LOC110521917 (LOC106583923)


Basic Information

Item Value
gene id LOC110521917
gene name LOC106583923
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45150366 ~ 45170704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599877.2
CGCGACAGTGTTGTCGCTTTACGTCATCCCGCCATTTTAAGTTGAGGACAAATATTTTTTCTGGCAAGAAGCTAACCAAGCTGAAGCTCAAGTATATTCAACTGTGGGGAAACATCTTGCGTTGAACAATTAGAGTGCACGCTCTTATTCCACGTTGCCTGATTCGGGCTCTCTGAGTTTTAAAGGGATTGAATGAAGAGTTAAGGTGAAAGATGACCCAGTTTTTACCCCCCAATCTGCTGGCCCTATTTGCACCGCGGGACCCCATACCATTTCTGACCCAGTTGGAGAAGCTTCCACATGAGAAACACCACAACCAACCATACTGTGGCATCGCTCCCTTCATCAGGCACTTTGAGGATCCCAGAGATGCCCCTCCCCCTACTAGGGCAGAAACTCGTGATGAGAGGTTGGAGAGAAAGAGGAGGGAGAAGATCGAGAGGAGGCAGACGGTTGTGGAGACAGAACTGAAACTCTGGGATCCACACAATGACCCCAATGCTCAGGGGGATGCCTTCAAGACCCTGTTTGTGGCTCGTGTTAATTATGACACAACGGAATCCAAGCTTCGCCGTGAGTTTGAGGTCTATGGACCCATCAAAAGGATCTACATAGTCTACAACAAGCGGTCAGGGAAGCCCAGAGGCTACGCCTTCATAGAGTACGAGCACGAGAGAGACATGCACTctgccTACAAGCATGCAGACGGGAAGAAGATCGACGGAAGGAGAGTGCTGGTGGATGTGGAGAGAGGCCGCACTGTGAAGGGATGGCATCCCCGCAGGCTAGGCGGTGGTCTTGgtgggacaaggagaggtgggGCTGACGTCAACATCAAGCACTCTGGAAGAGACGACACCTCACGTTATGATGACCATCCCCCAATTGGAGGGGAACGTGAGCGCGAACGTGGACCTGAGCCCAGAGGGGAACGCAGAGAGCGCAGCCGTGAGCGCGAACGGGGTGTGGAGAAAGAGCGCGGTGGCGAGAGACGACGGTCCCGGTCCCGGGAAAGACGCAGGCGCAGCTCCCGCTCCAGGGAGAGGGGTGACAGGGGTCTGGTCCAGGCTGGGCCCGCAGAGGAGAGTGTAGGGGGTGGCAgaaggagagaccgagagagggagagggggggaggagggccAGGGGGAGACAGTCATagcagggagaggagcagagacaaaggtgaaaggaagaggaggagccgCAGTCGAGAGCGCAAGCGAGACCGGGAGAGGGGCAAGGGTGGTGAAGGTGATGAGGGCTTGGTGCTAGGAGATGGTATgataggggagggaggagagaggatgcctgAAGAGCCTAGTGTGGgtgaggaagtgggagaggagcGCGGCGGGAGGGagcgggacagagacagggagcggGACCGTGACCGGAGGCGCAGCCACAGGGACAAGGACCGTGAGAGGGACCGTGAGAGGCACAGGGGCgacagggagaaagacagggagcataagagagacagggagcgggGTGGCGGGGAGCGCAGGGAGGACCGGCATGGCTCTCTCCTGCTCCCCTCGGCCGAGCAGAACGACGTGGGTAACGGGGATGAGGGCGACGCGCCGCCCCAGCCAGAAGAGAACAGCCAGGATGGGTTGATGATGGACCAAGAGTCGGTGCAATCGGGGGAGGGTTACGTTTCCAATGAGAACGGCTACAAGGTGGAGACCCAGGCAGAAGAGTATTAAGAGGGGCTTTGCCATCTTTACTAATTTCctttaaaaaatacatgtatCCAACACAAACTCACATACTCCTTCCCTGTTAGTGTGAAGGATATTGTAATGAGCTGCTGCCCTGTTAGAAACCACAACGGCGCTGTGTAGGCATAAGAAACAAACTGTCCGTTTTATAGGGTAAGTAGGGTTTTGTTTCTTCTGTATTTGAACCCCAAGGACGAGGTCCACACCACAATTATTTCAAACCCGTCCCTCGGTACCAAACTGAGAACGGTGCTCACTGTCCCTTAACATTCACGCTCTCCCCCAACCGGAACTTTAATCTCACATTCTGCTCTGTCAAGTACTTAATTGTCTGATTACAATCCCTTCACGAGCGAGGCAGAGATGGCGTAGTTAGGGTGAAATATTTGTTTCTCTTTTTCTTAATCTCAGTTGGTGTATTTTTCTTTATTCAACCAGGGTTTTATTTTTATTGGGGTTACGTTTTGGTTTTATTTAACATTTCCCCCCATGTGGTTTGTATGAGTCCATGTTTGTTAGATTCTTTTTTTTCCTTCATAATTTTGGAGCCTTCATGTTCCTTTTACTTTAAGTACAAACCTGAGAACATCTTACTCAACTGTCTGGACACATGTCTACCCTGAAGAAAATGTACAGCAacagctaggtttccattcaattggcgacagattttcatgcacaTATTCTTGAATCTGCCTAAAAACATGCGCATGTTTCCATCCTATTGACTTGGTGCAAATAAAAGGCTGTGTGATGTAGTGCAAATTAAAAGCATTTtgtggttaaattcccatgtatcAAAAATGAAAAACTAGTTAAATGGGtttcatcacattttcaactccaCTGATTGCGTTATAGTGAGTGTGCTCACTTTGGTATTGGCATGTGTGCTCTAACCAATAGCACGATCTGtgtgctgttggctagagcgcacataTTGCCTACATGACATCATATGgacaatattattttttttttttaacaaccaAGCATAGATTATCATGTCACCAGACGAAAACCCTAGATATTTATTGGTTAGTAGCATCAAGCTAATTACCTTGtgctttcaccaccctgtgaagttcacttatttcatctgtagtttAATGAACAGCATGCTTTCCCGACTAGTTGTTGTGGGAGGACCacatgactccaagtttacttcaatatgatggttattgtatcaatatttgcgcataaaagcATTTCCACTGTTTTTCTAATTAATTTTACTTACAATATTCTACTTTGTCtagtgtgttttttgttttgacaTTTGGATAATTTACCCCAAAAATGTCTATGGCCTGTCATTACTTTTTTGTATCCGATGTCCTTTACTCACATAAAGGTTGGCTGGAAACCTGGTTATTGAAAATGTTTGTGGGAGTAAGGAAATGTGTTGCAAAGTGCATGTCCAAGAGTTGGCAAATATTGCTCATTTTTATTCTGTAAAGCAAGACTGGGGAACCCTCAATGGAATTGTTCTGATTCTCCTGAAATAAAGTTTTGTTTTTAAACATTTA

