G2193953


Basic Information

Item Value
gene id G2193953
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5032543 ~ 5033475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2509876
actgaAGTACCTGAATGTAACGGGATGTGTACACACTATTTCTGAACTGGTTAGTACTAAACAGCCTAAATGCAGCTATTTTCAGAGTAAATCCCTGCCCTTCTATAACCCATTCTAATTACAGACATATTTTCTGTATTAGTCATGCAAGGCATTTACAATGTACTGCAAGAATCTATCAAGGTTAAAGTAAGAGGTGGTCTGGTTTGCTGCAGTGGTTCTAAGGAGAGAGGAAACAACTGTGGTTCTAAGGAGAGAACTGTGGTTCtaaggagagaggagacaacgGTGGCTCtaaggagagaggagacaacgGTGGTTCtaaggagagaggagacaatGGTGGTTCTAAGGTGAGAGGAGACAACGGTGGTTCtaaggagagaggagacaacgGTGGTTCtaaggagagaggagacaacacCTAGGGGTAATGCCGCAGTACTGGAGGGTATATGGCACTGTGTGGATGAAAAGTGAGCAGCATAGTTCTCCTGAAGCCTCCTTCCGGTTTCTGTGTCCCGCATGTCCTTCTGAGGGCTTCtcacactactgagccaaacCAAGCCAGCCCAGTTCAGTTCGGGTTGTCCTGACAGTGTGAAACCGGTACAGGTGATCTGACTCTCAAATCGTACAGTTGATTGGTGACTCCTGTCTTTTAGCCCTGGGCTGTGTTCACTGGGCACGAAGAGGAAGAAATGAGCTCATTTTCATTGTCCGTTGCACAACCATTTTTAAACGTTTTGCTCCGGTGTGCCCTAATAAACACGACCTAGGTCTACGGTGAcatctcctcccatctgtcctcCTATTCCTGGTCTGTGAGGTAGAAGCCCAGCTTGGCCACAGTCATCTCCCTCCGTAGACGTGTCACCTCCCA
>TU2509878
actgaAGTACCTGAATGTAACGGGATGTGTACACACTATTTCTGAACTGGTTAGTACTAAACAGCCTAAATGCAGCTATTTTCAGAGTAAATCCCTGCCCTTCTATAACCCATTCTAATTACAGACATATTTTCTGTATTAGTCATGCAAGGCATTTACAATGTACTGCAAGAATCTATCAAGGTTAAAGTAAGAGGTGGTCTGGTTTGCTGCAGTGGTTCTAAGGTGAGAGGAGACAACGGTGGTTCtaaggagagaggagacaacgGTGGTTCtaaggagagaggagacaacacCTAGGGGTAATGCCGCAGTACTGGAGGGTATATGGCACTGTGTGGATGAAAAGTGAGCAGCATAGTTCTCCTGAAGCCTCCTTCCGGTTTCTGTGTCCCGCATGTCCTTCTGAGGGCTTCtcacactactgagccaaacCAAGCCAGCCCAGTTCAGTTCGGGTTGTCCTGACAGTGTGAAACCGGTACAGGTGATCTGACTCTCAAATCGTACAGTTGATTGGTGACTCCTGTCTTTTAGCCCTGGGCTGTGTTCACTGGGCACGAAGAGGAAGAAATGAGCTCATTTTCATTGTCCGTTGCACAACCATTTTTAAACGTTTTGCTCCGGTGTGCCCTAATAAACACGACCTAGGTCTACGGTGAcatctcctcccatctgtcctcCTATTCCTGGTCTGTGAGGTAGAAGCCCAGCTTGGCCACAGTCATCTCCCTCCGTAGACGTGTCACCTCCCA
>TU2509879
actgaAGTACCTGAATGTAACGGGATGTGTACACACTATTTCTGAACTGGTTAGTACTAAACAGCCTAAATGCAGCTATTTTCAGAGTAAATCCCTGCCCTTCTATAACCCATTCTAATTACAGACATATTTTCTGTATTAGTCATGCAAGGCATTTACAATGTACTGCAAGAATCTATCAAGGTTAAAGTAAGAGGTGGTCTGGTTTGCTGCAGTGGTTCTAAGGTGAGAGGAGACAACGGTGGTTCTAAGGAGAGAGGAAACAACTGTGGTTCTAAGGAGAGAACTGTGGTTCtaaggagagaggagacaacgGTGGCTCtaaggagagaggagacaacgGTGGTTCtaaggagagaggagacaatGGTGGTTCTAAGGTGAGAGGAGACAACGGTGGTTCtaaggagagaggagacaacgGTGGTTCtaaggagagaggagacaacacCTAGGGGTAATGCCGCAGTACTGGAGGGTATATGGCACTGTGTGGATGAAAAGTGAGCAGCATAGTTCTCCTGAAGCCTCCTTCCGGTTTCTGTGTCCCGCATGTCCTTCTGAGGGCTTCtcacactactgagccaaacCAAGCCAGCCCAGTTCAGTTCGGGTTGTCCTGACAGTGTGAAACCGGTACAGGTGATCTGACTCTCAAATCGTACAGTTGATTGGTGACTCCTGTCTTTTAGCCCTGGGCTGTGTTCACTGGGCACGAAGAGGAAGAAATGAGCTCATTTTCATTGTCCGTTGCACAACCATTTTTAAACGTTTTGCTCCGGTGTGCCCTAATAAACACGACCTAGGTCTACGGTGAcatctcctcccatctgtcctcCTATTCCTGGTCTGTGAGGTAGAAGCCCAGCTTGGCCACAGTCATCTCCCTCCGTAGACGTGTCACCTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2509876 False 883 lncRNA 0.48 2 5032543 5033475
TU2509878 False 755 lncRNA 0.48 2 5032543 5033475
TU2509879 True 910 lncRNA 0.48 2 5032543 5033475

