G2190748


Basic Information

Item Value
gene id G2190748
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1031659 ~ 1033412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2505699
ggtacagagtcaatgtggaagctatatacagggggtaccggtacagagtcattgtgaaGGGGTatcggttagtcgaggtaattgaggtaatatgtacatggaggTCGAGTTAAAGTAactttgcaacaaggcacttaagtaatacaGCTAAAAATGTGGCAAGGAAATTAACTTTTTGTACTGAATACAAagggttatgtttggggcaaatccagcacatcactgagtaccactcttcatctTTTCGagatggtggtggctgcatcatgttatgggtatgcttgtcatcagtaAGGACTAGAGCTTTTCTTAGGATAAAAATAAAGGGAATACagctataagcacaggcaaaatcctagagtaaaacctggttcagttcagctttccaatagacactgggagacaaatacacctttcagcaggacaacaacctacaAATCAAGGCAAAATCTACATTGtttgcttaccaagaaaacattgaatgttcctgagtgacctagttacagttttgatttataTCGGCTTGAAAATCAAGGCAAGACAAGacatggcaagacttgaaaatggctgtctagcaatgatcaacaaccaacttgacagagcttgaagaattttaaaaagaataatgtgcaaattttgtacaatcccactcttagagacttacccagaaagactcacagctcttagagacttacccagaaagactcacagctgtaatcactattagagacttacccagaaagactcacggctgtaatcactgctaaaggtgcttctacaaagtattgactcagtggtgtgagTACTTATATAAATTAGatttttctgtatttcattttcaatcaatTTTGAGGAAAAAAAATCGATATAATCCAttgtgaattcaggctgtaacacaacaacatgtggaataaatcaaggggtgtgaatactctctgaagacTCTGTATGTTGCCTtgtgcaaagttggtagaatGTTATTCCAAATGATTcccagctgtaatggctgccaatgCTTAAACCATGTATTAACTCTGAGTGTGAAGACATGCAATcaagacaaaaaaatatatatattttttattcgaAACATTTTTCTATAACTTTCTTTAACTTTGAAAATATGGAGAAGGTTGTGTAGATCTGTAGGGGGAAAAAATCTAATGTAATCCATTTTTAGCAAAATGTGAACATAAGAGAACCTAAAAgagttattcagctgtccccgtTGGATAACagaggttctacatggaactcaaataagttctacctggaaccaaaaaaacgGTTTTCCTAGGAGAcagtcgaagaacccttttggaaccctttttttctaagagtgttgaTAGCTAATCTCTGATACCAGACTTAGAGGCTAAACACAAGCAACAGAGTGGAATCTCAACACATTAAAAACCAGAGACATTTCCTGATGATTAGGGTTCtttgagtggcgcagcggtctaaggcactgcattgcagtgctagaggtgttcaatcctgggctgtatcacaactgttcatgatcaggagtcccattgggcggcgcacaattggtctggcgtcgtccaggtttggccgaggtaggttgtcattgtaaataagaatttgttcttaactgacttgcctcgttaaataaaggtgaaataaataca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2505699 True 1655 lncRNA 0.39 3 1031659 1033412

Neighbor

gene id symbol gene type direction distance location
ca12 LOC106584842 coding upstream 3072 1008749 ~ 1028587 (+)
dapk2b dapk2 coding upstream 196215 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 249178 694938 ~ 782481 (+)
LOC110521136 NA coding upstream 421392 608566 ~ 616624 (+)
bnip2 bnip2 coding upstream 474451 485872 ~ 557208 (+)
man2c1 man2c1 coding downstream 42542 1075954 ~ 1136244 (+)
sema7a LOC106584837 coding downstream 134579 1167991 ~ 1240748 (+)
islr2 LOC106584836 coding downstream 246421 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 691986 1725398 ~ 1755496 (+)
LOC118945762 NA coding downstream 714272 1747684 ~ 1749666 (+)
G2190762 NA non-coding upstream 9635 1021153 ~ 1022024 (+)
G2190736 NA non-coding upstream 63973 966961 ~ 967686 (+)
G2190562 NA non-coding upstream 88631 942768 ~ 943028 (+)
G2190561 NA non-coding upstream 89779 940682 ~ 941880 (+)
G2190560 NA non-coding upstream 91221 940116 ~ 940438 (+)
G2190790 NA non-coding downstream 11988 1045400 ~ 1045680 (+)
G2190794 NA non-coding downstream 14047 1047459 ~ 1047832 (+)
G2190799 NA non-coding downstream 17554 1050966 ~ 1051171 (+)
G2190800 NA non-coding downstream 28881 1062293 ~ 1067566 (+)
G2190803 NA non-coding downstream 35046 1068458 ~ 1068921 (+)
G2190529 NA other upstream 147562 882940 ~ 884097 (+)
G2190199 NA other upstream 504193 523534 ~ 542502 (+)
G2190050 NA other upstream 669032 360931 ~ 362627 (+)
G2190881 NA other downstream 218254 1251666 ~ 1252951 (+)
G2191047 NA other downstream 648142 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1213652 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1726848 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1859823 2892934 ~ 2915974 (+)

Expression


Co-expression Network