G2191761


Basic Information

Item Value
gene id G2191761
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2632696 ~ 2633085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2506984
cgagGATACACACGGGGATGGTTTAGGGTAATATAGTATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGGTAATACAGGATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAATACACACATCATATTCTAATtatgtacactctctctctctctctctctctctctctctctctctctcttcccccccaacctctctctctctcttcccc
>TU2506987
cgagGATACACACGGGGATGGTTTAGGGTAATATAGTATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAATACACACATCATATTCTAATtatgtacactctctctctctctctctcttccccccaacctctctctctctctctctctctctctctctctctctctcttcccccccaacctctctctctctcttcccc
>TU2506988
cgagGATACACACGGGGATGGTTTAGGGTAATATAGTATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAATACACACATCATATTCTAATtatgttctctctctctctctctctctctctctctctctcttcccccccaacctctctctctctcttcccc
>TU2506989
cgagGATACACACGGGGATGGTTTAGGGTAATATAGTATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGGATACACACTAGGATGGTTTAGGGTTAATATAGAATACACACATCATATTCTAATtatgttctctctctctctctctctctctctctctctctcttcccccccaacctctctctctctcttcccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2506984 False 360 lncRNA 0.40 2 2632696 2633085
TU2506987 False 324 lncRNA 0.42 2 2632696 2633085
TU2506988 False 273 lncRNA 0.40 3 2632696 2633085
TU2506989 True 306 lncRNA 0.40 3 2632696 2633085

Neighbor

gene id symbol gene type direction distance location
map2k1 map2k1 coding upstream 44842 2535960 ~ 2587854 (+)
LOC110521156 NA coding upstream 103340 2524693 ~ 2529356 (+)
LOC118945831 LOC106591986 coding upstream 624257 1979235 ~ 2008439 (+)
hacd3 hacd3 coding upstream 791582 1789596 ~ 1841114 (+)
LOC118945762 NA coding upstream 883030 1747684 ~ 1749666 (+)
smad6b smad6 coding downstream 178808 2811893 ~ 2860702 (+)
LOC118945783 NA coding downstream 198928 2832013 ~ 2837148 (+)
smad3b LOC107755098 coding downstream 259849 2892934 ~ 2915974 (+)
iqch LOC106584827 coding downstream 308008 2941093 ~ 3052608 (+)
LOC110522690 skor1 coding downstream 623310 3256395 ~ 3270508 (+)
G2191750 NA non-coding upstream 3050 2629008 ~ 2629646 (+)
G2191725 NA non-coding upstream 38679 2593115 ~ 2594017 (+)
G2191724 NA non-coding upstream 43067 2589212 ~ 2589629 (+)
G2191707 NA non-coding upstream 49891 2503457 ~ 2582805 (+)
G2191765 NA non-coding downstream 6419 2639504 ~ 2640154 (+)
G2191766 NA non-coding downstream 7284 2640369 ~ 2643097 (+)
G2191770 NA non-coding downstream 13088 2646173 ~ 2646390 (+)
G2191772 NA non-coding downstream 17227 2650312 ~ 2651480 (+)
G2191773 NA non-coding downstream 18896 2651981 ~ 2652228 (+)
G2191616 NA other upstream 385194 2247064 ~ 2247502 (+)
G2191047 NA other upstream 950647 1681554 ~ 1682049 (+)
G2190881 NA other upstream 1379745 1251666 ~ 1252951 (+)
G2190529 NA other upstream 1748599 882940 ~ 884097 (+)
LOC110521136 NA other upstream 2016072 608566 ~ 616624 (+)
G2191994 NA other downstream 127175 2760260 ~ 2762972 (+)
G2192059 NA other downstream 289816 2922901 ~ 2924465 (+)
LOC110521165 fintrim other downstream 1151422 3784498 ~ 3796399 (+)

Expression


Co-expression Network