LOC110521929 (LOC106583891)


Basic Information

Item Value
gene id LOC110521929
gene name LOC106583891
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45875271 ~ 45885821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521929
AAGCATCCACTCCCCTCGCTCTGTAAATTTGAGTTCAGTTGAGTTCAGTTGCCGCCACAGTGCAGTGCAGTCTCGCCGAGGGACTTTGGATGGGCTCTGAGGAGTTCGATGCTCCACAATAGGCCTATTGTTTTGGTTTTATTTTGGGAGTTTATGTTTTCTTTTCAAACTTCTATTTCAACTTACTGCGCATTTCTTACAAGTCTCCACACTTTCTGGAGGTTTTTATTAGGAGAGTGAAGGAGGGCGGTGCAGGATGAATGGAACTACTTCTGAGAAGGCGGCATCGAGCCTGTCGTCTGATCTCCACGCCACAGTGAGCTGTCCAATGATTTCCCGACGCTGCCAAAGTCTTCTCCCATGGACATGGGGTTCTACAGCGGCCAGACGATGCACAGCCACCACGGCTACTACCCCAGCCACGGCCAGTCCTACTCGCAACCAATGAAACCATCCTCGTATCATCACCATTACAATCTCCATGGGATTGGGGTATCGGGGGCCTACATTGCAAAATCGGAATACCCTTATCCCCATAAGCAATACGCTCATTATACCCGAGACATACAGTCACATCTCCAAGATATCGcGAAAGAGGAACCAGAGCCTGAGGTGAGAATGGTCAACGGAAAGCCTAGAAAAATCAGAAAACCTCGCACCATATATTCTAGTTACCAGCTCGCTGCGTTGCAACATCGCTTTCAGGGAGCTCAGTATTTGTCTCTTCCTGAGAGAGCCGAACTAGCGGCTCATCTCGGCGTGACACAAACACAGGTCAAGATCTGGTTCCAGAATCGGCGTTCCAAATTCAAGAAGCTGTACACATACGGGGAAGTTCCACTGGACCACAGCCCAGGAGCCAGTGACTCTATGTCCTGCAATTCACCCCCGTCCCTGGCCATTTGGGACAGTAGTATACCCACAGACCCTGCAACTAGAGAGCAGGCTCCCCAGCCCTCCCTCAGCTCCTCTCTATGTTATGTGGAGGACTACACTCATCACTGGTATCAACAGACCTCACAGTCACGTTCACAGCACTCAGGACTGGTTCTTCAGCACACAACACTACCAAAGAATATGGGGGCGGTGTACTAATACAAAACGTATCGGAACAAGCTGTGGTCCAACAACATGGCCATTTATTGGAAATAAAGCCTAGAGGGTGTGTGCCAAAACAGAGGGCTGAAGTTCACAGACAAGTTGGGAAACATGCACAAGGACTTATTGTCTCTGTTGTTCCTTTTGGATTCAAAACAGAGGAACTGTATACAAAAAGAATGGACAAATCCATGTTCTGTTTAGATGGATGTTTAGAGTGACGAGTTGCTAATATTATCAGTGGCTCATTTCACTCTGTTGGAGAGATTTGATATGAGAATGGATGGAATAGCAGCCTATTTGGTGGCACTTTCCTTTATAGAGGCCCACTGTGGGACCACTGTGGGACCATTAAATGAACATATTCTTTGATCTACAGCTATTCAAATATATACTGTCAGTGCATTCAACACCCTTTGTTTCTTCACAATATGAAACACCCACAGATACATGGAAGTGGTGTGTACCATTTTCATACATTCATAAATTATACTTACCATTTCTTGCATTTATATAGATGTAATTAAGGCTCAATTCACATATTGAGCCATACAACATTTTATTACACAATGGTTCAAAACAAAACATCTCTTGGAAGTTGCAGAGAACTATAGGAAATAAAAATGTGTATTTGGTACTTTGCATTTGCAATAGATTTTTGGTAAAAGCCATAAACTCAGGTTGTTATTTATAATGTAGCCTATTTTATACTCTATTGATATGTTAATAGAACTTCAATGTGAGAACTTAAAAAATCTAATTGTGACACTTTGGTGCCTGAGAAACACATATTTTATAGTTAGTCTTTTGTGTGAATAataaagtttttatttttattaattataTTTACACCAATTGAAATGATGTAATatttacacacacatgcacacacacagatgtaaatAACCCCTTGAGATAACATTAAAATCTTGTTTCCATAGACTTCTTTATACAAATTATCCAATGAAACGGTTGTAAGGACaaaatggaatggaataaattATATATTAACAGTCCAGACCAATAAATATATAGGCGCTTAGAGCTTTATCTCTATTGAGATAGAATCacgttatatattttttttaattatcacTTTGGTACTactttcacaagtatgtggtgaaTATTTGAAACTTTAGCACAAAAACACTTGCAACACAGCCAATCTTACATTCAAAACCTTTCATAGTGCATTAATTTGGTTTGTAAACATCTGTCACCACACAACCATATATCCAAAATATACGTTTACTGTGAAATAAAATTAGTACATTGGTTTAATcacaaaaacacaacataatgaTATATTCTCAATTGAGTTATTTATTTTAACAACCATTTAACCCAATACCAAAACATGTAAGATACATGATTCAAAATTGTCCTTTGAATGTagtatgctacagtactgtaaattacagtacattacactgttTTACATTAGGCTATACACTTGCACTACCCATGAAAATTGACTggatatcacatttccataattTCTATCCCTTGTGTGATCAAAAGTGTGATCATTGAAGACATCTTTCACAATGTAATCAAATGCAAGAAATGAAAGAAACAATCTTTAGCAGACACTAGTTTGCATCAAGCCTGTCTTGAGCATTTGGCCATAGGTTTTGATCGAAATGGCAGTAAATATCCTCATTATTCATGTACCTTGGGAAAAACCTTTCGGTCTAAATTGGTCTGGATTGGAATCATTGCATGCCTCCTCTATAGCCAGATGGAGGGTGGTACACTCATGGGGATGGCAATTATACGTCTTCCATCTGTATTGTAGTCATGTATTGTAATTTGCAGTACTGTACTTATGTGTTTGCAGAAGTCCTGTATGTGGCTCAGTTTATTAAAGCATGGTACTAG
