G2190888 (LOC106584835)


Basic Information

Item Value
gene id G2190888
gene name LOC106584835
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1285408 ~ 1288020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2505861
ACTTGAGTCACTGTCACTTTTGAAATGCAATATGGCTGCAACACACAGCGAGAATTAAGTAGACGATCCTGaacagcaacattttcacaaCTATAAATTGAGAAAAATAACAATCCCAAAAATAACGATCCAAAACAATATCAGCGGAATTATAGTAGAGTTATTTTATAAAAGGTACAAGGTGACCTACAGCAAAGAGTTCAAGCAAACAGTTTCATCTGTCTACGTTTTAATCGCCATTTCACACATTTTCAACATAGATATTATTTATTAGCCTGGAATCAGAACAGAATTGTACCGTTTTGGAACAATTCAGTTTGGCTTCCAGGGTACCATAGATATTTACACCAGTCAGTGTTAATTAATGAACCGTTTCTTTATAACCTTCCATTACAGAGGAGTCTGTATATTAATAAATAGTTACATTCTaaccacatacacatggtcaaaCTAGCCTGGATTCCAAGAGGACATGTTCTGTTTCCATTGGTGAAATGGAGTGTATCAGTTAGGCTTCCAGGCTATGGTCAGACAGGAGTTCAGTGCCACACGACCTTTCCCGCTAGACTAGAGATTCTGTACGGCCATCAGAGCCATGCAAACAAAGAGACagacaacaaaacacacatccatccaggTCGATCCCACGATGTAGCACACCCTTGGACCAGGGCtgataagtagtgcactatataggaactaAGGTGCCATTTAGACAGGTAGCCACTCAGAAGACAGACTTCCTGAGGCATTTGAGCTAGAAGGTCTATGACATTTAGATCTAATCCTTCCAttttcaaaaaaataataattcagaaataattgattgattgagtCAATGGGAAACTTGCATGAAAAAAAGAGGCAAGCAGTCAGATCAATGCATAGACATATAATACTACAGTTAtaatctgcCCAAGAGCCATCCATACACCAAGGCCATTCCAATTCAGTCAAatgaaattccaattccaattttCCCTCATTGAAAAGCAATAAGGAAATGTGTATTCTAAAAGATGCAGTATGAGCTCTGCCATTTCCTTGTTACTAAAAGGGACAAAACATGGTATCAgaccccagttagactagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacaagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcaGACCCCAGTTAGACGAGCTGTCTCCATGGCATCAGACCCCagtagactagctgtctccatggtatcagaccccagttagactagttgtctccatggtatcagaccccagttaaactagctgtctccatggtgtcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTAGACTGGCTGTCTCAATGGTATCAGACCCCAGTTAGACTAGTTATCTCCATGGTATCAgaccccagttagactagctgtctccatggtatcagaccccagtaagactagctgtctccatggtatcagaccccagttagactagctgtctccatctgcgtcggctaatggggatcataATAAATCTaaaccatctaaaccactgtgaaatatctttAAGAAGCAAAAATCTTGTTTGaggctggtgtacaaaaccaaaacttaagaacgggaagcatagaaataccaCACAGAACAGAGCTACCACTTCTTAGACGGGCTTTCAATGCGAATGACAGATCTATGaaattctatgtgaatttggtcaggtcacccaaaTAGTTACATAATGCAGCTTTAAATTTCAGTTTGCTTCCTGAATtggaatggaattgaccccaagccTGAGGGACACATTCTCAGTTAGTCACTGCCTCCGTTTCCTTCCCTGCCTCCATGTTTCCTGCCTCCTTGTTTCCTGCCTCCTTCTTCATCCCCTCTTTTGCAGCCCAGTTGAGTGTTCCGTTGAAGAAGCTCTCGTTGCTCTGACGCTGGAAGTGCTTCCTGGAGCCCACCAGCGAGGGGTTGTTGACCAGGGTGTAGAGGAGCTGCCAGTGGCCCCGTGCCCGTTTAGAGATGGACACCTTAT
>TU2505864
ACTTGAGTCACTGTCACTTTTGAAATGCAATATGGCTGCAACACACAGCGAGAATTAAGTAGACGATCCTGaacagcaacattttcacaaCTATAAATTGAGAAAAATAACAATCCCAAAAATAACGATCCAAAACAATATCAGCGGAATTATAGTAGAGTTATTTTATAAAAGGTACAAGGTGACCTACAGCAAAGAGTTCAAGCAAACAGTTTCATCTGTCTACGTTTTAATCGCCATTTCACACATTTTCAACATAGATATTATTTATTAGCCTGGAATCAGAACAGAATTGTACCGTTTTGGAACAATTCAGTTTGGCTTCCAGGGTACCATAGATATTTACACCAGTCAGTGTTAATTAATGAACCGTTTCTTTATAACCTTCCATTACAGAGGAGTCTGTATATTAATAAATAGTTACATTCTaaccacatacacatggtcaaaCTAGCCTGGATTCCAAGAGGACATGTTCTGTTTCCATTGGTGAAATGGAGTGTATCAGTTAGGCTTCCAGGCTATGGTCAGACAGGAGTTCAGTGCCACACGACCTTTCCCGCTAGACTAGAGATTCTGTACGGCCATCAGAGCCATGCAAACAAAGAGACagacaacaaaacacacatccatccaggTCGATCCCACGATGTAGCACACCCTTGGACCAGGGCtgataagtagtgcactatataggaactaAGGTGCCATTTAGACAGGTAGCCACTCAGAAGACAGACTTCCTGAGGCATTTGAGCTAGAAGGTCTATGACATTTAGATCTAATCCTTCCAttttcaaaaaaataataattcagaaataattgattgattgagtCAATGGGAAACTTGCATGAAAAAAAGAGGCAAGCAGTCAGATCAATGCATAGACATATAATACTACAGTTAtaatctgcCCAAGAGCCATCCATACACCAAGGCCATTCCAATTCAGTCAAatgaaattccaattccaattttCCCTCATTGAAAAGCAATAAGGAAATGTGTATTCTAAAAGATGCAGTATGAGCTCTGCCATTTCCTTGTTACTAAAAGGGACAAAACATGGTATCAgaccccagttagactagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacaagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcaGACCCCAGTTAGACGAGCTGTCTCCATGGCATCAGACCCCagtagactagctgtctccatggtatcagaccccagttagactagttgtctccatggtatcagaccccagttaaactagctgtctccatggtgtcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTAGACTGGCTGTCTCAATGGTATCAGACCCCAGTTAGACTAGTTATCTCCATGGTATCAgaccccagttagactagctgtctccatggtatcagaccccagtaagactagctgtctccatggtatcagaccccagttagactagctgtctacatggtatcagaccccagttagactagctgtctccatctgcgtcggctaatggggatcataATAAATCTaaaccatctaaaccactgtgaaatatctttAAGAAGCAAAAATCTTGTTTGaggctggtgtacaaaaccaaaacttaagaacgggaagcatagaaataccaCACAGAACAGAGCTACCACTTCTTAGACGGGCTTTCAATGCGAATGACAGATCTATGaaattctatgtgaatttggtcaggtcacccaaaTAGTTACATAATGCAGCTTTAAATTTCAGTTTGCTTCCTGAATtggaatggaattgaccccaagccTGAGGGACACATTCTCAGTTAGTCACTGCCTCCGTTTCCTTCCCTGCCTCCATGTTTCCTGCCTCCTTGTTTCCTGCCTCCTTCTTCATCCCCTCTTTTGCAGCCCAGTTGAGTGTTCCGTTGAAGAAGCTCTCGTTGCTCTGACGCTGGAAGTGCTTCCTGGAGCCCACCAGCGAGGGGTTGTTGACCAGGGTGTAGAGGAGCTGCCAGTGGCCCCGTGCCCGTTTAGAGATGGACACCTTAT
>TU2505865
ACTTGAGTCACTGTCACTTTTGAAATGCAATATGGCTGCAACACACAGCGAGAATTAAGTAGACGATCCTGaacagcaacattttcacaaCTATAAATTGAGAAAAATAACAATCCCAAAAATAACGATCCAAAACAATATCAGCGGAATTATAGTAGAGTTATTTTATAAAAGGTACAAGGTGACCTACAGCAAAGAGTTCAAGCAAACAGTTTCATCTGTCTACGTTTTAATCGCCATTTCACACATTTTCAACATAGATATTATTTATTAGCCTGGAATCAGAACAGAATTGTACCGTTTTGGAACAATTCAGTTTGGCTTCCAGGGTACCATAGATATTTACACCAGTCAGTGTTAATTAATGAACCGTTTCTTTATAACCTTCCATTACAGAGGAGTCTGTATATTAATAAATAGTTACATTCTaaccacatacacatggtcaaaCTAGCCTGGATTCCAAGAGGACATGTTCTGTTTCCATTGGTGAAATGGAGTGTATCAGTTAGGCTTCCAGGCTATGGTCAGACAGGAGTTCAGTGCCACACGACCTTTCCCGCTAGACTAGAGATTCTGTACGGCCATCAGAGCCATGCAAACAAAGAGACagacaacaaaacacacatccatccaggTCGATCCCACGATGTAGCACACCCTTGGACCAGGGCtgataagtagtgcactatataggaactaAGGTGCCATTTAGACAGGTAGCCACTCAGAAGACAGACTTCCTGAGGCATTTGAGCTAGAAGGTCTATGACATTTAGATCTAATCCTTCCAttttcaaaaaaataataattcagaaataattgattgattgagtCAATGGGAAACTTGCATGAAAAAAAGAGGCAAGCAGTCAGATCAATGCATAGACATATAATACTACAGTTATAATCTGCCCAAGAGCCATCCATACACCAACAAAGGCCATTCCAATTCAGTCAAatgaaattccaattccaattttCCCTCATTGAAAAGCAATAAGGAAATGTGTATTCTAAAAGATGCAGTATGAGCTCTGCCATTTCCTTGTTACTAAAAGGGACAAAACATGGTATCAgaccccagttagactagctgtctccatggtatcaGACCCCAGTTCGACGagctgtctccatggtatcagacccgcgttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagactagctgtctccatggtatcagaccccagttagacgagctgtctccatggtatcaGACCCCAGTTagactagctgtctccatggtatcagaccccagttagactagctgtctccatctgcgtcggctaatggggatcataATAAATCTaaaccatctaaaccactgtgaaatatctttAAGAAGCAAAAATCTTGTTTGaggctggtgtacaaaaccaaaacttaagaacgggaagcatagaaataccaCACAGAACAGAGCTACCACTTCTTAGACGGGCTTTCAATGCGAATGACAGATCTATGaaattctatgtgaatttggtcaggtcacccaaaTAGTTACATAATGCAGCTTTAAATTTCAGTTTGCTTCCTGAATtggaatggaattgaccccaagccTGAGGGACACATTCTCAGTTAGTCACTGCCTCCGTTTCCTTCCCTGCCTCCATGTTTCCTGCCTCCTTGTTTCCTGCCTCCTTCTTCATCCCCTCTTTTGCAGCCCAGTTGAGTGTTCCGTTGAAGAAGCTCTCGTTGCTCTGACGCTGGAAGTGCTTCCTGGAGCCCACCAGCGAGGGGTTGTTGACCAGGGTGTAGAGGAGCTGCCAGTGGCCCCGTGCCCGTTTAGAGATGGACACCTTAT

