LOC110521881 (LOC106583940)


Basic Information

Item Value
gene id LOC110521881
gene name LOC106583940
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44231559 ~ 44234933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599817.2
TAGGAAGTGAATGCTTTCACCGAGGTGTTTACAAAACAATCTAGCTTGGGTCGTTACTAGGAGGCTTTCAGTGGATTTTAACCAATATTTGGGGGAGGCTAATTTCTAGAAAATGGCCAAACTACAGCTTTTGAATGCTTACCTCACCGAGCGGTTAATGGTGGCTGTAGATGAGATACTGGAGGTTGTTGGGGGGACAGTGTCAGAATTCGAGGAGGAGACTGCCCGGAcgaagagagagaatgaactCCTAAAACGAAGGCTACGAGAAGTTGGACTCGACACAGGAACGGAGTGTTCAGCAGTCTCGACCaggcctgtttctctctctgtgtctgggcaGCACCAGTGGAGCGCCGACCAGGGTCCAGACCCTGAGTCTACACACACCCAGAACCACATGGTAATGAGCCAGGATGAGATGCCTGCCACACATAGCCAGCTACCCACAGAGTGCACCGAGTGGAAGAGTCTGTGTAACTCTCCATGTACCCTGTCCTCACAACAGACCGATACATCGGCTACCACCCCAGTAGTAGCTCCATTGACTTCAGCGTCCGTGAAAAGGGACTTGGACGAAGAAGACGACCAGCATCTCCTTCCCTCTGCAAATTCCTTCAGCAGCACATCATGCCCCGTGGACAGAGTGGTTTTACACTATAACTCTGAGGGCATCAAAACAGAGCCTAGTGATACTAGCCCTACTGACTTGGGGTCAGTATCTGCTCAGATGGGGTATGGTGAACTAAACCCCAGTTCGGACCCTGGACCAGCCACTGTTGAAACCAGGTACACTGTCTCAGACCTGAGcgctgacctggagtcagtggttGCAGAGAGCAGCAGGTATGGTGCCTCCACTGCCTCGGGCGTCCCCACTGACCTGGTATCAGCTAGTGCTGCCATGATCCCAAACGGCTTTTTACGTCAGATTGGCAGCGATGGTTGTGTAACAACAGGGCCAGAACAAGACTTTGGGGACGCCACCACCACCAGTACCGTAGGTCCCTTGACCTCCCAGTTCTACCCGGGTCAAACCAGACGTCAACAACAAACAAATAGATCAACAAATAGGTGTCATCAACAAATTAACAGGTCCACAAACAACAGGggtcaacaacaaactaacaacAGGGGGGATCAGAGGTCCCACCCGTGCCCTCAGTGTGGTAAGATATTCAGTCACGGGTCACGCCTCAAGATCCACCTCCgcattcacacaggggagaagccgtaCGTTTGTGCACTGTGTGGCAAGCGATTCAACAACGATGGCACACTGAGGAACCACCGGCGTGTTCACACAGAGCTGCGTCTGTACGGCTGCCCTGTCTGCGGCATGAGCTTCAAGGACGCCTACACGTGTAGGAAGCACCAGCGTGTTCATAATGGATTGCGGCCTGCCGGAGACTCGGCCCACACCTGCAGCTTGTGTGGCAAGGCTTTCAGTGAGGCGGCTAAGCTGACCAAACACATCAGGACTCATGCGTCAGTCATTGGATGAGGGCAGTACGACCTATAAAGGCTTTTTTATAGCAATCATAAAGGATATTTAAGCACTATATAAACGCTTCACATATAATCTATAAGCGTATGTTATACACTATAAATGGTGTATGAAGGGTGACGTAACAATTACCACTGAAGGGTTTATTGTAAGTTAATAGACCATTTCTAGATTATGACTTACACTTATGATTTGTAAAGCCTTTAAGTAGTGCTATATAAAGCCTTTATTGTACTTTGCAACGGAGCTCCCAGGTGGCGCGTCCTGCTCAGGCACTTCACCTGACGTGCAGAggggcgtcactacagcctgACGTGACCGGGGAGCTCcaagggcggtgcacaattggcctagcactgtccgggttaggggagggtaggGTTGGCATGCAATTCCTTGTCTTAACTTGCTCTAGCGTCGTCTTATGGCGGACTGGGCACCTGCATGCTGACTTGGCCCGGCTGACTTCCAGGTGTGTATAAGAAGCAGCGTATTTGTCCAATCCTCatttctcccgagcccgttggggagttgccgCAATGAAacacaattggataccacaaaaatgctttcatttctaaacggtaaacagatatgtatgaaaatctcaaatccaaaatgctggagtatagagacacataaAATGTTTtctcttcactgtccaaatacacaTGGAGGAGAGTGTATGACCATGGCTGCACCAGCCTTTGTGTGCTCTTGTCTGTGGCAGATAGTGAGCATCCTGCATCTGATTATACAGTCATCAGCGAACCCACAAGCAGTAGTTGAAGTCATCATCAGATGTGATGGACTACCTTAAGCAagcagcaagtgtgtgtgtagattttttatttatttgtattgtgCGTGTGTTTTATTTTACTGTATGCGCGCAGTGCATGTTTGTTTGTGCACCGGCCCGTCCAAAGGGCAGCGGGGCTCAGTCTGTTACGGGGAGGTTATTGACTTTTGCTGTGTTGTAGTATTGATCCACTTCCTGCTTGTGACTCTGGGGGTGGAGCATGCTGACCTTAGAGACTGCAGAGGATGAACCATGGGTTGAAGACGTTGGTGTCAAACACAATTCCTGGAGAGCCGCAGTCGGGTCATGTTCACTTGAAACTatttgaacttgtccaataagagtCACTGATTCATTAAGTAGAAGGGAGGAACCAAAACCCACAGACGCTGCAGAGCAGAATCTAAAGGACTGGAGTTTTACTCATGTGGTTTAGGAGTCCAAAAACAcattccttaccccaggataTGTCATAAGGTCACGCTATAGGAACATTTCAGGAAAAGGAGCACCCCGTGTCTGCATTTCATTTTGGATAACATAAACCAGCTTAGGATGCCTCTATTAGAGTCTCACCATGTTCTCTGATAGCAAGTGCTCAGACTTCAAGATGTATTGTGGCGCTGATAGAGCCTAATGTACAGTAAATGGGATTATTTTTAAACGTGTGTTGTTGTAGTCATGTTTCCAGTTGCCTTTAATTTAAAAGTTTATCATGTAAAAAAA

Function

NR:

description
oocyte zinc finger protein XlCOF8.4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599817.2 True 3035 mRNA 0.48 2 44231559 44234933

Neighbor

gene id symbol gene type direction distance location
LOC110521880 LOC106583941 coding upstream 244 44221395 ~ 44231315 (+)
LOC110521879 LOC106600749 coding upstream 25089 44197377 ~ 44206470 (+)
LOC110521878 mvp coding upstream 35223 44169930 ~ 44196336 (+)
LOC110521877 LOC106583943 coding upstream 68870 44146045 ~ 44162689 (+)
LOC110521876 LOC106583944 coding upstream 86111 44124407 ~ 44145448 (+)
LOC110521882 LOC106584009 coding downstream 11909 44246842 ~ 44248418 (+)
LOC110521884 sgf29 coding downstream 26212 44261145 ~ 44269206 (+)
LOC110521885 LOC106583937 coding downstream 37616 44272549 ~ 44289275 (+)
lat NA coding downstream 55503 44290436 ~ 44293436 (+)
LOC110521889 rabep2 coding downstream 185589 44420522 ~ 44431709 (+)
G2239350 NA non-coding upstream 11888 44219466 ~ 44219671 (+)
G2239347 NA non-coding upstream 16405 44214872 ~ 44215154 (+)
G2239346 NA non-coding upstream 17754 44213476 ~ 44213805 (+)
G2239314 NA non-coding upstream 121737 44109406 ~ 44109822 (+)
G2239312 NA non-coding upstream 124165 44107109 ~ 44107394 (+)
G2239363 NA non-coding downstream 6740 44241673 ~ 44242010 (+)
G2239365 NA non-coding downstream 8384 44243317 ~ 44243526 (+)
G2239367 NA non-coding downstream 9666 44244599 ~ 44244832 (+)
G2239372 NA non-coding downstream 18508 44253441 ~ 44255957 (+)
G2238671 LOC100136747 other upstream 608256 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 765730 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1501108 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1678373 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2845566 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 164952 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 321261 44555495 ~ 44563618 (+)
G2239510 NA other downstream 339923 44574856 ~ 44575278 (+)
G2239933 NA other downstream 618768 44853478 ~ 44860893 (+)
G2240165 NA other downstream 729837 44964770 ~ 44965537 (+)

Expression


Co-expression Network