Function

NR:

description
U1 small nuclear ribonucleoprotein 70 kDa-like

GO: NA

KEGG:

id description
K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599877.2 True 3256 mRNA 0.48 10 45150366 45170704

Neighbor

gene id symbol gene type direction distance location
LOC110521916 prmt1 coding upstream 11050 45131760 ~ 45139316 (+)
LOC110521014 rcn3 coding upstream 302012 44838387 ~ 44848354 (+)
LOC110521908 LOC106583914 coding upstream 346841 44784210 ~ 44803525 (+)
LOC110521907 LOC106583912 coding upstream 367283 44779950 ~ 44783083 (+)
LOC110521906 NA coding upstream 371489 44776552 ~ 44778877 (+)
LOC110521918 LOC106583924 coding downstream 134810 45305514 ~ 45307830 (+)
LOC110521919 NA coding downstream 187148 45357852 ~ 45365288 (+)
LOC110521920 LOC106583926 coding downstream 197992 45368696 ~ 45382880 (+)
LOC110521922 hn1l coding downstream 276846 45447550 ~ 45461566 (+)
LOC110521924 mapk8ip3 coding downstream 309830 45480534 ~ 45557435 (+)
G2240273 NA non-coding upstream 1714 45148445 ~ 45148652 (+)
G2240272 NA non-coding upstream 2823 45147026 ~ 45147543 (+)
G2240270 NA non-coding upstream 5464 45144640 ~ 45144902 (+)
G2240269 NA non-coding upstream 7099 45143060 ~ 45143267 (+)
G2240268 NA non-coding upstream 7619 45142528 ~ 45142747 (+)
G2240456 NA non-coding downstream 59581 45230285 ~ 45321010 (+)
G2240592 NA non-coding downstream 161841 45332545 ~ 45332769 (+)
G2240599 NA non-coding downstream 165364 45336068 ~ 45336436 (+)
G2240605 NA non-coding downstream 167268 45337972 ~ 45338187 (+)
G2240607 NA non-coding downstream 167647 45338351 ~ 45338599 (+)
G2240221 LOC106583920 other upstream 24656 45058017 ~ 45125710 (+)
G2240165 NA other upstream 184829 44964770 ~ 44965537 (+)
G2239933 NA other upstream 290030 44853478 ~ 44860893 (+)
G2239510 NA other upstream 575088 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 586748 44555495 ~ 44563618 (+)
LOC110521020 LOC107658484 other downstream 990500 46161172 ~ 46190655 (+)

Expression


Co-expression Network