G2190560


Basic Information

Item Value
gene id G2190560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 940116 ~ 940438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2505459
atacaggactgaccatccatgatatcaacattatagttttaatcatgttatgaggctatacaggactgaccatccatgatatcaacattatagttataaccatgttatgaggctatacaggactgaccatccatgatatcaacattatagttataaccatgttatgaggctatacaggactgaccatccatgatatcaacattatagtttaaCTTTGTTTTGAGGATATACAGCGTTTGTTTACATTTTCTTTGttgacaaacattggagtaaaacaagcttatattttgggttctcatggagtgtgatcGTTGAAcgaagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2505459 True 323 lncRNA 0.34 1 940116 940438

Neighbor

gene id symbol gene type direction distance location
dapk2b dapk2 coding upstream 104672 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 157635 694938 ~ 782481 (+)
LOC110521136 NA coding upstream 329849 608566 ~ 616624 (+)
bnip2 bnip2 coding upstream 382908 485872 ~ 557208 (+)
cfap161 LOC106584861 coding upstream 555859 363443 ~ 384257 (+)
ca12 LOC106584842 coding downstream 68311 1008749 ~ 1028587 (+)
man2c1 man2c1 coding downstream 135516 1075954 ~ 1136244 (+)
sema7a LOC106584837 coding downstream 227553 1167991 ~ 1240748 (+)
islr2 LOC106584836 coding downstream 339395 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 784960 1725398 ~ 1755496 (+)
G2190530 NA non-coding upstream 53341 885815 ~ 886775 (+)
G2190529 NA non-coding upstream 56383 882940 ~ 884097 (+)
G2190524 NA non-coding upstream 65817 873406 ~ 874299 (+)
G2190515 fbxl22 non-coding upstream 75853 854304 ~ 864263 (+)
G2190508 NA non-coding upstream 97598 842114 ~ 842518 (+)
G2190561 NA non-coding downstream 244 940682 ~ 941880 (+)
G2190562 NA non-coding downstream 2330 942768 ~ 943028 (+)
G2190736 NA non-coding downstream 26523 966961 ~ 967686 (+)
G2190762 NA non-coding downstream 80715 1021153 ~ 1022024 (+)
G2190748 NA non-coding downstream 91221 1031659 ~ 1033412 (+)
G2190199 NA other upstream 412650 523534 ~ 542502 (+)
G2190050 NA other upstream 577489 360931 ~ 362627 (+)
G2190881 NA other downstream 311228 1251666 ~ 1252951 (+)
G2191047 NA other downstream 741116 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1306626 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1819822 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1952797 2892934 ~ 2915974 (+)

Expression


Co-expression Network