LOC110521880 (LOC106583941)


Basic Information

Item Value
gene id LOC110521880
gene name LOC106583941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44221395 ~ 44231315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599816.2
tgggatatgtacgtatggtcactgtggggatgatgagGTTGATGGATTTATTGATGAAGCAGGTGACTGagatggtatactcctcaatgccattggatgagtcccagaacatattccagtctgtgctgacAAAACAGTCATGTAGCATATCTGCTGACTTCACTAGGTCTGTCTGTTTAGTCTTTTTGTGTTTGGTCTTCTGTTCATAGGCCTACCTCTTTGATTAAGGGCTGAATGGTAAATTAGTTGAGTAGTTGAATCAGATGTTGTTGGGATGGACCAGGGTTGAGGGATCATGTTATAAAACTACTGATGCAGAGGAAATTATACAGGGTTGCACTGCCCCCTTGTGGCTCAACATAAACAAGACAGCAATTTCACCTCCCAAACAGCAGGTGGCgataaaacaacacacacacacacacacacacacacacttccgatTAACCCAACTACCAACAAACGAAGAGTAAAATCACAACATCAGCTGAGAGAGAGACGGGACATTATCCTGCAGTATTATATGTCTTTAAAATGACCAAACTTCAACTGTTGAATGCCTACCTGACAGAACGTTTAACGGTAGTGGTGCGGGAGATTCTGGACGTGGTTGGGGACACAGTGGCCGAGTACCGAGAAGAGACGGCTAGGacgaagagagagaatgaaagcgCTAAGAGAGAAAATGAAAGCCTTCGGCGACAGCTCCGGGACATCTTACTCTTGGCGGAGACAGACTGGCGATCCAccagcctttctctctctgggcagcagcagcagctttgTGAGCAAGAGTGGAGCTCCAGGCAGGAACAGGACCCAGAACCCCTTCAGCAGAGCCAGGTCAACAGACGAGGGCTACAGACACAGAGCCAGGTAGCGTTGGGTAAGGATGGGGGTCTCACAGGACCAAACCAGGGACACACTGAAACGGTCCGAGTAGAAGAgaagtccagtccagtcccaaaGACAGAGCACAACTCAGACCCAGAAGCCAAGGGTTTTGGAAACACCTCGTCCTTGGCACCATCTTTGTTCTCCTCCAATGCCCACTGTGCCACAACAACTGGAGCAGCCAACGCTGAAGTGCCAGTCcttaggacagagagaaagaggtccTCTCCCATCGACCCAATCCAGGGACGGATCAAAATGGAACCCAAGGAATGTGACGTCACAGTGAACCTTACCAACCATGAACCTCAATCCAGTTCAGGCTACACAGGTCTTCCTATAACACTACTACCCCACAACCATGAACTCTCAGGCGATGCTGGCTTCAAAGACCTTCCGGATATGGACATCTCAGAGCTCCATAACACACATGACCAGCAAACATATGAAACAGATCCTGGGTCCAAGGACCAGGTGTTGCCATATAACGAGAGTAACAACTTCACCCCCACCGACTACCAGGAGGGGCGCCCACACCGCTGCACCCGATGTGGGGAGAGTTTCAGCCAGGCGGccagcctccacctccacctccagtACAAGAAGCCCTACGCCTGTGACTGGTGCTGTAAGTCCTTCGCCCAGTCGGCTGACCTGCGGCGCCACCACCGCATCCACACGGGGGAGAGGCCCCACCGCTGCTCCTGGTGCTCCAAAAGCTTTACCCAGAGAGGCAACCTGAGACGACACCTGAGGATCCACACCGGTGAGAGACCCTACAGCTGCCCCTACTGCCACAGGACCTTCAGCGACGGAGACACCATGAAAAAGCACAAACGGACTCACTCTGGGGAGAAACCCTATCGCTGTGTCCAGTGTCCCAAGAGCTTCACTGTGGCCAGCGGCCTGCGGGTACACCTGAACACACACCAGACAGATGCAGGGCAGCTCATCACATGAGGTCAATGTGCTCCACCTTTTCAAACACCGGAGGACATGAAGGGATTGTGAAACGTTGAAGTGTTTTAGCCATAGGAATATTTCCTAAATATATTTATTGGAATTAATAAAAACAGTGCAGTAGAAAACAAATGGATAATGTCACCTTAGCTGATGTTTCCAGCTTGATtgaagagtgtgtgtttgtgaacatgAATTAAATCAGTCCGTCATTTAAA

Function

NR:

description
zinc finger and SCAN domain-containing protein 22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599816.2 True 2072 mRNA 0.50 3 44221395 44231315

Neighbor

gene id symbol gene type direction distance location
LOC110521879 LOC106600749 coding upstream 14925 44197377 ~ 44206470 (+)
LOC110521878 mvp coding upstream 25059 44169930 ~ 44196336 (+)
LOC110521877 LOC106583943 coding upstream 58706 44146045 ~ 44162689 (+)
LOC110521876 LOC106583944 coding upstream 75947 44124407 ~ 44145448 (+)
LOC110521874 LOC106583945 coding upstream 97112 44113767 ~ 44124283 (+)
LOC110521881 LOC106583940 coding downstream 244 44231559 ~ 44234933 (+)
LOC110521882 LOC106584009 coding downstream 15527 44246842 ~ 44248418 (+)
LOC110521884 sgf29 coding downstream 29830 44261145 ~ 44269206 (+)
LOC110521885 LOC106583937 coding downstream 41234 44272549 ~ 44289275 (+)
lat NA coding downstream 59121 44290436 ~ 44293436 (+)
G2239350 NA non-coding upstream 1724 44219466 ~ 44219671 (+)
G2239347 NA non-coding upstream 6241 44214872 ~ 44215154 (+)
G2239346 NA non-coding upstream 7590 44213476 ~ 44213805 (+)
G2239314 NA non-coding upstream 111573 44109406 ~ 44109822 (+)
G2239312 NA non-coding upstream 114001 44107109 ~ 44107394 (+)
G2239363 NA non-coding downstream 10358 44241673 ~ 44242010 (+)
G2239365 NA non-coding downstream 12002 44243317 ~ 44243526 (+)
G2239367 NA non-coding downstream 13284 44244599 ~ 44244832 (+)
G2239372 NA non-coding downstream 22126 44253441 ~ 44255957 (+)
G2238671 LOC100136747 other upstream 598092 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 755566 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1490944 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1668209 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2835402 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 168570 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 324879 44555495 ~ 44563618 (+)
G2239510 NA other downstream 343541 44574856 ~ 44575278 (+)
G2239933 NA other downstream 622386 44853478 ~ 44860893 (+)
G2240165 NA other downstream 733455 44964770 ~ 44965537 (+)

Expression


Co-expression Network