LOC110521905 (ppp4c)


Basic Information

Item Value
gene id LOC110521905
gene name ppp4c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44738189 ~ 44768317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968820.1
agctgcacaaagaacgGGTGACTGTGTGAAGTATACACACCCTGTGTTTGCGAGGCTCTGTAGGAGACAACTCCAGACCCCAGAGTGAGGATTGTGTGTGAGCCTCTCGCTCCATATGTGTGTGACAATGGGGGACATCAGTGATCTGGACAGACAGATCGAACAACTTAGGCGCTGTGAACTCATCAAGGAAAATGAAGTCAAAGCACTGTGTGCCAAGGCCAGGGAGATTCTGGTAGAGGAGAGTAACGTACAGAGGGTGGACTCTCCAGTTACAGTGTGTGGGGATATTCATGGACAGTTTTATGACCTAAAGGAGTTGTTTAGAGTAGGGGGCGATGTTCCGGAGACAAACTATCTCTTCATGGGTGACTTTGTGGACCGAGGCTTCTACAGCGTGGAGACGTTCCTGCTGCTCCTAGCACTCAAGgtgCGGTATCCAGACAGGATCACTCTGATCCGAGGGAACCACGAGTCACGGCAGATCACACAGGTCTACGGCTTCTATGACGAGTGCCTCCGCAAGTACGGCTCGGTCACCGTGTGGAGATACTGCACCGAGATCTTTGATTACCTGTCCCTCTCTGCCATCATCGACGGCAAGATATTCTGTGTGCATGGTGGCCTTTCTCCCTCTATTCAAACTCTGGACCAGATCAGAACTATCGACAGGAAGCAGGAAGTGCCTCACGATGGCCCCATGTGTGACCTGCTGTGGTCTGACCCAGAAGacaccacAGGGTGGGGGGTGAGCCCGAGGGGGGCGGGCTACCTGTTTGGCAGTGACGTGGTGGCCCAGTTCAATGCGGCCAATGACATCCACATGATCTGCAGGGCCCACCAGCTGGTCATGGAGGGCTACAAGTGGCACTTCAATGAGACAGTGCTAACTGTGTGGTCCGCACCCAACTACTGCTACAGATGTGGTAATGTGGCAGCCATCTTGGAGCTGGATGAGCACCTGCAGAGGGAGTTCATCATATTTGAAGCTGCCCCGCAGGAAACCAGGGGCATTCCCTCCAAAAAGCCAGTGGCAGACTACTTCCTGTGACCTCTCACCCTGGAGGGAATATGGAGCCTTTGGCtgtgttcccctgctcagacgttgcatgcatcaaccaatggttgcgtgccacaTCATTGACTGTCGTCGACTGCTATATTGCTATAActtgatgtggttagctgatacttaAAATGTCTATCCAGgggttgtaagatctggcatgcgtcAGCAATGCCTGGGCAGAGGAACGCGCCCTTTATGTTAGGATGGTTTCTTGTGTCTTGAACCTCTTTGGTTCTGTTTCAAACTGACCCCTAGACCAGGGGtatacaaccctgttcctggagtgctgcAGGTACTGTACAATTGTCTCAAGGCACCACATTGAGCTACTAAGCTTATTtatcagttcagtgattgcctaaattcaaaAAAAATATTCTTCCAGGTTGGTTTAATCAAAAACAGGAAGTGCCTTCTGCACACCAagaccagggttgcctacccctgccCTAGACACTTCTTGATTCCCCACTGTAGAGATGAAAGAGCTGTGTCAGTGTGAGCAATATGGCAGAAACTCCACCTAGCCCTCTATCCACCTACCCTATCAGAGGATGAGGTGGCGCTATTACCATACTGCTGATACTGTCCAGGCCTTGGTTGGAAGATCATGAAGTATCTAGTTGTGACTGCTTTGGGTCTGAATGAATCTGTGCCCATTTCAACTCTTTACAATGGCCATAGTTctttttcttcctcctctcctattAACTTCTCTTATCCCCTCTCGCCGCCATTGAGTTGTTTGGTATTTGCCCTTCCCCCTAATCTTGTAGTATTTTTACATTTGAAAATGTGAACATTGTCCTACAGATGGAAGGATACTTGAAAGGAGATGAAAGAATATTTTAATCTGAAGATATAGGAAATTAACCCATTTCTGGGTTGAATTTTCCATATGCATAATTTCTTACACATTTTTCTTTGATTTTTGTATAACTGTTGTGTAAAGGATGAACTGCAAAACTTATTTTTCTTCAGTTTGCTATTTCAGTGTCCTGTTTGCTTGTTTTCTATAACTCAGTTTTCAAAAACATTGTTCTCGATTGCTACTCAGCCTAAACAGCACCtacactcaaacaaaaataaagTAACTGGTTAAATGGGATCACTACACACATTTTGTTTCTTTCTGTACCTTGTTGATGCCTATTGATCCACAAATCTCTGTAGGGTTCACTGTTGACTTTTGATATTGTGAAAATAAAATCTTTTTGTATCAATCTCCTTTA
>XM_036968817.1
TTCATGACTACAATTTGCGCGTCCCCGACAGCGGAAGTTGCAGACAGAGTTCTTCCGGCGGTGGTTATGTGAACCGGTGAAAAAAGAAAATAACCGTGGAATAAAACAGCTGTATGTCTGTATTTCGAGTTCTTCTTCTCCAATATTCAAAGGGTGACTGTGTGAAGTATACACACCCTGTGTTTGCGAGGCTCTGTAGGAGACAACTCCAGACCCCAGAGTGAGGATTGTGTGTGAGCCTCTCGCTCCATATGTGTGTGACAATGGGGGACATCAGTGATCTGGACAGACAGATCGAACAACTTAGGCGCTGTGAACTCATCAAGGAAAATGAAGTCAAAGCACTGTGTGCCAAGGCCAGGGAGATTCTGGTAGAGGAGAGTAACGTACAGAGGGTGGACTCTCCAGTTACAGTGTGTGGGGATATTCATGGACAGTTTTATGACCTAAAGGAGTTGTTTAGAGTAGGGGGCGATGTTCCGGAGACAAACTATCTCTTCATGGGTGACTTTGTGGACCGAGGCTTCTACAGCGTGGAGACGTTCCTGCTGCTCCTAGCACTCAAGgtgCGGTATCCAGACAGGATCACTCTGATCCGAGGGAACCACGAGTCACGGCAGATCACACAGGTCTACGGCTTCTATGACGAGTGCCTCCGCAAGTACGGCTCGGTCACCGTGTGGAGATACTGCACCGAGATCTTTGATTACCTGTCCCTCTCTGCCATCATCGACGGCAAGATATTCTGTGTGCATGGTGGCCTTTCTCCCTCTATTCAAACTCTGGACCAGATCAGAACTATCGACAGGAAGCAGGAAGTGCCTCACGATGGCCCCATGTGTGACCTGCTGTGGTCTGACCCAGAAGacaccacAGGGTGGGGGGTGAGCCCGAGGGGGGCGGGCTACCTGTTTGGCAGTGACGTGGTGGCCCAGTTCAATGCGGCCAATGACATCCACATGATCTGCAGGGCCCACCAGCTGGTCATGGAGGGCTACAAGTGGCACTTCAATGAGACAGTGCTAACTGTGTGGTCCGCACCCAACTACTGCTACAGATGTGGTAATGTGGCAGCCATCTTGGAGCTGGATGAGCACCTGCAGAGGGAGTTCATCATATTTGAAGCTGCCCCGCAGGAAACCAGGGGCATTCCCTCCAAAAAGCCAGTGGCAGACTACTTCCTGTGACCTCTCACCCTGGAGGGAATATGGAGCCTTTGGCtgtgttcccctgctcagacgttgcatgcatcaaccaatggttgcgtgccacaTCATTGACTGTCGTCGACTGCTATATTGCTATAActtgatgtggttagctgatacttaAAATGTCTATCCAGgggttgtaagatctggcatgcgtcAGCAATGCCTGGGCAGAGGAACGCGCCCTTTATGTTAGGATGGTTTCTTGTGTCTTGAACCTCTTTGGTTCTGTTTCAAACTGACCCCTAGACCAGGGGtatacaaccctgttcctggagtgctgcAGGTACTGTACAATTGTCTCAAGGCACCACATTGAGCTACTAAGCTTATTtatcagttcagtgattgcctaaattcaaaAAAAATATTCTTCCAGGTTGGTTTAATCAAAAACAGGAAGTGCCTTCTGCACACCAagaccagggttgcctacccctgccCTAGACACTTCTTGATTCCCCACTGTAGAGATGAAAGAGCTGTGTCAGTGTGAGCAATATGGCAGAAACTCCACCTAGCCCTCTATCCACCTACCCTATCAGAGGATGAGGTGGCGCTATTACCATACTGCTGATACTGTCCAGGCCTTGGTTGGAAGATCATGAAGTATCTAGTTGTGACTGCTTTGGGTCTGAATGAATCTGTGCCCATTTCAACTCTTTACAATGGCCATAGTTctttttcttcctcctctcctattAACTTCTCTTATCCCCTCTCGCCGCCATTGAGTTGTTTGGTATTTGCCCTTCCCCCTAATCTTGTAGTATTTTTACATTTGAAAATGTGAACATTGTCCTACAGATGGAAGGATACTTGAAAGGAGATGAAAGAATATTTTAATCTGAAGATATAGGAAATTAACCCATTTCTGGGTTGAATTTTCCATATGCATAATTTCTTACACATTTTTCTTTGATTTTTGTATAACTGTTGTGTAAAGGATGAACTGCAAAACTTATTTTTCTTCAGTTTGCTATTTCAGTGTCCTGTTTGCTTGTTTTCTATAACTCAGTTTTCAAAAACATTGTTCTCGATTGCTACTCAGCCTAAACAGCACCtacactcaaacaaaaataaagTAACTGGTTAAATGGGATCACTACACACATTTTGTTTCTTTCTGTACCTTGTTGATGCCTATTGATCCACAAATCTCTGTAGGGTTCACTGTTGACTTTTGATATTGTGAAAATAAAATCTTTTTGTATCAATCTCCTTTA
>XM_036968818.1
ACTACAATTTGCGCGTCCCCGACAGCGGAAGTTGCAGACAGAGTTCTTCCGGCGGTGGTTATGTGAACCGGTGAAAAAAGAAAATAACCGTGGAATAAAACAGCTGTATGTCTGTATTTCGAGTTCTTCTTCTCCAATATTCAAAGATCCCTCTCTATTGCACCAATCTGCCGCTCTCTTTTTGTGACTAGAACTGCCTGAACAGctagagagtgtttgtgtgttctcGGACCAGGGTGACTGTGTGAAGTATACACACCCTGTGTTTGCGAGGCTCTGTAGGAGACAACTCCAGACCCCAGAGTGAGGATTGTGTGTGAGCCTCTCGCTCCATATGTGTGTGACAATGGGGGACATCAGTGATCTGGACAGACAGATCGAACAACTTAGGCGCTGTGAACTCATCAAGGAAAATGAAGTCAAAGCACTGTGTGCCAAGGCCAGGGAGATTCTGGTAGAGGAGAGTAACGTACAGAGGGTGGACTCTCCAGTTACAGTGTGTGGGGATATTCATGGACAGTTTTATGACCTAAAGGAGTTGTTTAGAGTAGGGGGCGATGTTCCGGAGACAAACTATCTCTTCATGGGTGACTTTGTGGACCGAGGCTTCTACAGCGTGGAGACGTTCCTGCTGCTCCTAGCACTCAAGgtgCGGTATCCAGACAGGATCACTCTGATCCGAGGGAACCACGAGTCACGGCAGATCACACAGGTCTACGGCTTCTATGACGAGTGCCTCCGCAAGTACGGCTCGGTCACCGTGTGGAGATACTGCACCGAGATCTTTGATTACCTGTCCCTCTCTGCCATCATCGACGGCAAGATATTCTGTGTGCATGGTGGCCTTTCTCCCTCTATTCAAACTCTGGACCAGATCAGAACTATCGACAGGAAGCAGGAAGTGCCTCACGATGGCCCCATGTGTGACCTGCTGTGGTCTGACCCAGAAGacaccacAGGGTGGGGGGTGAGCCCGAGGGGGGCGGGCTACCTGTTTGGCAGTGACGTGGTGGCCCAGTTCAATGCGGCCAATGACATCCACATGATCTGCAGGGCCCACCAGCTGGTCATGGAGGGCTACAAGTGGCACTTCAATGAGACAGTGCTAACTGTGTGGTCCGCACCCAACTACTGCTACAGATGTGGTAATGTGGCAGCCATCTTGGAGCTGGATGAGCACCTGCAGAGGGAGTTCATCATATTTGAAGCTGCCCCGCAGGAAACCAGGGGCATTCCCTCCAAAAAGCCAGTGGCAGACTACTTCCTGTGACCTCTCACCCTGGAGGGAATATGGAGCCTTTGGCtgtgttcccctgctcagacgttgcatgcatcaaccaatggttgcgtgccacaTCATTGACTGTCGTCGACTGCTATATTGCTATAActtgatgtggttagctgatacttaAAATGTCTATCCAGgggttgtaagatctggcatgcgtcAGCAATGCCTGGGCAGAGGAACGCGCCCTTTATGTTAGGATGGTTTCTTGTGTCTTGAACCTCTTTGGTTCTGTTTCAAACTGACCCCTAGACCAGGGGtatacaaccctgttcctggagtgctgcAGGTACTGTACAATTGTCTCAAGGCACCACATTGAGCTACTAAGCTTATTtatcagttcagtgattgcctaaattcaaaAAAAATATTCTTCCAGGTTGGTTTAATCAAAAACAGGAAGTGCCTTCTGCACACCAagaccagggttgcctacccctgccCTAGACACTTCTTGATTCCCCACTGTAGAGATGAAAGAGCTGTGTCAGTGTGAGCAATATGGCAGAAACTCCACCTAGCCCTCTATCCACCTACCCTATCAGAGGATGAGGTGGCGCTATTACCATACTGCTGATACTGTCCAGGCCTTGGTTGGAAGATCATGAAGTATCTAGTTGTGACTGCTTTGGGTCTGAATGAATCTGTGCCCATTTCAACTCTTTACAATGGCCATAGTTctttttcttcctcctctcctattAACTTCTCTTATCCCCTCTCGCCGCCATTGAGTTGTTTGGTATTTGCCCTTCCCCCTAATCTTGTAGTATTTTTACATTTGAAAATGTGAACATTGTCCTACAGATGGAAGGATACTTGAAAGGAGATGAAAGAATATTTTAATCTGAAGATATAGGAAATTAACCCATTTCTGGGTTGAATTTTCCATATGCATAATTTCTTACACATTTTTCTTTGATTTTTGTATAACTGTTGTGTAAAGGATGAACTGCAAAACTTATTTTTCTTCAGTTTGCTATTTCAGTGTCCTGTTTGCTTGTTTTCTATAACTCAGTTTTCAAAAACATTGTTCTCGATTGCTACTCAGCCTAAACAGCACCtacactcaaacaaaaataaagTAACTGGTTAAATGGGATCACTACACACATTTTGTTTCTTTCTGTACCTTGTTGATGCCTATTGATCCACAAATCTCTGTAGGGTTCACTGTTGACTTTTGATATTGTGAAAATAAAATCTTTTTGTATCAATCTCCTTTA
>XM_036968819.1
ACAGCGGAAGTTGCAGACAGAGTTCTTCCGGCGGTGGTTATGTGAACCGGTGAAAAAAGAAAATAACCGTGGAATAAAACAGCTGTATGTCTGTATTTCGAGTTCTTCTTCTCCAATATTCAAAGAACTGCCTGAACAGctagagagtgtttgtgtgttctcGGACCAGGGTGACTGTGTGAAGTATACACACCCTGTGTTTGCGAGGCTCTGTAGGAGACAACTCCAGACCCCAGAGTGAGGATTGTGTGTGAGCCTCTCGCTCCATATGTGTGTGACAATGGGGGACATCAGTGATCTGGACAGACAGATCGAACAACTTAGGCGCTGTGAACTCATCAAGGAAAATGAAGTCAAAGCACTGTGTGCCAAGGCCAGGGAGATTCTGGTAGAGGAGAGTAACGTACAGAGGGTGGACTCTCCAGTTACAGTGTGTGGGGATATTCATGGACAGTTTTATGACCTAAAGGAGTTGTTTAGAGTAGGGGGCGATGTTCCGGAGACAAACTATCTCTTCATGGGTGACTTTGTGGACCGAGGCTTCTACAGCGTGGAGACGTTCCTGCTGCTCCTAGCACTCAAGgtgCGGTATCCAGACAGGATCACTCTGATCCGAGGGAACCACGAGTCACGGCAGATCACACAGGTCTACGGCTTCTATGACGAGTGCCTCCGCAAGTACGGCTCGGTCACCGTGTGGAGATACTGCACCGAGATCTTTGATTACCTGTCCCTCTCTGCCATCATCGACGGCAAGATATTCTGTGTGCATGGTGGCCTTTCTCCCTCTATTCAAACTCTGGACCAGATCAGAACTATCGACAGGAAGCAGGAAGTGCCTCACGATGGCCCCATGTGTGACCTGCTGTGGTCTGACCCAGAAGacaccacAGGGTGGGGGGTGAGCCCGAGGGGGGCGGGCTACCTGTTTGGCAGTGACGTGGTGGCCCAGTTCAATGCGGCCAATGACATCCACATGATCTGCAGGGCCCACCAGCTGGTCATGGAGGGCTACAAGTGGCACTTCAATGAGACAGTGCTAACTGTGTGGTCCGCACCCAACTACTGCTACAGATGTGGTAATGTGGCAGCCATCTTGGAGCTGGATGAGCACCTGCAGAGGGAGTTCATCATATTTGAAGCTGCCCCGCAGGAAACCAGGGGCATTCCCTCCAAAAAGCCAGTGGCAGACTACTTCCTGTGACCTCTCACCCTGGAGGGAATATGGAGCCTTTGGCtgtgttcccctgctcagacgttgcatgcatcaaccaatggttgcgtgccacaTCATTGACTGTCGTCGACTGCTATATTGCTATAActtgatgtggttagctgatacttaAAATGTCTATCCAGgggttgtaagatctggcatgcgtcAGCAATGCCTGGGCAGAGGAACGCGCCCTTTATGTTAGGATGGTTTCTTGTGTCTTGAACCTCTTTGGTTCTGTTTCAAACTGACCCCTAGACCAGGGGtatacaaccctgttcctggagtgctgcAGGTACTGTACAATTGTCTCAAGGCACCACATTGAGCTACTAAGCTTATTtatcagttcagtgattgcctaaattcaaaAAAAATATTCTTCCAGGTTGGTTTAATCAAAAACAGGAAGTGCCTTCTGCACACCAagaccagggttgcctacccctgccCTAGACACTTCTTGATTCCCCACTGTAGAGATGAAAGAGCTGTGTCAGTGTGAGCAATATGGCAGAAACTCCACCTAGCCCTCTATCCACCTACCCTATCAGAGGATGAGGTGGCGCTATTACCATACTGCTGATACTGTCCAGGCCTTGGTTGGAAGATCATGAAGTATCTAGTTGTGACTGCTTTGGGTCTGAATGAATCTGTGCCCATTTCAACTCTTTACAATGGCCATAGTTctttttcttcctcctctcctattAACTTCTCTTATCCCCTCTCGCCGCCATTGAGTTGTTTGGTATTTGCCCTTCCCCCTAATCTTGTAGTATTTTTACATTTGAAAATGTGAACATTGTCCTACAGATGGAAGGATACTTGAAAGGAGATGAAAGAATATTTTAATCTGAAGATATAGGAAATTAACCCATTTCTGGGTTGAATTTTCCATATGCATAATTTCTTACACATTTTTCTTTGATTTTTGTATAACTGTTGTGTAAAGGATGAACTGCAAAACTTATTTTTCTTCAGTTTGCTATTTCAGTGTCCTGTTTGCTTGTTTTCTATAACTCAGTTTTCAAAAACATTGTTCTCGATTGCTACTCAGCCTAAACAGCACCtacactcaaacaaaaataaagTAACTGGTTAAATGGGATCACTACACACATTTTGTTTCTTTCTGTACCTTGTTGATGCCTATTGATCCACAAATCTCTGTAGGGTTCACTGTTGACTTTTGATATTGTGAAAATAAAATCTTTTTGTATCAATCTCCTTTA

Function

symbol description
ppp4c Enables protein serine/threonine phosphatase activity. Involved in regulation of double-strand break repair via homologous recombination. Located in cytosol; nucleoplasm; and plasma membrane.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 4 catalytic subunit

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0007420 brain development biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968820.1 False 2301 mRNA 0.47 9 44738189 44768317
