LOC110521882 (LOC106584009)


Basic Information

Item Value
gene id LOC110521882
gene name LOC106584009
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44246842 ~ 44248418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473228.2
GCGGGAGGCGTTGCTGTTAGGGAGTGCCCGTGTGGAGGCAGAGTTAGAGACCAAGCGGTGGTCGGAGCAGGGCAGGAAGCTGCAGAAGTTCAGACCCTGGAGATCACCCAGCTGAAACTGGACAGGTAGAACAACCAGGAGGCCATCAAAAGATAggagggaccctgctctctctccctctgtccgagAGACTGGACTCTTCAGCCcagcttcccctctctcccccacactgGATCCCCAGGAGACAGACTCTTCTCTGGAGGGCCAAGCCCCAAACGGCTCTTTTACAAACCGTAATGGCCGCCACACTGTGGGGAATGTTGATGACTTCCATGCCCTGCAGCAGCAGATCCTAGAGGGACACATCCTCATTGGCAAGATGGAGGCTGCCCTCCAGGCCACTGCCAACCACGCCCTGCTGGAGCTCATCCTGGATAAgcCTGCAGACTCTGGCTAGCACTAAGACCCTGCGGCAGATCCTTGAGGAAGCCAACTCCTTGCTCAGAATGTTCTGGAGGGCAGCCCTGCACAGTTGTGAGGGTACCCTCCGAGCACCATGGTCAGAAACACATACTCCTTATAAAGCATTCATAAAGCATTCATAATGCCTTCATATGCATGACATACAGAGACAATGGGTCACTCTTTGTGTTTGTTTGTAAGAGTTACATTAAAGGGAATTGCTTTCGCTGTTAGCGTGTTATGTGTGTGAAGTTACTGATCATTGTTTAGAGTTTGTGTGCTTTAGTGGTGACTTTGTTAATACATGTCACGTCACTCCAGGTGCAATCAGAGAGGGGTCACACTCACTGCTCTTTACAGGTGTGTGTAGATGTTTGAAATGTGACGGTGTATTTTTTGACTATTTGTGTGTGTCTAGGAGCTGTCTCTAaaggcctagcccaaaccatgaaaaacagccccagaccattattcctcctccaccaaactt
>TU2559953
TCGGAGCAGGGCAGGAAGCTGCAGAAGTTCAGACCCTGGAGATCACCCAGCTGAAACTGGACAGGTAGAACAACCAGGAGGCCATCAAAAGATAggagggaccctgctctctctccctctgtccgagAGACTGGACTCTTCAGCCcagcttcccctctctcccccacactgGATCCCCAGGAGACAGACTCTTCTCTGGAGGGCCAAGCCCCAAACGGCTCTTTTACAAACCGTAATGGCCGCCACACTGTGGGGAATGTTGATGACTTCCATGCCCTGCAGCAGCAGATCCTAGAGGGACACATCCTCATTGGCAAGATGGAGGCTGCCCTCCAGGCCACTGCCAACCACGCCCTGCTGGAGCTCATCCTGGATAAgcCTGCAGACTCTGGCTAGCACTAAGACCCTGCGGCAGATCCTTGAGGAAGCCAACTCCTTGCTCAGAATGTTCTGGAGGGCAGCCCTGCACAGTTGTGAGGGTACCCTCCGAGCACCATGGTCAGAAACACATACTCCTTATAAAGCATTCATAAAGCATTCATAATGCCTTCATATGCATGACATACAGAGACAATGGGTCACTCTTTGTGTTTGTTTGTAAGAGTTACATTAAAGGGAATTGCTTTCGCTGTTAGCGTGTTATGTGTGTGAAGTTACTGATCATTGTTTAGAGTTTGTGTGCTTTAGTGGTGACTTTGTTAATACATGTCACGTCACTCCAGGTGCAATCAGAGAGGGGTCACACTCACTGCTCTTTACAGGTGTGTGTAGATGTTTGAAATGTGACGGTGTATTTTTTGACTATTTGTGTGTGTCTAGGAGCTGTCTCTAaaggcctagcccaaaccatgaaaaacagccccagaccattattcctcctccaccaaactttacagttgccactatgcattggggcaggtagcgttctcctggcatccgccaaatctAGATTCGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473228.2 False 952 mRNA 0.51 3 44246842 44248353
TU2559953 True 956 lncRNA 0.50 3 44246903 44248418

Neighbor

gene id symbol gene type direction distance location
LOC110521881 LOC106583940 coding upstream 11909 44231559 ~ 44234933 (+)
LOC110521880 LOC106583941 coding upstream 15527 44221395 ~ 44231315 (+)
LOC110521879 LOC106600749 coding upstream 40372 44197377 ~ 44206470 (+)
LOC110521878 mvp coding upstream 50506 44169930 ~ 44196336 (+)
LOC110521877 LOC106583943 coding upstream 84153 44146045 ~ 44162689 (+)
LOC110521884 sgf29 coding downstream 12792 44261145 ~ 44269206 (+)
LOC110521885 LOC106583937 coding downstream 24196 44272549 ~ 44289275 (+)
lat NA coding downstream 42083 44290436 ~ 44293436 (+)
LOC110521889 rabep2 coding downstream 172169 44420522 ~ 44431709 (+)
LOC110521892 mk03 coding downstream 267738 44516091 ~ 44531384 (+)
G2239367 NA non-coding upstream 2010 44244599 ~ 44244832 (+)
G2239365 NA non-coding upstream 3316 44243317 ~ 44243526 (+)
G2239363 NA non-coding upstream 4832 44241673 ~ 44242010 (+)
G2239350 NA non-coding upstream 27171 44219466 ~ 44219671 (+)
G2239347 NA non-coding upstream 31688 44214872 ~ 44215154 (+)
G2239372 NA non-coding downstream 5088 44253441 ~ 44255957 (+)
G2239354 NA non-coding downstream 23116 44271469 ~ 44272060 (+)
G2239409 NA non-coding downstream 100552 44348905 ~ 44350220 (+)
G2239414 NA non-coding downstream 124692 44373045 ~ 44374669 (+)
G2239416 NA non-coding downstream 128655 44377008 ~ 44378792 (+)
G2238671 LOC100136747 other upstream 623539 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 781013 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1516391 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1693656 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2860849 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 151532 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 307841 44555495 ~ 44563618 (+)
G2239510 NA other downstream 326503 44574856 ~ 44575278 (+)
G2239933 NA other downstream 605348 44853478 ~ 44860893 (+)
G2240165 NA other downstream 716417 44964770 ~ 44965537 (+)

Expression


Co-expression Network