G2190875


Basic Information

Item Value
gene id G2190875
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1227610 ~ 1228239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2505844
aactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcgactagcctacctggttaaataaaggtgaagtacaaataataatgaataaaaaaGAGCCTTTTACAGTAACCGGCCTAGAGCCCAACGAGCCTTTTACAGTAACTGACCTAGACCCCAAAGAGCCTTTTACAGTAACCGGCCTAGACCCCAACGTGCCTTTAACAGTAACTGGCCTAGACTCCAAAGAGCCTTTTACAGTAACCAGCCTAGACCCCAAAAGAGCCTTTTACAGTAACTGGCCTAGACCCCAAAAATAGTTTTACAGCAATCGGCCTACACCCTAAAGAGCCTTTTACAGTAACCGGCCTACA

Function

NR:

description
plakophilin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2505844 True 366 lncRNA 0.44 2 1227610 1228239

Neighbor

gene id symbol gene type direction distance location
man2c1 man2c1 coding upstream 91366 1075954 ~ 1136244 (+)
ca12 LOC106584842 coding upstream 199023 1008749 ~ 1028587 (+)
dapk2b dapk2 coding upstream 392166 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 445129 694938 ~ 782481 (+)
LOC110521136 NA coding upstream 617343 608566 ~ 616624 (+)
islr2 LOC106584836 coding downstream 51594 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 497159 1725398 ~ 1755496 (+)
LOC118945762 NA coding downstream 519445 1747684 ~ 1749666 (+)
hacd3 hacd3 coding downstream 561357 1789596 ~ 1841114 (+)
LOC118945831 LOC106591986 coding downstream 750996 1979235 ~ 2008439 (+)
G2190853 NA non-coding upstream 36427 1190184 ~ 1191183 (+)
G2190848 NA non-coding upstream 41958 1184381 ~ 1185652 (+)
G2190847 NA non-coding upstream 42262 1183626 ~ 1185348 (+)
G2190813 NA non-coding upstream 60739 1165738 ~ 1166871 (+)
G2190814 NA non-coding upstream 72375 1154754 ~ 1155235 (+)
G2190876 NA non-coding downstream 459 1228698 ~ 1233550 (+)
G2190807 NA non-coding downstream 15768 1244007 ~ 1245822 (+)
G2190888 LOC106584835 non-coding downstream 57169 1285408 ~ 1288020 (+)
G2190894 NA non-coding downstream 77595 1305834 ~ 1314502 (+)
G2190900 NA non-coding downstream 87306 1315545 ~ 1318812 (+)
G2190529 NA other upstream 343513 882940 ~ 884097 (+)
G2190199 NA other upstream 700144 523534 ~ 542502 (+)
G2190050 NA other upstream 864983 360931 ~ 362627 (+)
G2190881 NA other downstream 23427 1251666 ~ 1252951 (+)
G2191047 NA other downstream 453315 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1018825 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1532021 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1664996 2892934 ~ 2915974 (+)

Expression


Co-expression Network