XLOC_004092



Basic Information


Item Value
gene id XLOC_004092
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18849926 ~ 18852369 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008466
attttaagttaataatGACTACtactaatatatgtgtgtgtattatttgaCAAAATGGACTTGAGTagacacattaaaataaacattcttatAAACAGacttttttctttaacaaaataaattatttgtttgtgGAATACGTATGTTTTGATGAATCTGTGCTTTACAGATTCACACAGTCTTTCACACTTAAAAAAGACGCTCGTTTTCGCCACCTACTGGCGTTACAGTGTAGTTTACATTATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGGTAAAACACTTTTCTTAAGTTATTTTATCGTTAAAGTGCTCTAATAAATGCTCTGTTTTAATGTTAAATCAGTAAATTGTTTTGTAACACCAAAACAAATACTTACCTGATTTTTAAAGTCGAGATACTACTAGTACATACTAGTACATTGCTAACGTAATATACTAAGGTCTACTACCGCCCATCATATcagaacttaatttaaaaaatgactatATGAAATGATATTTTTATCATTGTTAACATAACCagtgttttatttagtattttcacTGCTTATAAATGGTGCTAATATAGTTTTTTGTTACCTCAGAAATCATTTATTGCTGCGGCCGGACAGCAAACTACTCTTTGGCAGGTACATTAAGAAAATGGGCAAAAGATGAGTCCTAACATTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCTACAGTTCTAGACATTAAAGAGAACAAAGAAACTGTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTAGAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGGTAATCATTtgtgcatgcacgcacacacacacacgcacacacacacacgcacacacttgtatggacccttttcacatttgcgTGTTTTTTAGCAGCTGAAATCATCATAGTTGGTAAACTCCGAGcgcagtgaatgagagagtacaacttttttttttttttacaattctatttGCTACagaaaacaatgtcaaatttactgtcctgtccccaTAGACACTTCATTAGATACTCCTcgcattgtttttttaatttgacatAAAGATTGTATTAtacataaatgaatgtaaatgtacataagtttaaaaaatctaaatattaaaaactttaaggtATTTAGGATGCAGATGATCTTTAACAACACATCATAACAgttttgtgaaaagggtccattaattGTTTATGGGGATTCTTCATAGCTGTAatggtttttatactgtacagactgtattctGTATACTCTACCACTTAcaggacactttttttttctttttttttttttaggaaaatggaGTAAAAGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtgaaaATACATTGATTCATTGTGAAATTTCTCTAACTTCAAATCTATCCTGCACAATAATCCTGCAGGAACTGTATATTTTAATAGACCTGTAGGATTGTAATTCCTGCAGGAACAATCCCTGCATAAATTTCCTTCATAAATTTCTGTCTTAAAATTTCCTTCACAAAATTCCTGCAGGTATTCCTACAggaaaatgagctgaaaatcCTGTAGGATACCTGTATGAAATTCCTGCAGGATTCCTGTAGGCTATTTTTG
>TCONS_00008465
attttaagttaataatGACTACtactaatatatgtgtgtgtattatttgaCAAAATGGACTTGAGTagacacattaaaataaacattcttatAAACAGacttttttctttaacaaaataaattatttgtttgtgGAATACGTATGTTTTGATGAATCTGTGCTTTACAGATTCACACAGTCTTTCACACTTAAAAAAGACGCTCGTTTTCGCCACCTACTGGCGTTACAGTGTAGTTTACATTATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATTGCTGCGGCCGGACAGCAAACTACTCTTTGGCAGGTACATTAAGAAAATGGGCAAAAGATGAGTCCTAACATTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCTACAGTTCTAGACATTAAAGAGAACAAAGAAACTGTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTAGAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaaaatggaGTAAAAGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtgaaaATACATTGATTCATTGTGAAATTTCTCTAACTTCAAATCTATCCTGCACAATAATCCTGCAGGAACTGTATATTTTAATAGACCTGTAGGATTGTAATTCCTGCAGGAACAATCCCTGCATAAATTTCCTTCATAAATTTCTGTCTTAAAATTTCCTTCACAAAATTCCTGCAGGTATTCCTACAggaaaatgagctgaaaatcCTGTAGGATACCTGTATGAAATTCCTGCAGGATTCCTGTAGGCTATTTTTG
>TCONS_00008785
CGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATTGCTGCGGCCGGACAGCAAACTACTCTTTGGCAGAAAATGGGCAAAAGATGAGTCCTAACATTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCTACAGTTCTAGACATTAAAGAGAACAAAGAAACTGTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTAGAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAg
>TCONS_00008784
CGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATTGCTGCGGCCGGACAGCAAACTACTCTTTGGCAGGTACATTAAGAAAATGGGCAAAAGATGAGTCCTAACATTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCTACAGTTCTAGACATTAAAGAGAACAAAGAAACTGTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTAGAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAg

Function


GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0021546 rhombomere development biological_process
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0055016 hypochord development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0098727 maintenance of cell number biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008466 False 1892 lncRNA 0.33 3 18849926 18852369
TCONS_00008465 False 1075 lncRNA 0.35 5 18849926 18852369
TCONS_00008785 False 417 lncRNA 0.41 5 18850270 18852070
TCONS_00008784 True 427 lncRNA 0.41 5 18850270 18852070

Neighbor


gene id symbol gene type direction distance location
XLOC_004091 pfkfb2b coding downstream 30748 18784847 ~ 18819178 (-)
XLOC_004090 id1 coding downstream 144623 18704191 ~ 18705303 (-)
XLOC_004089 zmynd8 coding downstream 245384 18560667 ~ 18604542 (-)
XLOC_004088 dido1 coding downstream 291997 18531984 ~ 18557929 (-)
XLOC_004087 fgd5a coding downstream 381356 18395879 ~ 18468570 (-)
XLOC_004093 NA coding upstream 236045 19088414 ~ 19091101 (-)
XLOC_004094 rhol coding upstream 243062 19095431 ~ 19097746 (-)
XLOC_004095 CT737428.1 coding upstream 328083 19180452 ~ 19180555 (-)
XLOC_004096 BX511159.1 coding upstream 563809 19416178 ~ 19416315 (-)
XLOC_004097 slc2a9l1 coding upstream 637966 19490335 ~ 19501440 (-)
XLOC_004063 CR854846.1 misc downstream 2722248 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 6158235 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 6228159 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 6258630 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 6336664 12512966 ~ 12513262 (-)
XLOC_004082 LO018315.7 non-coding downstream 701438 18144285 ~ 18148488 (-)
XLOC_004078 CR589944.2 non-coding downstream 941244 17906902 ~ 17908682 (-)
XLOC_004073 NA non-coding downstream 1620073 17223850 ~ 17229853 (-)
XLOC_004072 CR769769.3 non-coding downstream 1702465 17144309 ~ 17147461 (-)
XLOC_004071 CR769769.2 non-coding downstream 1751993 17093753 ~ 17097933 (-)
XLOC_004104 NA non-coding upstream 2099687 20952056 ~ 20953249 (-)
XLOC_004108 NA non-coding upstream 2265251 21117620 ~ 21119973 (-)

Expression



Co-expression Network