LOC110521879 (LOC106600749)


Basic Information

Item Value
gene id LOC110521879
gene name LOC106600749
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44197377 ~ 44206470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599815.2
TCCGGGCATAGGAGtttcctgtctccccctccctctcctcaatATTGCAGCGCCGttgaacaaaagagagagagagagcgagatgatgAGGTAGCAACATAGCAAGCACACGAGCGCAATTTGACATCCCCCGGCGTGATCTGTAGCCTAATTTGACCGTTACCGTTTACCATAGCCTGTATCAAAAGAAAAAGACAATTCGACGAATTCTGGGTGGAGATTTTAATCGTAGCCTACTGAACTTGTCATATTTTCTCTTTTTTACTACACGTTGCAATTTACAGTAATATTTGGAATTGCGATCAAGAAAAGCAAAATGTTAAGGATAATGTTTCATGTCACTCAATAAGATCAGTTGAAGAAGATCAAACGTCCAATCAAGACCAATCATCAAAAAGGCCCAAACTACCAGTGAAACAACATTGTCCGCATTCCGCCATGTCTTCCAACACCAATGCTGCCCACAGTGGAGTGGAGGGAGAACAGCAGCCGGAGCAGACCATCACCTCCCAGCCAACCAGCGCTGAGCACCAAGAGACAGCCCCTGACTCCAGCCAATCGGAATCCAAAGACCACTTGGCAGTAATCAGCGAGAAGATGGAGACCAGTAATGGAATGTGTGCTGCCGACTCCTCACCCACATCTTCCATCTCGTCCCCAAAGCGACTGCAACACGCCAAACCAACCAATGGCCGGGCGCGGAAAGGAAGCCGCTCTGGGTCCCTGCTGGGTCATGGGGCAGGGTCTCCCAGGCCTTCCATCAGCCGTCAGCCCAGCACCGTGACAGAGGAAGACGACGGCAAGCCCCCTAGAGACTACCTAATATTGGCCATCCTGTCCTGCTTCTGCCCCTTGTGGCCCATCAACATCGTGGCTCTTGTCTTCTCTGTTATGTCGAGGAACAGCCTGCAGCTGGGGAACGTAGACGGGGCGCGGCGTCTGGGCCGGAACGCAATGGTGCTGTCGATCGTTTCACTAGTTGGCggggtcatcatcatcatcgcagCCATCGTCTTAAACTGGGGAAGTATAATAAAATCCTGAGGCTCACCATGGAAACCAGGAGCAAGATCGCAAGACAGCACACCAACAACCATCCCAACCAGACTTTTCCCCTCTCCTACGATCAAAACACTATTCTACAAAAGCGCCTGCAACCTACAGCATACCCCTTGGACCCCTTTTTTGCTGCACTATCATGTATGGCCTGTAATATGTTCTCTGAAACAGATAGACAAGTCCGTCACCTCTACCTCCTACACCTCCTACACCTGCCCCCAGTGGTGTAGTGCAGGGTAAACGTACGTAAATGTCGTTTACACACATTTTGCTCCTGTGTTTATCCATCTTTTGCAGACaaatgcattgaaagtatagggGGCGTTACTTTATTGACCGTCAACGGTGATCAGGAGTTACAGGACCCACCTATTTTTTGACCACCCGTCACTGGCTGCCACCATCACTCCGAAGGTCGAAGGCATCAGGTAGAACAACACTGAGGTAGGATAGACAGCGACAAACAGACTGGTTCCTCTGAATGAGAGAGATGCGTCTAACGAGTCTAACTGTGGTCAACGATGCCATGATCTCCTGGTTGCCTGAGTCTCAGAATGTATTTAAAGTCTCTGCATGATTTTCCGGGATCAGGCTGCTCCTCCCAGGCTGTTCCTCCCAGGCTGCTCCTCCCAGGCTGTTCCTCCCAGGCTGCTCCTCCCAGGCTGTTCCAATGTGACAAAACACAAAGTGTCTCTGTTGTTGCCGGAAAGGACATCTGGTTTTCTCTGTAATGTTATTATTTCCTTCCACTGAATCATTCATATTCAGTCAGTCCACACCTCTGTAACACAACCAAGGGATCCTTTTAACTGTGACGCCAAAACCATTGTTATTTTctgtgaagggagggaggaggaggagttagagACAGATGGGACCATCTGTACTTTAATTTAGGGACAAACCTGGGGTCTCCATCTCTTTGCTTCATCGTCTTCATTTAAAAATAACTGGAATCTGGGGAGAATGAGCCACTCTGGGTTTGGGATTGAGGCTGGGCTGGTAACTCATATGCACTCTCAAACACACTatcttacaccccccccccccccccccccccgagcacatgcacacacacggacacacacacaatcatccaTACACATAGTGTCAGAATGACTGATTCTCATTggctgagagaaagagggagataaagaacaggagaggagaagagggagagagggaggggaggattgGGAATAGCTGCATGGGCTGCAGTCCTTTGTTTGGCACAGATggtggcaaagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagatggtgtgctGCTTGTTACTGATGCTGAGTATACTAGACTGGAAAAACAAACGTACCAGAGCTGGGTACAGAATAAACACAAAAGACAGGCGGTCATTTTAATTTTGTTGCTTATTCTTCATTTCCCCCTCTTCTGTCCAGTATCTACCACCATATTATCCACCATTTATTGGTAACGTTATTtattaatttgacctttattttaacagggtgTCCtattgagaccaaggtctcttttgcaAGGGAGCCATGTATCTCACAATTACACAACAACAATGTTATGACAGCCTGCTTGACAGTATTTACACAGTTCTAAACATAGTCTACCATCTCTGGTCAGTTTGAATCCATTCCTCTCCCTTCAGTATTGCAAATATATTACCCACTTTACCTTTCACCTCTCTAATATGTAGTCATTATCTTTGATGGTTGCCTCTTTTGTTAAAATTCTATGCAAATACCTTGCTGGGGTATTTGGTCAGTTGGTACTCCTTCTCCACCGTGGTCAGTATCAGCTGGTCACGGTGGTCAGTATGTGCTTAGTGTTTGCCCTTGTCTGGTTGTTATTCACAAAGCAGAATGACCTCTTCTCCCTTTGGAAGTCAGTCAGTGTGTCACTGTGCCAAAGCCTGGAATGTGAGCCAAGCCACGTACAGTAGGGGCCAGGCAGTCTTTGGCTTGACTCCGGCTAAGTGCTCTgtcggtgtgtgtgagagagagagagagagagcgaaagagtgtgagagaaatgcagtgtgtgtgtgtgtgtgtgtgtgtgttgtatgtatgtatatgtatgtgtgtgtatgtgtgtgtgtgtgtg

