LOC110521884 (sgf29)


Basic Information

Item Value
gene id LOC110521884
gene name sgf29
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44261145 ~ 44269206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969469.1
ACGAATGAAAGCTCACAAACTACCAAAGATCACGGGggtcggggcctgttcccgagggagccgtatatcctccgtctcgggctcgtcagagtcgtgaaagaagaaacaggattctgctagtccgtgGCAACATCATGTCGGCGGACACCAAAATCGCAGAGCTTTTAACAGAGCTCCATCAACTCATCAAGCAGACGCAGGAGGAGCGGTCGCGCAGTGAACACAACCTGCTCAACATCCAGAAAACACATGAGAGGATGCAGACTGAGAACAAGACCTCCCCTTACTACCGGACTAAGCTGAGGGGACTCTACACCACAGCCAGAGCAGACGCTGAGGCAGAGTGCAGTATTCTTCGTCATGCTCTCGACAAAATTGCAGAGATCAAATCCTTATTGGAGGAGAGGCGAATAGcggCTAAGATGGCAGGGGTGAACAGTGACAATGACCCCCCCAGGAAGACCATGCGGAGGGGGGTGCTGATGACACTGCTCCAACAGTCAGCCATGACGCTCCCGCTGTGGATTGGCAAGCCAGGAGACAGtcctcctcccCTGTGTGGGGCGATGCCAGCCAACAGTGACTACGTGGCCAAGCAAGGGGACAAGGTGGCAGCGCGGGTCAAGGCCGTGGACGGAGACGAACAGTGGATCCTGGCTGAGGTGGTCAGCTACAGCCACTCCACCAACAAGTACGAAGTGGATGACATTGATGAGGAAGGAAAAGAGAGACACACCCTGAGCAGGCGGCGTATCATCCCCCTGCCCCAGTGGAAGGCCAACCCAGAGACGGACCCGGAGGCCCTGTTCAGTAAAGACCAGCTGGTGCTGGCCCTCTACCCCCAGACCACCTGCTTCTACAGAGCCctcatccacacacacccacaccggccCCAGGACGACTACTCAGTGCTGTTTGAGGACACGTCGTACGCAGACGGCTACTCCCCGCCCCTCAACGTAGCTCAGAGATACGTGGTGGCCTGCAAAGAGAACAaaaagaagtaaagaagagactgataaagaggagaagaaagagaggagtcaGGATAAATCAAGGGGACTGTGACTGAAGATACTGTATTTTGTCAGACTTGACAAGTACACTGTGTAGACAAGTGTTCCTAGACAAGTGTTTCCAACCACCCCCCCTCCCCAGAATAACAATGGATTCCATACCTTAACCACACGTATGGACACACTGAGGGCGGgtttcaaataaaataacatcaaatgaaa

Function

symbol description
sgf29 Predicted to enable methylated histone binding activity. Predicted to be involved in histone H3 acetylation. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human SGF29 (SAGA complex associated factor 29).

NR:

description
PREDICTED: SAGA-associated factor 29 homolog isoform X1

GO: NA

KEGG:

id description
K11364 SGF29; SAGA-associated factor 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969469.1 True 1238 mRNA 0.54 11 44261145 44269206

Neighbor

gene id symbol gene type direction distance location
LOC110521882 LOC106584009 coding upstream 12792 44246842 ~ 44248418 (+)
LOC110521881 LOC106583940 coding upstream 26212 44231559 ~ 44234933 (+)
LOC110521880 LOC106583941 coding upstream 29830 44221395 ~ 44231315 (+)
LOC110521879 LOC106600749 coding upstream 54675 44197377 ~ 44206470 (+)
LOC110521878 mvp coding upstream 64809 44169930 ~ 44196336 (+)
LOC110521885 LOC106583937 coding downstream 3343 44272549 ~ 44289275 (+)
lat NA coding downstream 21230 44290436 ~ 44293436 (+)
LOC110521889 rabep2 coding downstream 151316 44420522 ~ 44431709 (+)
LOC110521892 mk03 coding downstream 246885 44516091 ~ 44531384 (+)
LOC110521893 LOC106583904 coding downstream 263213 44532419 ~ 44553025 (+)
G2239372 NA non-coding upstream 5188 44253441 ~ 44255957 (+)
G2239367 NA non-coding upstream 16313 44244599 ~ 44244832 (+)
G2239365 NA non-coding upstream 17619 44243317 ~ 44243526 (+)
G2239363 NA non-coding upstream 19135 44241673 ~ 44242010 (+)
G2239354 NA non-coding downstream 2263 44271469 ~ 44272060 (+)
G2239409 NA non-coding downstream 79699 44348905 ~ 44350220 (+)
G2239414 NA non-coding downstream 103839 44373045 ~ 44374669 (+)
G2239416 NA non-coding downstream 107802 44377008 ~ 44378792 (+)
G2238671 LOC100136747 other upstream 637842 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 795316 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1530694 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1707959 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2875152 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 130679 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 286988 44555495 ~ 44563618 (+)
G2239510 NA other downstream 305650 44574856 ~ 44575278 (+)
G2239933 NA other downstream 584495 44853478 ~ 44860893 (+)
G2240165 NA other downstream 695564 44964770 ~ 44965537 (+)

Expression


Co-expression Network