XM_036968817.1 False 2437 mRNA 0.46 9 44755087 44768317
XM_036968818.1 False 2520 mRNA 0.47 9 44755093 44768317
XM_036968819.1 True 2454 mRNA 0.46 9 44755114 44768317

Neighbor

gene id symbol gene type direction distance location
LOC110521904 aldoa coding upstream 4879 44721937 ~ 44733310 (+)
LOC110521902 LOC106583907 coding upstream 37607 44683730 ~ 44700582 (+)
LOC110521899 rnf25 coding upstream 65548 44670717 ~ 44672641 (+)
LOC118945806 NA coding upstream 78180 44657499 ~ 44660097 (+)
LOC110521898 LOC106600727 coding upstream 84512 44636022 ~ 44653677 (+)
LOC110521906 NA coding downstream 8235 44776552 ~ 44778877 (+)
LOC110521907 LOC106583912 coding downstream 11633 44779950 ~ 44783083 (+)
LOC110521908 LOC106583914 coding downstream 15893 44784210 ~ 44803525 (+)
LOC110521014 rcn3 coding downstream 70070 44838387 ~ 44848354 (+)
LOC110521916 prmt1 coding downstream 363443 45131760 ~ 45139316 (+)
G2239865 rnf25 non-coding upstream 65613 44658885 ~ 44672576 (+)
G2239549 NA non-coding upstream 147158 44590730 ~ 44591031 (+)
G2239548 NA non-coding upstream 148117 44589837 ~ 44590072 (+)
G2239925 NA non-coding downstream 4949 44773266 ~ 44773509 (+)
G2239950 NA non-coding downstream 54867 44823184 ~ 44823428 (+)
G2239953 NA non-coding downstream 58645 44826962 ~ 44827187 (+)
G2239956 LOC106583913 non-coding downstream 62568 44830885 ~ 44835200 (+)
G2239966 NA non-coding downstream 81564 44849881 ~ 44850130 (+)
G2239510 NA other upstream 162911 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 174571 44555495 ~ 44563618 (+)
G2239435 LOC106583900 other upstream 310503 44399885 ~ 44427686 (+)
G2238671 LOC100136747 other upstream 1114886 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 1272360 43440853 ~ 43465829 (+)
G2239933 NA other downstream 85384 44853478 ~ 44860893 (+)
G2240165 NA other downstream 196453 44964770 ~ 44965537 (+)
G2240221 LOC106583920 other downstream 289700 45058017 ~ 45125710 (+)
LOC110521020 LOC107658484 other downstream 1392887 46161172 ~ 46190655 (+)

Expression


Co-expression Network