Function

NR:

description
PREDICTED: stimulated by retinoic acid gene 6 protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2505861 False 2518 lncRNA 0.45 3 1285408 1288020
TU2505864 False 2552 lncRNA 0.45 2 1285408 1288020
TU2505865 True 1877 lncRNA 0.42 4 1285408 1288020

Neighbor

gene id symbol gene type direction distance location
islr2 LOC106584836 coding upstream 849 1279833 ~ 1284559 (+)
sema7a LOC106584837 coding upstream 44660 1167991 ~ 1240748 (+)
man2c1 man2c1 coding upstream 149164 1075954 ~ 1136244 (+)
ca12 LOC106584842 coding upstream 256821 1008749 ~ 1028587 (+)
dapk2b dapk2 coding upstream 449964 789838 ~ 835444 (+)
LOC110510428 LOC106584867 coding downstream 437378 1725398 ~ 1755496 (+)
LOC118945762 NA coding downstream 459664 1747684 ~ 1749666 (+)
hacd3 hacd3 coding downstream 501576 1789596 ~ 1841114 (+)
LOC118945831 LOC106591986 coding downstream 691215 1979235 ~ 2008439 (+)
LOC110521156 NA coding downstream 1236673 2524693 ~ 2529356 (+)
G2190807 NA non-coding upstream 39586 1244007 ~ 1245822 (+)
G2190876 NA non-coding upstream 51858 1228698 ~ 1233550 (+)
G2190875 NA non-coding upstream 57169 1227610 ~ 1228239 (+)
G2190853 NA non-coding upstream 94225 1190184 ~ 1191183 (+)
G2190848 NA non-coding upstream 99756 1184381 ~ 1185652 (+)
G2190894 NA non-coding downstream 17814 1305834 ~ 1314502 (+)
G2190900 NA non-coding downstream 27525 1315545 ~ 1318812 (+)
G2190914 NA non-coding downstream 63887 1351907 ~ 1353311 (+)
G2190938 NA non-coding downstream 118212 1406232 ~ 1408487 (+)
G2190957 NA non-coding downstream 159802 1447822 ~ 1448166 (+)
G2190881 NA other upstream 32457 1251666 ~ 1252951 (+)
G2190529 NA other upstream 401311 882940 ~ 884097 (+)
LOC110521136 NA other upstream 668784 608566 ~ 616624 (+)
G2190199 NA other upstream 757942 523534 ~ 542502 (+)
G2190050 NA other upstream 922781 360931 ~ 362627 (+)
G2191047 NA other downstream 393534 1681554 ~ 1682049 (+)
G2191616 NA other downstream 959044 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1472240 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1605215 2892934 ~ 2915974 (+)
G2192059 NA other downstream 1634881 2922901 ~ 2924465 (+)

Expression


Co-expression Network