G2190515 (fbxl22)


Basic Information

Item Value
gene id G2190515
gene name fbxl22
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 854304 ~ 864263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2505395
tcgacctctcccctttccccttcaCAGAGAACATGTTGGAAACTCTGCACTACAGTCCATATCCACAGAGTCCAGTAAAGTGACTAACTTAATGTGTTCAAAAGGGAATTGGTCCAACATAGCCTGCACTGCACTGTTGTTTTCTGGGAATGAAACGTGAGGCGTTACATGTGAATGACAGTTTATATAACATTGAGAGAGACAGGCTTACATTCAGTTAGGGACCTCAACTGTGTCATCCACAGTTAGTGTTTAATAAAACAAACATTAAAACAAATCATTAAATCTCAGTATAAAACCCAACCACACAAAAAGTATAAAACACCTCAAATAAAAATCGGTATAAAGtcaaaacaattataataattgGCCCTTTTAATTCAGAACCGAAACTATTTTTGCTCATATCAATAAGACTGAAGTCCAAAACAGGTCAACAGTGACCCTCCCATTCACCTTTAGGCATTTCAACACTGCCTCCTAGTGGTGAAACTATGGACTGTGTCCCAAATATTCCCTACATTACTATTTACCAGAGCTCAATGGGCCCTtgttaaatgtagtgcactatatagggaatagggtgctatttgagaagAAGATGTCTGTGGTTAAGTCTATGGTCCTCAGGAGAACTGAATAACCTTCAGCAGTCCATAATGGGTTCTGGTCATTAGGATAACTGAAGAACCTTCAGCAGTCCATATTGGGTTCTGGTCATTAGGATAACTGAAGAACCTTCAGCAGTCCATATTGGGTTCTGGTCATCAGGAGAACTGAAGAACCTTCAGCAGTCCATattgggttctggtctaaagcagtgcactatataaggaataaggtaccatttgggacacaaccatggCCTCTCATCATGACAACTGCAGGACCTTCTTCAGCAGTAGGtttgtctcccaaatggcactctattccaaaatagctccctattccccatgtagtgcactccttttaaccagggcccatagagacaCAGCTGTAGCCTCATCAGGAGAACTGTAGTGATGTCATCAGGAGAACATTAGGAGAACTTCTGCATAAGTCTCCGTCCGAGTGGTAGCTGCTTCCTCTTGTCAGGTTTACTATCAGGTATCATCCCTGCGCTCCTCTCAGCGGTCAGCCTAATGTCCGGCCGTCTTTCCCGGATCATCTGCAGCCCTGCCCGAGTAATGTTACGGCAAAAGTCCACTGTGACCTGGTGGAGGCCGGCCCCGTGGAGCACCAGGGCCTGCAGGGTCAGGTCTGTGACCCGGACACAGTTCTCCAGATGGAGGGAGCGGAGGCGGCTGCAGCTCTGCAGAACACAGATCACTTCCTGGTCTGAGATATGCCCGCAGCcagacagggtcagggacagcaGGTTAGGACACCTGGAGAAAGGAAGAATCATGTATATTTGACGTTGTAGTAATTTAGCAGGCGTTCTTAAAGAGAGACTTAGTTAATgaattcatcttaagatagctaggtgaaacaaccacatctacagtaacagtcaaagacctggagggaggaaga
>TU2505396
CGTGAGGCGTTACATGTGAATGACTCAATCAGTTTATATAACATTGAGAGAGACAGGCTTACATTCAGTTAGGGACCTCAACTGTGTCATCCACAGTTAGTGTTTAATAAAACAAACATTAAAACAAATCATTAAATCTCAGTATAAAACCCAACCACACAAAAAGTATAAAACACCTCAAATAAAAATCGGTATAAAGtcaaaacaattataataattgGCCCTTTTAATTCAGAACCAAAACTATTTTTGCTCCTATCAATAAGACTGAAGTCCAAAACAGGTCAACAGTGACCCTCCCATTCACCTTTAGGCATTTCAACACTGCCTCCTAGTGGTGAAACTATGGACTGTGTCCCAAATATTCCCTACATTACTATTTACCAGAGCTCAATGGGCCcttgtcaaatgtagtgcactatatagggaatagggtgccatttgagaagcaACTGTCtgtggtgagaggttagcatgtcttaggggtatgatataaaatgctaacctcccctgttattgtaatggtgagaggttactatgtcttgggggtacgatataaaatgctaacctcccctgttattgtaatggtgagaggttagcatgtcttgggggtacgatataaaatgctaacctcccctgttattggtaatggtgagaggttagcatgtcttgggggtacgatataaaatgctaacctcccctgttattggtaatggtgagaggttactatgtcttggaggtatgatatataatgctaacctccactgttattgtaatggtgagaggttagcatgtcttggaggtatgatatataatgctaacctcccctgttattgtaatggtgagaggttagcatgtcttgggggtacgatataaaatgctaaccactccctgttattggtaatggtgagaggttagcatgtcttaggG

Function

symbol description
fbxl22 Acts upstream of or within SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and regulation of cardiac muscle cell contraction. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL22 (F-box and leucine rich repeat protein 22).

NR:

description
PREDICTED: uncharacterized protein LOC106565965 isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2505395 False 1536 lncRNA 0.45 2 854304 855886
TU2505396 True 930 lncRNA 0.39 2 863271 864263

Neighbor

gene id symbol gene type direction distance location
dapk2b dapk2 coding upstream 18860 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 71823 694938 ~ 782481 (+)
LOC110521136 NA coding upstream 244037 608566 ~ 616624 (+)
bnip2 bnip2 coding upstream 297096 485872 ~ 557208 (+)
cfap161 LOC106584861 coding upstream 470047 363443 ~ 384257 (+)
ca12 LOC106584842 coding downstream 144486 1008749 ~ 1028587 (+)
man2c1 man2c1 coding downstream 211691 1075954 ~ 1136244 (+)
sema7a LOC106584837 coding downstream 303728 1167991 ~ 1240748 (+)
islr2 LOC106584836 coding downstream 415570 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 861135 1725398 ~ 1755496 (+)
G2190508 NA non-coding upstream 11786 842114 ~ 842518 (+)
G2190481 NA non-coding upstream 13193 799286 ~ 841111 (+)
G2190484 NA non-coding upstream 57035 796658 ~ 797269 (+)
G2190480 NA non-coding upstream 65328 788427 ~ 788976 (+)
G2190479 NA non-coding upstream 66338 787517 ~ 787966 (+)
G2190524 NA non-coding downstream 9143 873406 ~ 874299 (+)
G2190529 NA non-coding downstream 18677 882940 ~ 884097 (+)
G2190530 NA non-coding downstream 21552 885815 ~ 886775 (+)
G2190560 NA non-coding downstream 75853 940116 ~ 940438 (+)
G2190561 NA non-coding downstream 76419 940682 ~ 941880 (+)
G2190199 NA other upstream 326838 523534 ~ 542502 (+)
G2190050 NA other upstream 491677 360931 ~ 362627 (+)
G2190881 NA other downstream 387403 1251666 ~ 1252951 (+)
G2191047 NA other downstream 817291 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1382801 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1895997 2760260 ~ 2762972 (+)

Expression


Co-expression Network