Gene
RNA
| Item | Value |
|---|---|
| gene id | G2192054 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 2918842 ~ 2920294 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2507354 | False | 478 | lncRNA | 0.39 | 2 | 2918842 | 2920294 |
| TU2507355 | True | 361 | lncRNA | 0.37 | 2 | 2918842 | 2920294 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| smad3b | LOC107755098 | coding | upstream | 2868 | 2892934 ~ 2915974 (+) |
| smad6b | smad6 | coding | upstream | 58140 | 2811893 ~ 2860702 (+) |
| LOC118945783 | NA | coding | upstream | 81694 | 2832013 ~ 2837148 (+) |
| zwilch | zwilch | coding | upstream | 285558 | 2594442 ~ 2633284 (+) |
| map2k1 | map2k1 | coding | upstream | 330988 | 2535960 ~ 2587854 (+) |
| iqch | LOC106584827 | coding | downstream | 20799 | 2941093 ~ 3052608 (+) |
| LOC110522690 | skor1 | coding | downstream | 336101 | 3256395 ~ 3270508 (+) |
| LOC118945764 | NA | coding | downstream | 350223 | 3270517 ~ 3271251 (+) |
| LOC110521158 | LOC106584817 | coding | downstream | 356147 | 3276441 ~ 3325034 (+) |
| tle3a | LOC104946490 | coding | downstream | 546002 | 3466296 ~ 3565245 (+) |
| G2192049 | NA | non-coding | upstream | 41177 | 2877183 ~ 2877665 (+) |
| G2192047 | NA | non-coding | upstream | 43970 | 2874566 ~ 2874872 (+) |
| G2191995 | NA | non-coding | upstream | 146647 | 2771906 ~ 2772195 (+) |
| G2191993 | NA | non-coding | upstream | 159749 | 2758890 ~ 2759093 (+) |
| G2191987 | NA | non-coding | upstream | 175041 | 2743481 ~ 2743801 (+) |
| G2192059 | NA | non-coding | downstream | 2607 | 2922901 ~ 2924465 (+) |
| G2192071 | NA | non-coding | downstream | 48786 | 2969080 ~ 2969652 (+) |
| G2192111 | NA | non-coding | downstream | 149051 | 3069345 ~ 3071805 (+) |
| G2192132 | NA | non-coding | downstream | 214090 | 3134384 ~ 3135087 (+) |
| G2192147 | NA | non-coding | downstream | 242201 | 3162495 ~ 3163081 (+) |
| G2191994 | NA | other | upstream | 155870 | 2760260 ~ 2762972 (+) |
| G2191616 | NA | other | upstream | 671340 | 2247064 ~ 2247502 (+) |
| G2191047 | NA | other | upstream | 1236793 | 1681554 ~ 1682049 (+) |
| G2190881 | NA | other | upstream | 1665891 | 1251666 ~ 1252951 (+) |
| LOC110521165 | fintrim | other | downstream | 864213 | 3784498 ~ 3796399 (+) |
| G2192425 | LOC106584810 | other | downstream | 989810 | 3910104 ~ 3910366 (+) |
| LOC110521161 | LOC106584807 | other | downstream | 1014733 | 3931206 ~ 3937155 (+) |
