LOC110521928 (LOC106583890)


Basic Information

Item Value
gene id LOC110521928
gene name LOC106583890
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45844459 ~ 45862555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599902.2
AGAAACAGTGAAGGTTTTCCTCTTCTCTTTTTTAGAGACGATAAAATAAAGGGACTGCATAATTTAGAATCTGGAGACAAACGGAAGGATTTAGGAAATAACGTCGTCACCTTAGCTTCGTGCTCTTGGTGTTTTTGTTAGGTAGCCTAACTTCCCTTCTCAGTGGATATGCATCGGTCCCATCTGTAGCACTCTATGGTGCCCTTAACTGCGCCTCGAGTTTATGGAACTCCGCTCAATGATGACAATGAGTTCATTGTCGGACAGTCTGGTTTCTTCTGATCCCTCAAAATCGGCCTTTCTGGAGTTCGGACACGGCTATCCCGGGCACCAGCAGCATCCCCCCGGCTTATCCCACAACATCTATCCAGTGCACGACTTGCATCCCGTCGGACCCTCGCAGCACGACAGCTCCTTTTCTTCCAGCGCGTCATCCTATGGCCGCACGCTAGCCTACCCCTACCACAGCACTGTAAACGCACACCACCCAAGTACCTACCTGCCATACCAGCACAGTAGCCACAACAACGGTCTGGGACGCACGAGaatagaggaaacagAGCTTGAGAAGCCAACCACGGTGATCGAGAACGGAGAAATTAGACTGAACGGAAAAGGGAAGAAGATCCGAAAACCTCGGACCATCTACTCAAGCTTACAACTGCAAGCGCTCAACCAGAGATTCCAGCAAACCCAATACCTTGCGCTACCTGAGCGAGCCAATCTGGCAGCAAAATTGGGACTAACTCAAATGCAGGTTAAGATATGGTTCCAGAACAAACGCTCCAAGTACAAGAAGATCATGAAGCATGGCCCGGGCGGACCGGAGGGAGAACACCTGCACCCTGGGTCATCTGGGTCTCCGTGTTCCCCGGGGATGCCGCCACTTTGGGACGTTTCCATGGCAAATAAGGGGACGCCTGCGCAATCCGGTGGATACATGAACAATTTCGGACACTGGTACCCAAGCCACCACCAGGATTGTATGCCGAGAACTCAAATTATGTGATGGGATGTGGACAATGGGATGGAATTCTATCCGCTCTCCTTAACTGACTTTACTCAATCTCAACATTTAGATTCGTGTTTTGTCTCCTCTTGTACATGAACCGTGTAGCATATCCCCTTTTAAATGTAGCTTCAAGCCACAGCTATCACATTAGAGTCTTAATTTTTGAAACGGACGTTTAAAGGTCTTTTGCTTGAATTTCATCCGAGGTTTTGCCTACAATTTCATGGACATGAAGAAATGACTGCACGGATTTTGCCTTGGGGGCTTATGTGGATCTGGAATTTGAATGCAGTTCAGTTTCAAATAAAGCCTCAGTGGTCAACTATGCACTGCAATAATATCTATTTTTACGAAATGAGCAATCCGAAGATTTCAGAAGTTTGAGCATGAaaatgcctaaccct

Function

NR:

description
homeobox protein Dlx4a-like

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599902.2 True 1416 mRNA 0.48 3 45844459 45862555

Neighbor

gene id symbol gene type direction distance location
LOC110521924 mapk8ip3 coding upstream 287024 45480534 ~ 45557435 (+)
LOC110521922 hn1l coding upstream 382893 45447550 ~ 45461566 (+)
LOC110521920 LOC106583926 coding upstream 461579 45368696 ~ 45382880 (+)
LOC110521919 NA coding upstream 479171 45357852 ~ 45365288 (+)
LOC110521918 LOC106583924 coding upstream 536629 45305514 ~ 45307830 (+)
LOC110521931 LOC106600938 coding downstream 65724 45928279 ~ 45933944 (+)
LOC110521932 LOC106583880 coding downstream 72688 45935243 ~ 45980319 (+)
LOC110521019 tr-alpha coding downstream 200328 46062883 ~ 46088097 (+)
LOC110521935 NA coding downstream 277383 46139938 ~ 46146858 (+)
LOC118945812 NA coding downstream 290827 46153382 ~ 46157357 (+)
G2241214 NA non-coding upstream 2468 45841603 ~ 45841991 (+)
G2241199 NA non-coding upstream 16081 45828144 ~ 45828378 (+)
G2241191 NA non-coding upstream 21919 45822337 ~ 45822540 (+)
G2241186 NA non-coding upstream 26343 45817850 ~ 45818116 (+)
G2241177 NA non-coding upstream 32493 45811559 ~ 45811966 (+)
G2241240 NA non-coding downstream 3276 45865831 ~ 45866043 (+)
G2241291 NA non-coding downstream 58964 45921519 ~ 45926697 (+)
G2241375 NA non-coding downstream 119283 45981838 ~ 45985885 (+)
G2241380 NA non-coding downstream 127124 45989679 ~ 45989979 (+)
G2241382 NA non-coding downstream 129465 45992020 ~ 45992254 (+)
G2240221 LOC106583920 other upstream 718749 45058017 ~ 45125710 (+)
G2240165 NA other upstream 878922 44964770 ~ 44965537 (+)
G2239933 NA other upstream 984123 44853478 ~ 44860893 (+)
G2239510 NA other upstream 1269181 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 1280841 44555495 ~ 44563618 (+)
LOC110521020 LOC107658484 other downstream 298649 46161172 ~ 46190655 (+)

Expression


Co-expression Network