LOC110520962 (LOC106600948)


Basic Information

Item Value
gene id LOC110520962
gene name LOC106600948
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 46247814 ~ 46263183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969038.1
gacgGGGAGAGGAGGTGGTGACCAGCATAACAATTCTCGCAACACCGAGGCCAGAATTCATCATTTTTAACAAAAGGAAGAAGTTTGGTTTAAATTGGGGATTTCAATCGGCTGAGCTGTGATGCAATTGGCCTGTGTGCAAGCGCGGCCCCGTCGGGcggctgaggagagagaagagccGCCCCCAGGCCCCGCCCCTCCCTCCACTCATCACTCTGACCACCAGTTCAAGAATATGAAGAGCAAGTTCTTCAACGAACTCACCCACATGCCAATGCCCATGTGGGCAATAGGAGCCATAGTGGTGGTCGTGCTGGCTCTTGTGGCCTGTCTAGGTTTCTGTATCTGGAAGAAGTGCATCAACAAGGGCAAGAAGCCCAAGAAAGCACGCGAGAGGAAAGGAGGCCGAGGCagaagaaagaaggagggagccggagaaggagaggaggAAggtaaggaaggagaggaggaggaaaaagagaATTTCGGAAAACTGGAGTTCACCCTGGACTACAACTTCACTGacaaccagCTGATTGTGGGTATCCTGCAGGCGGAAAACCTGCCAGCCATGGACATGGGCGGCACCTCAGACCCCTATGTCAAGGTCTACATGCTGCCAGACAAGAAGAAGAAGTTTGAGACCAAAGTCCAGCGCAAGAATCTCTGCCCAGTGTTCAATGAAACCTTCATCTTCAAGATCCCCTACCAGGAGCTGGGCGGTCAGACTCTGGTCCTACAGGTCTTTGACTTTGATCGCTTTGGTAAACACGACGTGATTGGACAGATCTCCATCCCCATGAACAGTGTGGACCTGGCTCAGCCACTCCACGAATGGAGGGATCTGgttggaggagagaaagaggagGTAGAGAAGCTAGGGGACATCTGCATCTCTCTGCGCTACGTCCCCACAGCCGGTAAATTGACCATCAACATCATGGAGGCCAAGCACCTGAAGGCGATGGACTGCGGAGGCTTGTCAGATCCCTTCGTTAAAGTGGTGCTGCAGCACCAAGGCAAGCggctgaagaagaagaagacaacagtCAAACAGAACACTCTGAACCCCTACTTCAATGAAAGCTTCAGCTTCGAGATTCCATTTGGCCAAATACAGAAAGTCCAAGTGTTGATCACGGTGTACGATTACGACAAGCTGGGCAGCAACGACGCCATCGGGAAGGTTTGGATCGGCTTCGGTGCCTCAGGGGTGGGCCTTCGCCATTGGTCAGACATGCTGGCCAATCCAAGACGTCCCGTAGCCCAGTGGCACGCCCTGTGTCCTGAGGAGGAGGTGGACGAGGCCCTGAAGAAACCCATCCGCTAAACGTACACTGACACGTCACTGAACATTCTTGTACATGTTAAAACAAACAACATAAGACACAACAACCCACCTGACATTTCTGATAATTTTTTCTGGTACTCTCTCCTTCCTTATTATTCTCCATAGAACATCAAAATAATACTTATTTTGCATATGAACTAATTGTACTGTTTGTTTTTACTTTTGTGTCCCTTTTGACCATTTTGATGTTAAGTTATGAGTAGGCTGACTGTTTTGTGCTTTTGTGTATGAATGTGTGCACATGTGTCGTGCGCGTGTGTTCGTATTAAACCATAGTTCATGAAAGCTTTCTCTTATTTATCTCCTGAATGTAATGTGAGCGGTTGTAAATGACTAAATAAATAATTCCC

Function

NR:

description
synaptotagmin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969038.1 True 1701 mRNA 0.49 9 46247814 46263183

Neighbor

gene id symbol gene type direction distance location
LOC110521934 LOC100136580 coding downstream 128146 46116625 ~ 46119668 (-)
LOC110521933 LOC106583869 coding downstream 133236 46104467 ~ 46114578 (-)
LOC110521930 LOC100706559 coding downstream 334122 45889952 ~ 45913692 (-)
LOC110521929 LOC106583891 coding downstream 361993 45875271 ~ 45885821 (-)
LOC110520959 LOC106583889 coding downstream 503248 45741532 ~ 45744566 (-)
G2241666 NA non-coding downstream 91478 46155924 ~ 46156336 (-)
G2241665 NA non-coding downstream 92373 46155166 ~ 46155441 (-)
G2241663 NA non-coding downstream 95293 46152291 ~ 46152521 (-)
G2241662 NA non-coding downstream 96399 46151081 ~ 46151415 (-)
G2241660 NA non-coding downstream 97319 46150263 ~ 46150495 (-)
G2241758 NA non-coding upstream 25078 46288261 ~ 46295253 (-)
LOC110521015 LOC106583894 other downstream 1277348 44950503 ~ 45003269 (-)
G2240022 aldoa other downstream 1514504 44721963 ~ 44733310 (-)
G2239635 LOC106583937 other downstream 1964446 44282136 ~ 44283368 (-)
G2237814 NA other downstream 3504222 42742894 ~ 42743592 (-)
G2241718 NA other upstream 28727 46291910 ~ 46301730 (-)

Expression


Co-expression Network