G2198501 (LOC106584592)



Basic Information


Item Value
gene id G2198501
gene name LOC106584592
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10602875 ~ 10626661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2515576
tttgtgtgtgcatgagtgtgtgtgtgtgtgtgtgtgtgtgtttttgtgtgcatgagtgtgtggtTGTATGTGTTTCATAAATACCATACAACAAAAACTGAGATTAACAAAGGAAAGGAAAAAGTCCACAAAACATTCTATTATTTCTCATTACCAGAATGAACCGATCAAATAAATTACAACCAGAActgagattttttgttgttgattaaaAGTCCATTAAAATCgctatatatatattcatatagtatatatagtatttgtctgtctgtcgccAGCCACCCTGGAGCATGCTCTGAGAGGCTGGGGTGGAGTATACTTGGGGGGTGTGGAGTGAGACATGCGAGTACTGaactccactacagagagggcaTAACTTAGACctaactcctctcctccccaccgcCCCAACAGTCACGTCACACTGTTAAACACTGGAAACAAGGAAGCAGACGAGTATTGCGGGAAAATACAATGCCAGTCTTTATCAGTCACTGTGAGTCCTCTTAAACTGCAAAGTCTTTGTAAACCATGTTGGGCTGACACGCCAACATGGAGGATTCGTCATTGTTTTGATGCAGTACCACCGGTATAGTCTCTTAGGACAGTCTGAATagtctctctctgcattgtgCTGTGGTGCATTTCTGGGGTACAGAGCTCTTTCTAAGTCTTTGTAATGAAAGGAGGGGCAGACTGAGACATGCTGGGGGTTGTGGTTCTCTGGGGCTGAAGTCTTTGAAATGAAGGGAGGGGCAGACTGAGGCATGCTGGGGATTGAAGTCTTTGGGAGGAAAGCACTTGGCtatgtctcaaatgacacccaaTTATGAAAATAGCACTATACTTTTGCCGacttttggtcaaaagtagtgcactatatgggtgATAGGGTGTTTGAGATTTGCCCATGGATCTGTTCTTCTTGAACTGACACCACACAGAGGAAATAGTTCACAGTTCATAGTTCAGTGTCAGTGACCTATAGTCTCCGTCTTTTCCCGTAGTTGTTCTCTTCAGAGCTTTGGTTGGTAGAACTGTAAATGTAACCTAGGAAATCAACAGCCTGCTGAACCCCATGTCTAGTCCAGGAACACTAGCTAGATAAGGGACTCCCGGAATCTCTCTGGAGTCTTTAACACGGTCTGTTTGGGGAGCGTAAATTTCCCCCcgctgtcctccctcctccttcaggtCCGTTTCTCCTCCTCCCTGGGTGGGCCGGTTGTGGTCAGGAGTGCGGTTAGTCAGGACACCTCGATGATCTCCATGCTGCCAGAGAAGCTGGACTGCTTCCCCATCTTCTCCAGCTCCTCCCGGGAACGCGTATCTGAGATGCCCTCCTCAAACTCCATCTGACAGCTGCGCCGCTTGAACTGCTTCTCGGTGCTGTTGGAGGCCGTCCCGTTGGCGACGGTCGTTGAGGAGTCCCTCTGTAATGGCGCTGATGACGATGATGCCCTTTTGTCCCGCTGCACTTTCTCCCGTAGCCGCACCCCCTCGCTACAACCGAACGCCACGTATGCAGAGCTGCTTCCGAATCGCacttCCAGGGGGCGTCGGCAGTGGGGGTGACAGGTGTGACTGGGGTGGTGGCCtggactgtgtctctgtgtttggtCCACATGGTTCCGGACTCtttggggggcagagagagaagcatGGAGCCCTTCAGGCTCTCGTCTAGGCTGGGGCTCTTGTGAACGGGCAGGGAGCGTCCCAGAGTCAGACTCAGGGACTGGGGGTGTACCGGGGAACTGGTTGTGGATCCAGATCCAGGGCTGTGCTTGGCTTTCCTCCTGGGCCTGGACGATGATGGACCTCCATAACGAACGCCCCCCTCACTGGGACCCCCAACGTCGAGACCTCCGATGCTGCCGCCGCACCCCGGGGAAGGGAAGGGCGACTCAGCCGAGCTGGGGCTGTCTGGGACAGGGGAGAACTGAGGGCAGACACCATTGACAGGGGGACTGTCCAGCTTACATAGCTTGGGCACGTCTTCGGAGTGTGTGGGCGCTGCCAGGCGCAGGCAGTGGGGGCTGCTGGGGGAGTAGACAGACTTGATGTCCAGGGAGAAGGATCGCTTCAGCCGGTTAGTGTCCAGGATGCGCTCGGCCGACAGGTGGAGGCCGTTGAAGCCCTGCTGGAGAGAAGTCGGCGAGGGGAGCTTCGGTTCTGGTGGGGCCTGGGGCTCTATTGATGAAGAGTCATGGTGACCATTGACTTCTGACCCTGAGCTGAACCCGTTGACATCTGAGCCCTGGGATTGACCTTTGCCCTCTGAGGTCTTGTCGTCTGACAGCGCCTGGAGGAGCCGCAGCCCCTTCTCAAACTCCAGGAGCTGCCCCAGGAAGTTGAAGTTGGGCGATATTGAAGGCCGTCGGTCCTTC

