGAACTACGACATCTGGGTCAGCAGTGTGAACCTAAACTTTTATCATGTCCATTTTCAGCATCACTCTTCACATTAAtatgaggaggagagattactagaaacaaactcggTTTATCATTTTATCAGTAATTAATTGAGTAGAGTACcctgtgcatttcaggtaaaaataacaacccaatgtttttATCCCAAGACAACTTAGCGAGCTATCTAAATTGCCACAAAAGTTGAAtgattttcgacctgtccccaaatcaatatagttggttcagagttcattttgatatttcaacctgtgtgtcctgatcgcgtctggtgtggttggacaaaatcaacatgtgtGCATGCGATGGCACATGCGAGCGGTCTGGTCAGCGGTGCATGTACACTAGATAGGGCCAATTGCAGCATGCTGCTTAGGCCGCCCATTGTGACCTtcttgtgggcgtgctggcagcATGTGGCAACATGCTCGATTGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCtggtgacaaataaactttgctGCCCTGTTTCCAATTGTCCACATGTatgggagaacctattcaaATAGCTTGTAACTGGAGATTCCTGGAGGAATTCAGGTGTGTGAAGGCTACCTGTGTTCTGCATAACTTTATGAGGATGGACCAGGAGGGGATCTGCAGCTCGCCGCCGTGTGCCAGAGGAGAAGTCTGCTGCTCTGCAGGATGTTTCAAGGATGGGGTCCAACAAAGCAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTACTTCTTCGAAGagggttatatcagctgtgtcggtgaacccctcctgcatctgaactggctacatagagggcacagcatgatcagagATGTTTTGATGAGAGGATGCCAACCCCCAGTCCCATCATtgccacctcacccgctcttaagataaccttcgggccgACTCGAGAcacttatgtaattgtgatgaactgagagaatatttggGTAGCActgattcattaatcatatgctgccTTCTCTGCTCctatgt

Function

NR:

description
PREDICTED: uncharacterized protein LOC109204916

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040911.1 False 2320 mRNA 0.42 3 43905506 43910872
XR_005040912.1 True 1349 mRNA 0.43 4 43905906 43910872

Neighbor

gene id symbol gene type direction distance location
LOC110521871 LOC106583949 coding upstream 59782 43838520 ~ 43845724 (+)
LOC110521009 LOC100136747 coding upstream 282205 43614431 ~ 43623301 (+)
LOC110521008 LOC100136747 coding upstream 296815 43596311 ~ 43608691 (+)
LOC110521861 LOC100136747 coding upstream 314238 43581526 ~ 43591268 (+)
LOC110515334 LOC100136747 coding upstream 329059 43566590 ~ 43576447 (+)
LOC110521011 LOC106583946 coding downstream 151181 44062053 ~ 44100935 (+)
LOC110521874 LOC106583945 coding downstream 202895 44113767 ~ 44124283 (+)
LOC110521876 LOC106583944 coding downstream 213535 44124407 ~ 44145448 (+)
LOC110521877 LOC106583943 coding downstream 235173 44146045 ~ 44162689 (+)
LOC110521878 mvp coding downstream 259058 44169930 ~ 44196336 (+)
G2238748 NA non-coding upstream 161765 43715267 ~ 43743741 (+)
G2238687 NA non-coding upstream 312829 43577301 ~ 43592677 (+)
G2238634 NA non-coding upstream 387494 43459123 ~ 43518012 (+)
G2238664 NA non-coding upstream 408796 43496463 ~ 43496710 (+)
G2238147 NA non-coding upstream 542656 43306410 ~ 43362850 (+)
G2239203 NA non-coding downstream 94043 44004915 ~ 44005214 (+)
G2239209 NA non-coding downstream 100900 44011772 ~ 44012006 (+)
G2239235 NA non-coding downstream 116505 44027377 ~ 44027711 (+)
G2239247 NA non-coding downstream 121965 44032837 ~ 44033097 (+)
G2239274 NA non-coding downstream 144390 44055262 ~ 44055700 (+)
G2238671 LOC100136747 other upstream 282203 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 439677 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1175055 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1352320 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2519513 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 489013 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 645322 44555495 ~ 44563618 (+)
G2239510 NA other downstream 663984 44574856 ~ 44575278 (+)
G2239933 NA other downstream 942829 44853478 ~ 44860893 (+)
G2240165 NA other downstream 1053898 44964770 ~ 44965537 (+)

Expression


Co-expression Network