XLOC_000409 (klf12a)


Basic Information

Item Value
gene id XLOC_000409
gene name klf12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34496855 ~ 34558804 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000696
gagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgacacacgcacaaacacacggagagagagagagagagaagggggtcACATCAAAAAAGTGCGACATAGGAAAACAAGACAGAAATTAACAGGGAGACAGAGGAACGCTGTAAGGATAGTAGTCCTCGCTCACAATTACTGAGCTTAATAAACAAGGAACAGCGCTATCAGGATGTTGATGCTGGATGGGATGCCAACCCTGCCAGTTAAAATCAATCCTGCAGAGTCACAGAGACGGTCTCCTGTGATCCATGACTACACAGAGATGGGTGTGCTGGTGTTGAACCGCagatttcggacacagccagaTGACAGACGATTCCTGTCTGACCCCTTCCAGACGCAAACAGAGCCCGTGGATCTCTCCACTAACAAAGCCAGAACCTCCCCGTCACTTTCAGCATCTTCATCTTTATCTTCATCTCCCTCGTCTTCTTCGTCATCAATACGATTTTGTCCACGCTCTCCTCCCTCCAGCAAGTCTCTGCCATCTTCATCCCCATCATCATTATCCATGCCTTCGTCCTCCTCCACATCCGTCATAACCCCGGTTCCTCGTTTGAAGATGTCTCCATCCTGCTCTGTCCCGGTGGTGTCATCTCTTCCATCCAGGGGACTCAGGGGACAGTCATTTTTGCACATACCCCAGCTGATGCCTCCGTGTTCCAGTCCGGTTCACATCCATCCACGCCGGGTGCCGGTGGTGGTGCAGCCCATGCCGCTGGTCTACCCTGGGGTGGGTTCGCTGGGCAGCAGCAGGCTCATGATGCCACTTTTGGAGGAAAACAGGATGCACAGAAAAGtgaTGCACCGAATGGCAGATGGACTGTCACCGCGACGATCTCTGAGTGACAGCGAGGATGACGACTTGCCCAACGTGACCTTGGAGAGTGTGAATGAAACAGGATCCACCGCCTTGACCATCGCCCGCGCTGTCCAAGATTCCCTGTTGCCGTTCAGTATTGAGAGTCTGCGGAGGCCCAGGCCTTCAGAATCACCAGACTCAAAGAGAAGACGCATTCACAGGTGTGAGTTTGAGGGCTGCAATAAGGTTTACACCAAAAGCTCTCACCTTAAAGcccacagacgcacacacacagGTGAAAAGCCATATAAGTGCACGTGGGATAACTGCACATGGAAGTTCGCTCGCTCTGACGAACTGACGCGACATTACCGCAAACACACCGGCGTCAAACCGTTCAAATGCAGCGACTGTGACCGCAGTTTCTCCCGCTCGGACCACCTTGCCCTCCACCGCCGCAGACACGCTCCACAAACATGCCTAGTGTGAAAAAACACACTCAACGGACAAAACAAGCAGAAAGAGCGGGTCTCTTTCTGCCAGTGCCGCATGCAGAAGCTCTGGAAATATTCCCCGCACAACAATAATGAGGAGAAAGGTATGGTCAGTTCATGGAATTGGATAGATATGTATCAGCATTTATTTGCCTTTCCCTCATACGGTTTATTGTTCTGCACTTTTAGGTGAGGTTTATTCGTGAAGGTGGGAGCCTTGAGTCTTTAATAATGAACTATTAAAAGCCATGTGctgttaaatgtgttttatatagGCCTACAGGTTTCCTTCAGGTTTACTCATGGACGCCTAATGGAGTTGAAGGTTTTTCTTTTAACTCTCAAAACTATTTAGAAATCATGTTGTACTTATTTTTCTCGTTTAAAAAGCATCAAAGAGGAGCCTGAATATTTTCTGTGCAAGCTTTGGTTATGCATTTGGcaagtaaaagtcactttgaaaaacaaaaaacaaacaaaatatagttTGCAGGGTAATAAAGGCATGGCTGTAAGTGTGTAGAATTTAGTACATAGGCCTACAACATTATCAAAACCCACACAAAAAGACATTAAAACAAACATCACAGTATTTACTGCAAGTTCACAGCTTTGCATGGGCTCCTCCAGTTATCACTTTATTATGAATTTTgaaattgtttttgtttctttatgtATAACTGAATGTGAGGAGACCGACGTAACATTTTAAACTTTCCCTGCATCATTTGTGCACAAAACTAGTGTAGCAGATGTCTGTATATTTTATAGTCTCTACCATGTGGtatatcattttgtttgtttgtattgtttgtattGTATGTCATATATTTGTTCTGTATTCCAAGTTTGCACCCCGCTGTCCATTAATATGTGATGCCAAAATCTATAGTATTTTACAGGGAACCCTGATGACTAAAAATCATGAGTGTAAATGATCGTCAAATGGGCAGtccttttattattgttattattttcttttacaatGATGTATCTGTAAATGATGTTATGGTAAACATTTCAGTTTTATATGGATTTAACTGTGaatttatacataaatacagtatactgtatgttAGAAAAAAAGGCATGAATAAAAGCACCGATTTGTATGTTCAGAAAA
>TCONS_00000697
AACGTGTAAATTCTACTGTATAATCATCTCTTATTTTCTGAAAGTGCATATGTTTAATGACATCCTAACTGAATATGACACATGGGCAATGTCAATGAACAGTTATGTATCAGAACATTCCACACTGAGTCATTTATGGCATGCCAAATGTCATAATTCAAGATTGTTGATTTAAAAGGATCTAAAACAAGACTCACTGGCAAAATACAAGTCAGTTGTTGTCAATTTGCTGTGCTCACAAACGGAGTTGTGAACAGAACTCTCTGAATGATAAGAAACAAATGATTTTTCAAAAGTCAGCGCATCTGATCTTCATAAACATGACTATAAAATTCTTCACTTAGTAGCTATAGTAAACACTTCTCAGAATGATATATTAATTCTTATTAAACCATCTGGCGTGCTCTCTGACATGTGTTTATTGTTATCCTCGCACAGTCTATCTATTGGACTGACATAAAGCATAACTCCTATATGATCTGTAAGACTAATCCAAGACTGAAAGCTTTCTACTATGTCGTGTCATCacagataaacaaataataaaacattaaataacattttttttcttccatcccTCACAGGAACAGCGCTATCAGGATGTTGATGCTGGATGGGATGCCAACCCTGCCAGTTAAAATCAATCCTGCAGAGTCACAGAGACGGTCTCCTGTGATCCATGACTACACAGAGATGGGTGTGCTGGTGTTGAACCGCagatttcggacacagccagaTGACAGACGATTCCTGTCTGACCCCTTCCAGACGCAAACAGAGCCCGTGGATCTCTCCACTAACAAAGCCAGAACCTCCCCGTCACTTTCAGCATCTTCATCTTTATCTTCATCTCCCTCGTCTTCTTCGTCATCAATACGATTTTGTCCACGCTCTCCTCCCTCCAGCAAGTCTCTGCCATCTTCATCCCCATCATCATTATCCATGCCTTCGTCCTCCTCCACATCCGTCATAACCCCGGTTCCTCGTTTGAAGATGTCTCCATCCTGCTCTGTCCCGGTGGTGTCATCTCTTCCATCCAGGGGACTCAGGGGACAGTCATTTTTGCACATACCCCAGCTGATGCCTCCGTGTTCCAGTCCGGTTCACATCCATCCACGCCGGGTGCCGGTGGTGGTGCAGCCCATGCCGCTGGTCTACCCTGGGGTGGGTTCGCTGGGCAGCAGCAGGCTCATGATGCCACTTTTGGAGGAAAACAGGATGCACAGAAAAGtgaTGCACCGAATGGCAGATGGACTGTCACCGCGACGATCTCTGAGTGACAGCGAGGATGACGACTTGCCCAACGTGACCTTGGAGAGTGTGAATGAAACAGGATCCACCGCCTTGACCATCGCCCGCGCTGTCCAAGATTCCCTGTTGCCGTTCAGTATTGAGAGTCTGCGGAGGCCCAGGCCTTCAGAATCACCAGACTCAAAGAGAAGACGCATTCACAGGTGTGAGTTTGAGGGCTGCAATAAGGTTTACACCAAAAGCTCTCACCTTAAAGcccacagacgcacacacacagGTGAAAAGCCATATAAGTGCACGTGGGATAACTGCACATGGAAGTTCGCTCGCTCTGACGAACTGACGCGACATTACCGCAAACACACCGGCGTCAAACCGTTCAAATGCAGCGACTGTGACCGCAGTTTCTCCCGCTCGGACCACCTTGCCCTCCACCGCCGCAGACACGCTCCACAAACATGCCTAGTGTGAAAAAACACACTCAACGGACAAAACAAGCAGAAAGAGCGGGTCTCTTTCTGCCAGTGCCGCATGCAGAAGCTCTGGAAATATTCCCCGCACAACAATAATGAGGAGAAAGGTATGGTCAGTTCATGGAATTGGATAGATATGTATCAGCATTTATTTGCCTTTCCCTCATACGGTTTATTGTTCTGCACTTTTAGGTGAGGTTTATTCGTGAAGGTGGGAGCCTTGAGTCTTTAATAATGAACTATTAAAAGCCATGTGctgttaaatgtgttttatatagGCCTACAGGTTTCCTTCAGGTTTACTCATGGACGCCTAATGGAGTTGAAGGTTTTTCTTTTAACTCTCAAAACTATTTAGAAATCATGTTGTACTTATTTTTCTCGTTTAAAAAGCATCAAAGAGGAGCCTGAATATTTTCTGTGCAAGCTTTGGTTATGCATTTGGcaagtaaaagtcactttgaaaaacaaaaaacaaacaaaatatagttTGCAGGGTAATAAAGGCATGGCTGTAAGTGTGTAGAATTTAGTACATAGGCCTACAACATTATCAAAACCCACACAAAAAGACATTAAAACAAACATCACAGTATTTACTGCAAGTTCACAGCTTTGCATGGGCTCCTCCAGTTATCACTTTATTATGAATTTTgaaattgtttttgtttctttatgtATAACTGAATGTGAGGAGACCGACGTAACATTTTAAACTTTCCCTGCATCATTTGTGCACAAAACTAGTGTAGCAGATGTCTGTATATTTTATAGTCTCTACCATGTGGtatatcattttgtttgtttgtattgtttgtattGTATGTCATATATTTGTTCTGTATTCCAAGTTTGCACCCCGCTGTCCATTAATATGTGATGCCAAAATCTATAGTATTTTACAGGGAACCCTGATGACTAAAAATCATGAGTGTAAATGATCGTCAAATGGGCAGtccttttattattgttattattttcttttacaatGATGTATCTGTAAATGATGTTATGGTAAACATTTCAGTTTTATATGGATTTAACTGTGaatttatacataaatacagtatactgtatgttAGAAAAAAAGGCATGAATAAAAGCACCGATTTGTATGTTCAGAAAAGACTCTTGTGTGaatttaaacatgatttatgaaatgttaaaatgttagaTCACACTCTTCACTCCAGATTAATAAGATCTAGCCCCGGATGCCAGATCCtgtcagaaaatgtctgtttctttgGGTATCCAGACAACAAGCCAGCGAGCAGACTCACCAATGCCCAAACCTTTTATTCAACAGTCTCTTAAATATAAGAGTTGACTAAGAAGCAGAAGCAGATGACGGTCGGTCATGAGGATAAAGGaagagcagagtttattgaataatcttagttgcATATGATTTAATGCTTAgacttggatggatggatggatgtcacAACTGTCCCCAATTACAGAATTCATTTAAGAGCTTGCCATAATAACAATGTACACTTTTAATTTTATCACCGTTTCACTAtgttatttaatttgaaaaaaaaaaaaaagtaatttttgaaaacaattaattcattttaaagttCAAAGAAGTATTTTAGTAAAGTTTCAGTGTAGATTTtcagtgaaaaaaatatttttgttcagttttttttaagcCTGGCAATTGGTTGTTGCTTGTTCCTTTAGTGTAATTATATGTCCAACTTAAcacatttaacaatttaaccaATTTACATTTAATCTGTTTACCaacaactaaaactaaaatcCAACCTGATGTTTTagaatttttcttattattacattttaatgaatgttGCAATCGTCCCCCTGCTCGGAGTCAGTTGCAAAGTTTGACTTTGTCTGTTGAGGTTTCTGCATACTGTACATTATCATATGTACACATTACAGCAATGTGGGTTGGTGTCAAATAGATGTGGCTTTATTGTATTAAAAGTTTGGCTTTCTCTGTGAAACTGAATGAAATGCAAAAAGTGTTGCAACTGCTCTTCCCCTATTGTTTTACTCTCTGGTAATCATATAATATTCCTATTTAGTGCAGTTGTTGCATATTAAACATAATATGTGCAgttttaatacatataaaatgtgCTTCTTAAAACCCACCACAGGGGTGCAGCAGTTTAccagggttaaaaaaaaaaaaagtctcactaTCCTCTATTCAAACAGCTGTTAAGTCCTAAACTGGACACCATTACGGAGGTCAGTTCATGACACGCAGTTTAACCTTTAACCCACCTTTACCCTACTCTTGACGAACGAAATGAAAACAAATGCCATCTTTCCCCTTGGGTGTTGTCAGCGTTCGTTAAGTAATGATGAAACACCTTTCGTTTCTGTGGTGATTGCGCAGGTGCGTGGGTTCAATCAGGGAGCGTCTTCCTTTTCGTGACCTCCACATATTTGGATATTGGCACAAAGTATTTAATGATTCAGAAATGTTCTAGATTTTATCTGCGTGTCTGGTTGCATCATATGGAACACTTTTCTAATCGGTCCTCCTTTTGCAAATGTCCTCAATGATTAGTTTTcagtcatcattcattttctttttggcttagtccctttattaatctcggattgccacagcggaatgaaccgccaaccatgtgtgtgtgtgtgtgtgtgtgtatgtatatatatatataaataataaaatataattcattcagcagaatgagccgccaactaagagcatatgttttacacatgcagccgatgccttttcagctgcaacccagtactgagaaacacccatacacactctttcatacacacacatacactacgaccaatttagtttatccaattcccctatactgcATGCCTTTTAGATTGTGGGTTAAACCAGCACCCatagaaaacccacacgaacacgaataatatataatagaatatataaaaacattttaaataaacaatggattaacacaattatttttgaatgaaagaatattttaaaatattaaaatattttagcttAAAACTGACTACATTCTTGTTGTTGAAAAAGTGAAATATtcgctgtaaaaaaatgctgggttccaaactgattaagttagcttatcacatttaagttgactgaacatgcaacaattaagttgttccaaaagaAATCTGAAAAGAATAATGTTtccactcattttaaataagtaatttggaCAAACAGCAGAA