Function

NR:

description
tumor suppressor candidate 5 homolog

GO: NA

KEGG:

id description
K23897 PRRT2; proline-rich transmembrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599815.2 True 3187 mRNA 0.48 5 44197377 44206470

Neighbor

gene id symbol gene type direction distance location
LOC110521878 mvp coding upstream 1041 44169930 ~ 44196336 (+)
LOC110521877 LOC106583943 coding upstream 34688 44146045 ~ 44162689 (+)
LOC110521876 LOC106583944 coding upstream 51929 44124407 ~ 44145448 (+)
LOC110521874 LOC106583945 coding upstream 73094 44113767 ~ 44124283 (+)
LOC110521011 LOC106583946 coding upstream 96442 44062053 ~ 44100935 (+)
LOC110521880 LOC106583941 coding downstream 14925 44221395 ~ 44231315 (+)
LOC110521881 LOC106583940 coding downstream 25089 44231559 ~ 44234933 (+)
LOC110521882 LOC106584009 coding downstream 40372 44246842 ~ 44248418 (+)
LOC110521884 sgf29 coding downstream 54675 44261145 ~ 44269206 (+)
LOC110521885 LOC106583937 coding downstream 66079 44272549 ~ 44289275 (+)
G2239314 NA non-coding upstream 87555 44109406 ~ 44109822 (+)
G2239312 NA non-coding upstream 89983 44107109 ~ 44107394 (+)
G2239280 NA non-coding upstream 137562 44059590 ~ 44059815 (+)
G2239277 NA non-coding upstream 138708 44058396 ~ 44058669 (+)
G2239346 NA non-coding downstream 7006 44213476 ~ 44213805 (+)
G2239347 NA non-coding downstream 8402 44214872 ~ 44215154 (+)
G2239350 NA non-coding downstream 12996 44219466 ~ 44219671 (+)
G2239363 NA non-coding downstream 35203 44241673 ~ 44242010 (+)
G2239365 NA non-coding downstream 36847 44243317 ~ 44243526 (+)
G2238671 LOC100136747 other upstream 574074 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 731548 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1466926 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1644191 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2811384 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 193415 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 349724 44555495 ~ 44563618 (+)
G2239510 NA other downstream 368386 44574856 ~ 44575278 (+)
G2239933 NA other downstream 647231 44853478 ~ 44860893 (+)
G2240165 NA other downstream 758300 44964770 ~ 44965537 (+)

Expression


Co-expression Network