>TU2562200
GCCACAGTGCAGTGCAGTCTCGCCGAGGGACTTTGGATGGGCTCTGAGGAGTTCGATGCTCCACAATAGGCCTATTGTTTTGGTTTTATTTTGGGAGTTTATGTTTTCTTTTCAAACTTCTATTTCAACTTACTGCGCATTTCTTACAAGTCTCCACACTTTCTGGAGGTTTTTATTAGGAGAGTGAAGGAGGGCGGTGCAGGATGAATGGAACTACTTCTGAGAAGGCGGCATCGAGCCTGTCGTCTGATCTCCACGCCACAGTGAGCTGTCCAATGATTTCCCGACGCTGCCAAAGTCTTCTCCCATGGACATGGGGTTCTACAGCGGCCAGACGATGCACAGCCACCACGGCTACTACCCCAGCCACGGCCAGTCCTACTCGCAACCAATGAAACCATCCTCGTATCATCACCATTACAATCTCCATGGGATTGGGGTATCGGGGGCCTACATTGCAAAATCGGAATACCCTTATCCCCATAAGCAATACGCTCATTATACCCGAGACATACAGTCACATCTCCAAGATATCGGTCAAGATCTGGTTCCAGAATCGGCGTTCCAAATTCAAGAAGCTGTACACATACGGGGAAGTTCCACTGGACCACAGCCCAGGAGCCAGTGACTCTATGTCCTGCAATTCACCCCCGTCCCTGGCCATTTGGGACAGTAGTATACCCACAGACCCTGCAACTAGAGAGCAGGCTCCCCAGCCCTCCCTCAGCTCCTCTCTATGTTATGTGGAGGACTACACTCATCACTGGTATCAACAGACCTCACAGTCACGTTCACAGCACTCAGGACTGGTTCTTCAGCACACAACACTACCAAAGAATATGGGGGCGGTGTACTAATACAAAACGTATCGGAACAAGCTGTGGTCCAACAACATGGCCATTTATTGGAAATAAAGCCTAGAGGGTGTGTGCCAAAACAGAGGGCTGAAGTTCACAGACAAGTTGGGAAACATGCACAAGGACTTATTGTCTCTGTTGTTCCTTTTGGATTCAAAACAGAGGAACTGTATACAAAAAGAATGGACAAATCCATGTTCTGTTTAGATGGATGTTTAGAGTGACGAGTTGCTAATATTATCAGTGGCTCATTTCACTCTGTTGGAGAGATTTGATATGAGAATGGATGGAATAGCAGCCTATTTGGTGGCACTTTCCTTTATAGAGGCCCACTGTGGGACCACTGTGGGACCATTAAATGAACATATTCTTTGATCTACAGCTATTCAAATATATACTGTCAGTGCATTCAACACCCTTTGTTTCTTCACAATATGAAACACCCACAGATACATGGAAGTGGTGTGTACCATTTTCATACATTCATAAATTATACTTACCATTTCTTGCATTTATATAGATGTAATTAAGGCTCAATTCACATATTGAGCCATACAACATTTTATTACACAATGGTTCAAAACAAAACATCTCTTGGAAGTTGCAGAGAACTATAGGAAATAAAAATGTGTATTTGGTACTTTGCATTTGCAATAGATTTTTGGTAAAAGCCATAAACTCAGGTTGTTATTTATAATGTAGCCTATTTTATACTCTATTGATATGTTAATAGAACTTCAATGTGAGAACTTAAAAAATCTAATTGTGACACTTTGGTGCCTGAGAAACACATATTTTATAGTTAGTCTTTTGTGTGAATAataaagtttttatttttattaattataTTTACACCAATTGAAATGATGTAATatttacacacacatgcacacacacagatgtaaatAACCCCTTGAGATAACATTAAAATCTTGTTTCCATAGACTTCTTTATACAAATTATCCAATGAAACGGTTGTAAGGACaaaatggaatggaataaattATATATTAACAGTCCAGACCAATAAATATATAGGCGCTTAGAGCTTTATCTCTATTGAGATAGAATCacgttatatattttttttaattatcacTTTGGTACTactttcacaagtatgtggtgaaTATTTGAAACTTTAGCACAAAAACACTTGCAACACAGCCAATCTTACATTCAAAACCTTTCATAGTGCATTAATTTGGTTTGTAAACATCTGTCACCACACAACCATATATCCAAAATATACGTTTACTGTGAAATAAAATTAGTACATTGGTTTAATcacaaaaacacaacataatgaTATATTCTCAATTGAGTTATTTATTTTAACAACCATTTAACCCAATACCAAAACATGTAAGATACATGATTCAAAATTGTCCTTTGAATGTagtatgctacagtactgtaaattacagtacattacactgttTTACATTAGGCTATACACTTGCACTACCCATGAAAATTGACTggatatcacatttccataattTCTATCCCTTGTGTGATCAAAAGTGTGATCATTGAAGACATCTTTCACAATGTAATCAAATGCAAGAAATGAAAGAAACAATCTTTAGCAGACACTAGTTTGCATCAAGCCTGTCTTGAGCATTTGGCCATAGGTTTTGATCGAAATGGCAGTAAATATCCTCATTATTCATGTACCTTGGGAAAAACCTTTCGGTCTAAATTGGTCTGGATTGGAATCATTGCATGCCTCCTCTATAGCCAGATGGAGGGTGGTACACTCATGGGGATGGCAATTATACGTCTTCCATCTGTATTGTAGTCATGTATTGTAATTTGCAGTACTGTACTTATGTGTTTGCAGAAGTCCTGTATGTGGCTCAGTTTATTAAAGCATGGTACTAGCAACACCAG

