G2195007


Basic Information

Item Value
gene id G2195007
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 6374490 ~ 6505327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2511300
gcagagacaataagtAGACACACTGGCAAAcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggacacacacacacacacacacacacacacaca
>TU2511292
cctggacatcctgacgggccgcccccaggtgggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtggggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcctccctccctccctccctccctcc
>TU2511297
atatctgtgggcagaactgaaaatgtgtgtgcgagcaaggaggtctacaaacctgactcagttacaccagctttgtaaggaggaatgggccaaaattcaaccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaaattaaacaatttaaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtggggggtattctgccacggtgtactctctgttttgggccaagtagcgcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggacaaataagaatttgttcttaactgacttgcctag
>TU2511291
atatctgtgggcagaactgaaaatgtgtgtgcgagcaaggaggtctacaaacctgactcagttacaccagctttgtaaggaggaatgggccaaaattcaaccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaaattaaacaatttaaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggaCTTGTTTTtgcccttttaaaaaaaaatcaaataaaaaagacagcaat
>TU2511304
atatctgtgggcagaactgaaaatgtgtgtgcgagcaaggaggtctacaaacctgactcagttacaccagctttgtaaggaggaatgggccaaaattcaaccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaaattaaacaatttaaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggcattaaggatctctctgtacttt
>TU2511303
atatctgtgggcagaactgaaaatgtgtgtgcgagcaaggaggtctacaaacctgactcagttacaccagctttgtaaggaggaatgggccaaaattcaaccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaaattaaacaatttaaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggattcagaccccttgactttttacacattttgttacattacagccttattctaaaattgattgaattgttttttcccccctcatcaatctacacacaacaccccataatgacatcacaataccccatagtgacatcacaatgccccatagtgacaaagcaaaaacagttttttaaatgtttttaaatgtattagaaataaaaatatgaaataggacatttacataagtagattaaagcacctttggcagcgattacagcctcgagtcttcttgggtatgatgctacaagcttggcacacatgtattttaggagtttctcccattcttctcggcAAATcttctgaagctctgtcaggttggatggggagcatcactgcacagctattttcaggtctctccagagatatccgatcatgttcaagtccgggctttttgctgggccactcgaggatattcagagacttgtcctgaagccactcctgcgttgtcttggctgtgtggttagcgtctttgtcctgttggaaggtgaaccttcgccccagtctgaggtcctgagcgctctggagcaggttttcatcaaggatctctctctactttgctctgttcatctttccctccatcctaactagtctcccagtacctgccactgaaaaacatccccacagcatgatgctgccaccaccttgcttcaccgtagggatggttccaggtttcctccagatgtgacacttggcattcagaccaaagtgttcaatcttggtttcatcagaccagagaatcttgtttttcatggtctgagagtcctttaggtgccttttggcaaactccaagcaggctgtcatgtgccttttactgaggagtagcttccatctggctactctaccataaaggcctgattggtggagtgctgcagagatggttgtccttctggaaggttctcccatctccacagaggaactctggaaagTATTGTAGGTTATACTCAGTGGGTTCTGTAGAATgtacagttggaagtttacatacacctcagccaaatacatctaaactcagtttttcacaattcctgaatgtgaaatgtcagaacaatagttgagagaattatttatttcagcttttatttatttcatcacattcctagtgggtcagaagtttaaatacactcaattagtatttgatatcattgcctttaaattgtttaacttgggtcaaatgtttcgggttgccttccagaagcttcccgcaataagttgggtgaattttggcccattcctccttacagagctggtataactgagtcaggtttgtaagcctccttgctcgcacacgctttttcagttctgcccacaaattttctataggattgaggtcagggctttgtgatggccacgccaataccttgactttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccattggcgaccaagcttgaactttctgactgatgtcttgagatgttgcttcaatatagccacatcattttcctgcctcatgatgccatctattttatgaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgctgccacccccgtgcttcatggttgggatggtgttcttcggcttgcaagcgttcccctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagactagtggacatttctccaaaaagtatgatctttgtccccatgtgcagttgcaaatcgtagtctggcttttttatggtggttttggagcagttgcttcttccttactgagcggcctttcaggttatatcgatataggactcgttttactgtggatatagatacttttgtacccgtttcctccagcatctttacaaggtcctttgctgttgttctgggattgatttgcactttcgcaccaatgtacattcatctccaggagacagaacacgtctccttcctgagcggtgtgacggcttcgtggtcccatgttgtttatacttgcgtactattgtttgtacagatgaacgtagtaccttcaggtatttggaaGGATgcaacagacttgtggaggtctacaatgtttttctggggtcttagctgatttctttagattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaatagactaaaatgatgtaaattagcctatcagaatcttctaaagccattgtctggaatttccaagctgtttaaaggcacaatcaacttagtgtatgtaaacttctgacccactggaattgtgagacagtgaattataagtgaaataatctgtctgtggaaaaatgacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaattatattttgttaacaagaaatttgcggagtgattgaaaaattagttttaatgattccaacctaagtgtatgtaaacttccgacttcaactgtatatacttgaaaatgtatcaattgaccaattcggcacatttgggcaaactcctggcagacttgaCACAAAATACTGTGCAGTGTTGTAATTATttactggatcagtctgaaactttgcacacacccTGTTGGCCAAAACCTAAATTACACTTAGACTCCTATCTGAatgtatggcctttctcttgcatttcaaagatgaagggaaatatat
>TU2511301
atatctgtgggcagaactgaaaatgtgtgtgcgagcaaggaggtctacaaacctgactcagttacaccagctttgtaaggaggaatgggccaaaattcaaccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaaattaaacaatttaaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggctgaactcaatttcgagtctcatagcaaag
>TU2511290
GCTCGTTGGActggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgattTCACTGTGAAAGAAAGCTGATGCTTTGACATGTAGAGATAATTACCTTATTTACAATTTGGTGATTGTTTTTTTA
>TU2511294
aaggacatccctggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtggggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgattTCACTGTGAAAGAAAGCTGATGCTTTGACATGTAGAGATAATTACCTTATTTACAATTTGGTGATTGTTTTTTTA
>TU2511295
gggttgtatttacaatggtgtttgttcttcactggttgctctggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgattTCACTGTGAAAGAAAGCTGATGCTTTGACATGTAGAGATAATTACCTTATTTACAATTTGGTGATTGTTTTTTTA
>TU2511296
AGGAAGCTTCttacctggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtggggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgattTCACTGTGAAAGAAAGCTGATGCTTTGACATGTAGAGATAATTACCTTATTTACAATTTGGTGATTGTTTTTTTA
>TU2511299
ACCTCcttcatcaagtttgctgacgacacaacaattgtaagcctgataaccaacaacaacgagccagcctatagggaggaggtaagtgaactggtgccacgacaacaacctctccctcaatgtcagcaaaacaaaggagttaaTTGTTGACTTCAAGAAGCGGAGGAGGGAACATGCCCCGATCTGGCAACAacgggactgcagtagagagtCAAAGAGTTTTCATTACCTTGGCTGTCAGAGTCACAAGTTTTaaattccttggcgtccacatcactgaGGAACTTCTCaatggtggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtggggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgattTCACTGTGAAAGAAAGCTGATGCTTTGACATGTAGAGATAATTACCTTATTTACAATTTGGTGATTGTTTTTTTA
>TU2511302
gacaaattagctgatcgtggactacaggaaaagtaggGCAGATCACGcctccattcacatcgacagggctgcagtggagcgggtcgagagtttgaagttccttggtgtccacatcaccaacaaactatcatggtccaaacacaccaagacagttgtggagagggcacaacaacacctattccccctccggaaaaatatttggcatgggtcctcagatcctcaaaaggttctacagctggcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactaaattaaaaaatgttcagacccctcaagggagacaccgtgatcaagaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgattTCACTGTGAAAGTAAACCCTCTGGTGCGACTCATTCATTCATCCTTTTTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2511300 False 439 lncRNA 0.53 5 6374490 6449389
TU2511292 False 443 lncRNA 0.57 5 6384688 6453070
TU2511297 False 500 lncRNA 0.49 5 6407979 6467272
TU2511291 False 341 lncRNA 0.45 3 6415687 6467272
TU2511304 False 316 lncRNA 0.47 3 6421819 6467272
TU2511303 False 3041 lncRNA 0.43 3 6425567 6467272
TU2511301 False 323 lncRNA 0.47 3 6432461 6467272
TU2511290 False 488 lncRNA 0.51 4 6436437 6505327
TU2511294 False 489 lncRNA 0.51 4 6436437 6460010
TU2511295 False 274 lncRNA 0.46 2 6436437 6438332
TU2511296 False 493 lncRNA 0.51 4 6436437 6500291
TU2511299 False 773 lncRNA 0.49 4 6436437 6450607
TU2511302 True 602 lncRNA 0.50 4 6439620 6452674