Function


NR:

description
dual specificity protein phosphatase 8-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2515576 True 2390 lncRNA 0.53 5 10602875 10626661

Neighbor


gene id symbol gene type direction distance location
LOC110521301 LOC106584589 coding upstream 127312 10471852 ~ 10475563 (+)
LOC110522733 LOC106584588 coding upstream 144219 10322109 ~ 10458656 (+)
LOC110521300 LOC106584586 coding upstream 289818 10281372 ~ 10313057 (+)
LOC118945815 NA coding upstream 297422 10298713 ~ 10305453 (+)
LOC110521299 LOC106584584 coding upstream 337752 10260220 ~ 10265123 (+)
LOC110521306 LOC106584595 coding downstream 173095 10799756 ~ 10920504 (+)
LOC110521307 LOC106584597 coding downstream 294627 10921288 ~ 10922316 (+)
LOC110521310 gramd4 coding downstream 443243 11069904 ~ 11122397 (+)
LOC110521313 cerk coding downstream 575022 11201683 ~ 11226086 (+)
LOC118945803 LOC106584602 coding downstream 621795 11248456 ~ 11253726 (+)
G2198499 NA non-coding upstream 37027 10565603 ~ 10565848 (+)
G2198458 NA non-coding upstream 87201 10514341 ~ 10515674 (+)
G2198422 mob2 non-coding upstream 123712 10477355 ~ 10479163 (+)
G2198363 NA non-coding upstream 239517 10311261 ~ 10363358 (+)
G2198583 NA non-coding downstream 84382 10711043 ~ 10712247 (+)
G2198598 LOC106584593 non-coding downstream 109351 10736012 ~ 10737252 (+)
G2198626 NA non-coding downstream 150445 10777106 ~ 10777309 (+)
G2198650 NA non-coding downstream 221886 10848547 ~ 10858751 (+)
G2198247 NA other upstream 378758 10221650 ~ 10224117 (+)
G2197955 NA other upstream 982588 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 1153222 9418139 ~ 9449834 (+)
G2197055 LOC106584658 other upstream 2007367 8593374 ~ 8595508 (+)
LOC110522717 LOC106584678 other upstream 2510066 7818281 ~ 8094067 (+)
G2198837 NA other downstream 517552 11144213 ~ 11144672 (+)
LOC110521323 LOC106561036 other downstream 1109813 11683849 ~ 11796935 (+)
G2202196 NA other downstream 2574477 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 2665575 13292190 ~ 13301806 (+)

Expression



Co-expression Network