Function

NR:

description
PREDICTED: homeobox protein Dlx3b-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521929 False 2982 mRNA 0.40 3 45875280 45885821
TU2562200 True 2753 TUCP 0.39 2 45875271 45885768

Neighbor

gene id symbol gene type direction distance location
LOC110520959 LOC106583889 coding downstream 130714 45741532 ~ 45744566 (-)
LOC110521927 LOC106583888 coding downstream 152663 45635844 ~ 45722617 (-)
LOC110521018 NA coding downstream 247651 45614175 ~ 45627629 (-)
LOC110521926 vatl coding downstream 262651 45603162 ~ 45612629 (-)
LOC110521925 LOC106583885 coding downstream 274184 45580483 ~ 45601096 (-)
LOC110521930 LOC100706559 coding upstream 4348 45889952 ~ 45913692 (-)
LOC110521933 LOC106583869 coding upstream 218646 46104467 ~ 46114578 (-)
LOC110521934 LOC100136580 coding upstream 230804 46116625 ~ 46119668 (-)
LOC110520962 LOC106600948 coding upstream 361993 46247814 ~ 46263183 (-)
G2241244 NA non-coding downstream 5513 45869501 ~ 45869767 (-)
G2241243 NA non-coding downstream 6173 45868887 ~ 45869107 (-)
G2241151 NA non-coding downstream 86479 45788599 ~ 45788801 (-)
G2241144 NA non-coding downstream 90863 45784117 ~ 45784417 (-)
G2241089 NA non-coding downstream 103030 45709873 ~ 45772250 (-)
G2241295 NA non-coding upstream 34239 45920060 ~ 45925164 (-)
G2241356 LOC106583880 non-coding upstream 74089 45959910 ~ 45960613 (-)
G2241370 NA non-coding upstream 91477 45977298 ~ 45977976 (-)
G2241573 NA non-coding upstream 115931 46001752 ~ 46063071 (-)
LOC110521015 LOC106583894 other downstream 904814 44950503 ~ 45003269 (-)
G2240022 aldoa other downstream 1141970 44721963 ~ 44733310 (-)
G2239635 LOC106583937 other downstream 1591912 44282136 ~ 44283368 (-)
G2237814 NA other downstream 3131688 42742894 ~ 42743592 (-)
G2237502 NA other downstream 3593918 42280756 ~ 42281362 (-)
G2241718 NA other upstream 406089 46291910 ~ 46301730 (-)

Expression


Co-expression Network