G2193999


Basic Information

Item Value
gene id G2193999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5215736 ~ 5217519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2509930
ctgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTGTCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTGTCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTGTCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTGTCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTGTCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTATGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTATGTTCTAGTTCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCATCACTGTAATACTGATACATTGCGGTGTGATCTGGTTAAAGGCTGACCGTGAGGGCAGAAGCAGCCGTCCATCAGGTGTTCTTCACACAGTGAGCTGGTGTCTGAGTGGGTACAGGTATCCATGCAGGGAGAGCCACTCTCCAGAT
>TU2509932
TGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCATCACTATTATACTGATACATTGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTATGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTATGTTCTAGTTCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTACCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCATCACTGTAATACTGATACATTGCGGTGTGATCTGGTTAAAGGCTGACCGTGAGGGCAGAAGCAGCCGTCCATCAGGTGTTCTTCACACAGTGAGCTGGTGTCTGAGTGGGTACAGGTATCCATGCAGGGAGAGCCACTCTCCAGAT
>TU2509931
TGTTCTAGATCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCATCACTATTATACTGATACATTGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTATGTTCTAGATCTCTATCatcactgttatactgatacattgaggtgtgttctagtTCTCTATCatcactgttatactgatacattGAGGTGTGTTCTAGATCTCT

Function

NR:

description
PREDICTED: adhesive plaque matrix protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2509930 False 1358 lncRNA 0.38 3 5215736 5217183
TU2509932 False 749 lncRNA 0.39 4 5215736 5217519
TU2509931 True 374 lncRNA 0.35 3 5216156 5217519

Neighbor

gene id symbol gene type direction distance location
muc2.1 LOC106593352 coding downstream 28186 5150620 ~ 5187550 (-)
gtf2h1 LOC106584761 coding downstream 70847 5123501 ~ 5144889 (-)
hps5 hps5 coding downstream 93652 5071948 ~ 5122084 (-)
epx LOC106584777 coding downstream 148546 5039217 ~ 5067190 (-)
pidd1 pidd1 coding downstream 370414 4801210 ~ 4845322 (-)
kcnc1b LOC106584763 coding upstream 126421 5343940 ~ 5415904 (-)
LOC118945784 NA coding upstream 130447 5347966 ~ 5350211 (-)
LOC110521187 LOC106584768 coding upstream 340862 5557683 ~ 5599839 (-)
fancf fancf coding upstream 545321 5762840 ~ 5764816 (-)
LOC110521193 NA coding upstream 598219 5815738 ~ 5818923 (-)
G2193989 NA non-coding downstream 20506 5193308 ~ 5195230 (-)
G2193988 NA non-coding downstream 24003 5191092 ~ 5191733 (-)
G2193978 NA non-coding downstream 85023 5130249 ~ 5130713 (-)
G2193970 NA non-coding downstream 112429 5102735 ~ 5103307 (-)
G2193969 NA non-coding downstream 113028 5100724 ~ 5102708 (-)
G2193836 NA non-coding upstream 12357 5229876 ~ 5236009 (-)
G2193834 LOC106597596 non-coding upstream 26572 5244091 ~ 5246294 (-)
G2194012 saal1 non-coding upstream 34270 5251789 ~ 5252979 (-)
G2194015 NA non-coding upstream 37588 5255107 ~ 5257588 (-)
G2194020 NA non-coding upstream 44569 5262088 ~ 5266585 (-)
G2193850 NA other downstream 421513 4793377 ~ 4795447 (-)
G2193810 NA other downstream 482875 4731727 ~ 4732861 (-)
G2193451 NA other downstream 530770 4681737 ~ 4684966 (-)
G2193421 NA other downstream 604269 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 952537 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 613782 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 991343 6206342 ~ 6221642 (-)
G2194918 NA other upstream 1008827 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1417811 6635330 ~ 6635951 (-)
G2195750 NA other upstream 2029215 7225447 ~ 7270413 (-)

Expression


Co-expression Network