Function

symbol description
klf12a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human KLF12 (Kruppel like factor 12).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9188 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human KLF12 (Kruppel like factor 12).

Ensembl:

ensembl_id ENSDARG00000015312

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000696 False 2479 mRNA 0.44 6 34496855 34556723
TCONS_00000697 True 4931 mRNA 0.39 5 34527213 34558804

Neighbor

gene id symbol gene type direction distance location
XLOC_000408 NA coding upstream 42408 34450659 ~ 34454447 (+)
XLOC_000407 CR848003.1 coding upstream 96501 34400240 ~ 34400354 (+)
XLOC_000406 kctd12.2 coding upstream 199452 34295925 ~ 34297403 (+)
XLOC_000405 slc5a7a coding upstream 234862 34243650 ~ 34261993 (+)
XLOC_000404 arl6 coding upstream 262799 34203817 ~ 34234056 (+)
XLOC_000410 gpalpp1 coding downstream 126601 34685405 ~ 34694365 (+)
XLOC_000411 gtf2f2a coding downstream 136569 34695373 ~ 34706903 (+)
XLOC_000412 CR339054.7 coding downstream 137699 34696503 ~ 34727517 (+)
XLOC_000413 zgc:172122 coding downstream 204735 34763539 ~ 34807059 (+)
XLOC_000414 NA coding downstream 298564 34857368 ~ 34861057 (+)
XLOC_000403 dre-mir-734 non-coding upstream 373883 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 non-coding upstream 529582 33967157 ~ 33967273 (+)
XLOC_000400 CU915566.1 non-coding upstream 761721 33735018 ~ 33735134 (+)
XLOC_000415 NA non-coding downstream 475490 35034294 ~ 35093512 (+)
XLOC_000421 NA non-coding downstream 1337588 35896392 ~ 35898437 (+)
XLOC_000425 BX324156.1 non-coding downstream 1595457 36154261 ~ 36154377 (+)
XLOC_000431 NA non-coding downstream 2407196 36966000 ~ 36966282 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G208287 NA non-coding CI01000049 null 3756903 ~ 3760056 (-)