G2193458


Basic Information

Item Value
gene id G2193458
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4716393 ~ 4718897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2509224
tttcaaacagtccatttatattttccaacggggctatacatttgggtgaggttttttttcttgcctgagtagcctcgtttcactgccaaaaataaaatgaaaccatctagtgttcagcgaaataacaacacaatgtgaaatacaggtagcctagtcaaataattaacatccaatcacattaaccgtcaCTCTCTAGTGGGGATTCCTCTAACGGTCCGTATGAAGCCAAACATAACTGCTGTTCATTCCGTTTACTCAATCAAATGGATAAATGGTTAAAGTCAGGTGGgtcccagcagtactacacctgcacctgtcgacgacacgttgttctgcttccacgagctcatccaatgctagcatcagtaattctacatttgttgttagcccagctagcatggacacaggcagttgtgaatctgatgcagccgaagagctactagACCATATGTCTCCTCTAGTCACGTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGGCTCCTCTAGTCACCTCCAGGCCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGGCTCCTCTAGTCACCTCCAGGCCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCGTATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGACTCCTCTAGTCACCTCCAGACCATATGTCTCCACTAGTCATCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGGCTCCTCTAGTCACCTCCAGGCCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCGTATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCGTATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGGCTCCACTAGTCACCTCCAGACCATATGACTCCTCTATACACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGATCTCAAGGCCTACACTTTGACAGAGACTGCAGGCTGTGATTGGGCTAAGGGGAAGACCTGGGGAGAGTGCCCAGGGTGAGCTGGGGTTTTGGGTGAGCATCCAGAGTAGCCTGTCCTAGTGGTCAGGGGATTTGGGACTGGGGGCGTCATGGGGTCAGTCTCCTGTTTTTTGGTCCAAGCAGACTGTGATCTTACTGGTTGATTTATTTCCCGCCCACCTCCACCCAGCCGTTTAATTGGT
>TU2509227
tttcaaacagtccatttatattttccaacggggctatacatttgggtgaggttttttttcttgcctgagtagcctcgtttcactgccaaaaataaaatgaaaccatctagtgttcagcgaaataacaacacaatgtgaaatacaggtagcctagtcaaataattaacatccaatcacattaaccgtcaCTCTCTAGTGGGGATTCCTCTAACGGTCCGTATGAAGCCAAACATAACTGCTGTTCATTCCGTTTACTCAATCAAATGGATAAATGGTTAAAGTCAGGTGGgtcccagcagtactacacctgcacctgtcgacgacacgttgttctgcttccacgagctcatccaatgctagcatcagtaattctacatttgttgttagcccagctagcatggacacaggcagttgtgaatctgatgcagccgaagagctactagACCATATGTCTCCTCTAGTCACGTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCACTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCACTAGTCACCTCCAGACCATATGTCTCCACTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGGCTCCTCTAGTCACCTCCAG
>TU2509225
CTCCTCTAGTCACCTCCAGACCTCCAGACCGTATGTCTCCTCTAGTCACTTCCAGACCTCCAGACCATATGACTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTATAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGACTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCATATGGCTCCACTAGTCACCTCCAGACCATATGACTCCTCTATACACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGACCTCCAGACCATATGTCTCCTCTAGTCACCTCCAGATCTCAAGGCCTACACTTTGACAGAGACTGCAGGCTGTGATTGGGCTAAGGGGAAGACCTGGGGAGAGTGCCCAGGGTGAGCTGGGGTTTTGGGTGAGCATCCAGAGTAGCCTGTCCTAGTGGTCAGGGGATTTGGGACTGGGGGCGTCATGGGGTCAGTCTCCTGTTTTTTGGTCCAAGCAGACTGTGATCTTACTGGTTGATTTATTTCCCGCCCACCTCCACCCAGCCGTTTAATTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2509224 False 1481 lncRNA 0.50 5 4716393 4718897
TU2509227 False 775 lncRNA 0.46 3 4716393 4717695
TU2509225 True 645 lncRNA 0.53 3 4717849 4718897

Neighbor

gene id symbol gene type direction distance location
LOC118945760 NA coding upstream 7004 4704102 ~ 4713241 (+)
LOC118945757 LOC106584793 coding upstream 17945 4566366 ~ 4698448 (+)
LOC118945759 NA coding upstream 145430 4570173 ~ 4570963 (+)
LOC118945758 LOC103466506 coding upstream 183766 4378293 ~ 4532627 (+)
LOC110521166 LOC106584798 coding upstream 411159 4303164 ~ 4305234 (+)
LOC110522695 LOC106590753 coding downstream 129259 4848156 ~ 4869652 (+)
LOC110521175 NA coding downstream 167721 4886618 ~ 4950815 (+)
LOC110521176 LOC106584785 coding downstream 251764 4970661 ~ 4994824 (+)
rab3il1 LOC106584776 coding downstream 286733 5005630 ~ 5033497 (+)
LOC110522698 LOC106593352 coding downstream 493469 5212366 ~ 5246288 (+)
G2192766 NA non-coding upstream 20258 4691164 ~ 4696135 (+)
G2192756 NA non-coding upstream 53575 4661660 ~ 4662818 (+)
G2192744 NA non-coding upstream 95831 4620253 ~ 4620562 (+)
G2192743 NA non-coding upstream 96743 4619070 ~ 4619650 (+)
G2193461 NA non-coding downstream 1929 4720826 ~ 4721054 (+)
G2193462 NA non-coding downstream 3009 4721906 ~ 4722116 (+)
G2193471 NA non-coding downstream 13274 4732171 ~ 4732860 (+)
G2193472 NA non-coding downstream 14086 4732983 ~ 4734456 (+)
G2193475 NA non-coding downstream 23781 4742678 ~ 4742983 (+)
LOC110521161 LOC106584807 other upstream 779294 3931206 ~ 3937155 (+)
G2192425 LOC106584810 other upstream 806027 3910104 ~ 3910366 (+)
LOC110521165 fintrim other upstream 930685 3784498 ~ 3796399 (+)
iqch LOC106584827 other upstream 1663941 2941093 ~ 3052608 (+)
G2193497 NA other downstream 58803 4777700 ~ 4779264 (+)
G2193611 LOC106584794 other downstream 387161 5106058 ~ 5108156 (+)
G2193620 NA other downstream 404616 5123513 ~ 5124709 (+)
G2193655 NA other downstream 479629 5198526 ~ 5200369 (+)

Expression


Co-expression Network