Neighbor

gene id symbol gene type direction distance location
LOC110521207 LOC106584737 coding downstream 51430 6297233 ~ 6323060 (-)
LOC110521206 LOC106584738 coding downstream 89180 6239621 ~ 6285310 (-)
LOC110522708 LOC106584740 coding downstream 137780 6229423 ~ 6236710 (-)
LOC110522707 myo5c coding downstream 152848 6206342 ~ 6221642 (-)
gnb5a LOC106584742 coding downstream 169852 6197425 ~ 6204638 (-)
LOC110521217 LOC106584699 coding upstream 23933 6529260 ~ 6535620 (-)
zgc:101540 slc27a2 coding upstream 294562 6799889 ~ 6820213 (-)
LOC110521221 LOC106584724 coding upstream 318425 6823752 ~ 6862050 (-)
LOC110521222 LOC106584722 coding upstream 356954 6862281 ~ 6871384 (-)
LOC110521226 parp16 coding upstream 442418 6947745 ~ 6954514 (-)
G2195001 NA non-coding downstream 6296 6367681 ~ 6368194 (-)
G2194918 NA non-coding downstream 79979 6226346 ~ 6294511 (-)
G2194956 NA non-coding downstream 105781 6267777 ~ 6268709 (-)
G2194955 NA non-coding downstream 113715 6259201 ~ 6260775 (-)
G2194941 NA non-coding downstream 150828 6223419 ~ 6223662 (-)
G2195056 NA non-coding upstream 257 6505584 ~ 6506314 (-)
G2195077 NA non-coding upstream 36884 6542211 ~ 6542852 (-)
G2195084 NA non-coding upstream 46939 6552266 ~ 6552775 (-)
G2195087 NA non-coding upstream 50183 6555510 ~ 6556228 (-)
G2195110 NA non-coding upstream 86014 6591341 ~ 6591581 (-)
LOC110521194 svip other downstream 538228 5825537 ~ 5836399 (-)
G2193850 NA other downstream 1580267 4793377 ~ 4795447 (-)
G2193810 NA other downstream 1641629 4731727 ~ 4732861 (-)
G2195405 NA other upstream 130003 6635330 ~ 6635951 (-)
G2195750 NA other upstream 741407 7225447 ~ 7270413 (-)
G2195796 NA other upstream 779866 7285193 ~ 7285671 (-)
G2196731 LOC106584678 other upstream 1587374 8092701 ~ 8093996 (-)
G2196733 LOC106596922 other upstream 1594344 8099671 ~ 8107053 (-)

Expression

G2195007 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10000.
End of interactive chart.

G2195007 Expression in each Bioproject

Bar chart with 21 bars.
G2195007 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75000.
End of interactive chart.

Co-expression Network