G2190807


Basic Information

Item Value
gene id G2190807
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1244007 ~ 1245822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2505771
cttttcctccctgTATCATTGAGTTATGAGGCTGAACACACTCCCAGAAgggtgcacacacatacacatagacacacaaccACCCAAGTGCTGGGGGTAAATCATGTTTTTGGCACCACAAGGATGGAGTAGGACTGAATAAGGACACGTGGATctgtatcagtggaggctcctcagaggaggacagGGGAAGACCATCCTCCTCAGGCACCAGACAGATTTGATTAGACTAGTGAGCAAcagcatttttttatttatttaaaaaatatttatttcacctttatttaacaagttctcatttacaactgtgaccttgCCGAGATATAGCAAatcagtgcaacacaaacaacacagagttacgcatggaataaacaaatgtacagtcaataacacaatagaaaagtctatatacaatgtgtgcaaatatagtaagattagggaggtaaggcaataaataggccatagtgacgaaataattacaatttagcaattaaatactggagtgatagatgtgcagaagatgaatgtgcaagtagagatactggggtgcaaaggagcaaaataaaaataagctgccctgacagctggtgcttaagtgagttagtgagggagatatgagtctccagcttcagtgatttttgcaatttgttccagtcattggcagcagagaactggaaggaaaggcagccaaagaggagttggctttggggatgaccagtgagatatacctgctggagcgtgtgcctacgtgtgggtgttgctatggtgaccagtgagctgagatgaggtggggctttaccttgcaaagacttatagatgacctggagccagtgggtttggcgacgaatatgaagcgaggaccagccaacgagagcaggtcgcagtggtgggtggtatatggggctttggtgacaaaacagatggcactgtgatagactgcatccagtttgttgagtagagtgttggaggctattttgtaaatgacattgccgaagtcgaggatcggttcgatagtccgttttacgagggtatgtttggcagcatgagtgaaggatgctttgatgCAAAATAGGAAGCTAATTCTAggtttcattttggattggagatgcttaatgtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttagcCTGTCATTATATCAAACAGTATattgtttgttttatttatttataggggacaatgcacattaatcaacatctATATTACGATAATGTAACATCCATGTAAATGTGCCGGGGTTAGCCAATAGCTAATTAGCACCAGGACAGGTAAGGACAATTACACAGTCACAATACAAATACTCACTAAATCAATACAAAATACCAATACATTACAtccaataatatataatataccatTCTAATCACAACAACCACACCACCATCAACTGTCGTCATATGAAGAAGCCCAGAACTCGTGTACAGGTGTGGATAGATTTTAGCCATGTTTACAATAATCCGTGCAGCTTCTCAATTCCATGGGAATTGCATTCCAGCATATTGTAGCTCTAACAGATTGGCCGATTTTTTTCTGTGTTGAAAAGGGACAACGTTTTCCCCTCTAGTTACTGCCCTTGTTCTCCGAGAGGTGCTTTCATTGAGCATGATATGCCGACATAGGGGTGGAGACCATGCAGGATCTTAAAGACAAGGCTTGCATCTACATACTGCTTAAAGCTATCCAGACTAAATAAATTATGTTTGTAAATGACAATGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2505771 True 1761 lncRNA 0.41 2 1244007 1245822

Neighbor

gene id symbol gene type direction distance location
sema7a LOC106584837 coding upstream 3259 1167991 ~ 1240748 (+)
man2c1 man2c1 coding upstream 107763 1075954 ~ 1136244 (+)
ca12 LOC106584842 coding upstream 215420 1008749 ~ 1028587 (+)
dapk2b dapk2 coding upstream 408563 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 461526 694938 ~ 782481 (+)
islr2 LOC106584836 coding downstream 34011 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 479576 1725398 ~ 1755496 (+)
LOC118945762 NA coding downstream 501862 1747684 ~ 1749666 (+)
hacd3 hacd3 coding downstream 543774 1789596 ~ 1841114 (+)
LOC118945831 LOC106591986 coding downstream 733413 1979235 ~ 2008439 (+)
G2190876 NA non-coding upstream 10457 1228698 ~ 1233550 (+)
G2190875 NA non-coding upstream 15768 1227610 ~ 1228239 (+)
G2190853 NA non-coding upstream 52824 1190184 ~ 1191183 (+)
G2190848 NA non-coding upstream 58355 1184381 ~ 1185652 (+)
G2190847 NA non-coding upstream 58659 1183626 ~ 1185348 (+)
G2190888 LOC106584835 non-coding downstream 39586 1285408 ~ 1288020 (+)
G2190894 NA non-coding downstream 60012 1305834 ~ 1314502 (+)
G2190900 NA non-coding downstream 69723 1315545 ~ 1318812 (+)
G2190914 NA non-coding downstream 106085 1351907 ~ 1353311 (+)
G2190938 NA non-coding downstream 160410 1406232 ~ 1408487 (+)
G2190529 NA other upstream 359910 882940 ~ 884097 (+)
LOC110521136 NA other upstream 627383 608566 ~ 616624 (+)
G2190199 NA other upstream 716541 523534 ~ 542502 (+)
G2190050 NA other upstream 881380 360931 ~ 362627 (+)
G2190881 NA other downstream 5844 1251666 ~ 1252951 (+)
G2191047 NA other downstream 435732 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1001242 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1514438 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1647413 2892934 ~ 2915974 (+)

Expression


Co-expression Network