Neighbor

gene id symbol gene type direction distance location
pidd1 pidd1 coding downstream 187221 4801210 ~ 4845322 (-)
LOC110521172 LOC106584780 coding downstream 242294 4735169 ~ 4790249 (-)
LOC118945761 NA coding downstream 313889 4717985 ~ 4718654 (-)
fads2 d6fad_b coding downstream 769261 4238239 ~ 4263282 (-)
LOC110522693 d6fadc coding downstream 833246 4175699 ~ 4199297 (-)
epx LOC106584777 coding upstream 5742 5039217 ~ 5067190 (-)
hps5 hps5 coding upstream 38473 5071948 ~ 5122084 (-)
gtf2h1 LOC106584761 coding upstream 90026 5123501 ~ 5144889 (-)
muc2.1 LOC106593352 coding upstream 117145 5150620 ~ 5187550 (-)
kcnc1b LOC106584763 coding upstream 310465 5343940 ~ 5415904 (-)
G2193933 NA non-coding downstream 32253 4999804 ~ 5000290 (-)
G2193910 NA non-coding downstream 66375 4965935 ~ 4966168 (-)
G2193907 NA non-coding downstream 73814 4958484 ~ 4958729 (-)
G2193904 NA non-coding downstream 77604 4954737 ~ 4954939 (-)
G2193901 NA non-coding downstream 81717 4948004 ~ 4950826 (-)
G2193969 NA non-coding upstream 67249 5100724 ~ 5102708 (-)
G2193970 NA non-coding upstream 69260 5102735 ~ 5103307 (-)
G2193978 NA non-coding upstream 96774 5130249 ~ 5130713 (-)
G2193988 NA non-coding upstream 157617 5191092 ~ 5191733 (-)
G2193850 NA other downstream 238320 4793377 ~ 4795447 (-)
G2193810 NA other downstream 299682 4731727 ~ 4732861 (-)
G2193451 NA other downstream 347577 4681737 ~ 4684966 (-)
G2193421 NA other downstream 421076 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 769344 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 797826 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 1175387 6206342 ~ 6221642 (-)
G2194918 NA other upstream 1192871 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1601855 6635330 ~ 6635951 (-)
G2195750 NA other upstream 2213259 7225447 ~ 7270413 (-)

Expression


Co-expression Network