G2192410


Basic Information

Item Value
gene id G2192410
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3876526 ~ 3878264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2507815
AGGACGTATAGTTACTTATCAATAACTTTATTAGTATCACAACAACAATATTTACATAGACAATGTATCAGTCTATAGAATACATTACAGTAAACATATTTACATAGACAATGTATCAGTCTATAGAATACATTACAGTAAACATATTTACATAGACAATGAGGCAGTttatacaatacattacagtaaaCATAATAACATAGACAATGTTATATCAGTCTATAAAATATAATTACAGTAAACATATTTACATAGAAGATGTATCagtctataaaatatatttacagtAAACTTCATCAGAACTGTTTGTATTTACTGTATATGTCTAACAGTGTTTTATAGGCCCACATACACTTGTAAAATACACAGTGAAGAAGAGTATTTCTAAGTGCTTAGGTTAATGGTATCGTACCCTAATCTCACCGTTCACTCTCTTACACATGTTGCTAGAACAGCTTTGGACCATGGATGAGTCCCTACTGTTTCCGGTTTCCTGTCTATAGAAGTAGAAAGAGGACTGTGGATGGATTTAGAACCcattttagcatggacattgtCATTGAGGGCTTccgccattttaaagtagtcaactggggtGGGGATTTCTATGGGTTGGGAGCCATCTGTCAATGATCAGAGCATTGCCTTCTTCTTCAAAGTGGgttacacatatatatatttttaaatagctTTATGTTACATTACTGCCATCTATTGGCCAAAATAAATTAATGCATTTTCCCCCCAATGTAAAATAAATGGTTCAAAACTCCAGCACTGCAGGTGGCGCTAAATCACCAATATTACACTGGACAAAAACATAAAaaacgcaacatacaacaatttcaacgattttactgaatCATCGTCTGATTTTGATCTGCAggagaagaagccggatgtggaggtcctgggttggcgtggttacaagtagtttgtggttgtgaggccggatggaagtactgccaaattctctaaaatgacgttggaggcggcttatgatagagaaatgaacatttaattctctggcaacagttctggtggacattcctgcagtcagcatgccaattgcacgctctctcaacttgagacatctgtggcgttgtgttgcgtgacaaaactgcacattttagagtggccttttattgtccctagcacaaggtgcacctgtgtaatgatcatgctgtttaatcaggttcttgatataccacacctgtcaggtggatggattatctttgcaaaggagaaatgctcactaacagggatgtcaacAAATCTGtccaaaacatttgagagaaataaggtttttgtgcgtatggaacatttctgtgatcttttatttcagctcatgaaacatgagaccaacactttacatgttgagtttatatttttgttcggtgtagaTAAAAATGCTTTTTATAAAACACAAAATAAGAAGAAAATGTCCCACTTTAAAAATGGAGAAAGTCcacaatggcgctgcccatgatGTCACAACAGCCATTatggcacagatacaaatatAAGCCCTCTGTCTAGCTCTATGTTCCTGTCCTACTTGCAACAGCTCTTCCTGTTGTCTCTGTTGGAGTGGTCAGCTGACAGATGGAGAGTCTCCTCACATTGCTGATCCTGCTGG

Function

NR:

description
hypothetical protein EH28_03751

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2507815 True 1639 lncRNA 0.38 2 3876526 3878264

Neighbor

gene id symbol gene type direction distance location
LOC110521164 LOC106584811 coding upstream 45227 3827634 ~ 3831299 (+)
LOC118945791 LOC106584811 coding upstream 57750 3813375 ~ 3818776 (+)
LOC110521165 fintrim coding upstream 80127 3784498 ~ 3796399 (+)
ddb2 ddb2 coding upstream 149926 3688608 ~ 3726600 (+)
tle3a LOC104946490 coding upstream 311281 3466296 ~ 3565245 (+)
LOC118945778 NA coding downstream 16888 3895152 ~ 3896777 (+)
LOC110521161 LOC106584807 coding downstream 52942 3931206 ~ 3937155 (+)
LOC110520937 tmem80 coding downstream 79969 3958233 ~ 4072671 (+)
LOC110521167 eps8l2 coding downstream 201775 4080039 ~ 4175391 (+)
LOC110521168 fadsd5 coding downstream 335321 4213585 ~ 4227030 (+)
G2192407 NA non-coding upstream 14136 3861013 ~ 3862390 (+)
G2192406 NA non-coding upstream 15878 3859813 ~ 3860648 (+)
G2192404 NA non-coding upstream 18354 3857911 ~ 3858172 (+)
G2192396 NA non-coding upstream 36931 3835648 ~ 3839595 (+)
G2192366 NA non-coding upstream 74847 3798411 ~ 3801679 (+)
G2192369 NA non-coding downstream 4731 3882995 ~ 3886325 (+)
G2192422 NA non-coding downstream 30191 3908455 ~ 3908766 (+)
G2192423 NA non-coding downstream 30537 3908801 ~ 3909130 (+)
G2192424 NA non-coding downstream 31175 3909439 ~ 3909642 (+)
G2192427 NA non-coding downstream 37320 3915584 ~ 3915808 (+)
iqch LOC106584827 other upstream 824074 2941093 ~ 3052608 (+)
G2192059 NA other upstream 952061 2922901 ~ 2924465 (+)
smad3b LOC107755098 other upstream 967344 2892934 ~ 2915974 (+)
G2191994 NA other upstream 1113554 2760260 ~ 2762972 (+)
G2192425 LOC106584810 other downstream 31840 3910104 ~ 3910366 (+)
LOC118945757 LOC106584793 other downstream 688487 4566366 ~ 4698448 (+)
G2193497 NA other downstream 899436 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 1115138 4970661 ~ 4994824 (+)

Expression


Co-expression Network