Gene
RNA
| Item | Value |
|---|---|
| gene id | G2198598 |
| gene name | LOC106584593 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 10736012 ~ 10737252 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tyrosine-protein phosphatase non-receptor type 5-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2515674 | True | 1090 | lncRNA | 0.46 | 3 | 10736012 | 10737252 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110521301 | LOC106584589 | coding | upstream | 260449 | 10471852 ~ 10475563 (+) |
| LOC110522733 | LOC106584588 | coding | upstream | 277356 | 10322109 ~ 10458656 (+) |
| LOC110521300 | LOC106584586 | coding | upstream | 422955 | 10281372 ~ 10313057 (+) |
| LOC118945815 | NA | coding | upstream | 430559 | 10298713 ~ 10305453 (+) |
| LOC110521299 | LOC106584584 | coding | upstream | 470889 | 10260220 ~ 10265123 (+) |
| LOC110521306 | LOC106584595 | coding | downstream | 62504 | 10799756 ~ 10920504 (+) |
| LOC110521307 | LOC106584597 | coding | downstream | 184036 | 10921288 ~ 10922316 (+) |
| LOC110521310 | gramd4 | coding | downstream | 332652 | 11069904 ~ 11122397 (+) |
| LOC110521313 | cerk | coding | downstream | 464431 | 11201683 ~ 11226086 (+) |
| LOC118945803 | LOC106584602 | coding | downstream | 511204 | 11248456 ~ 11253726 (+) |
| G2198583 | NA | non-coding | upstream | 23765 | 10711043 ~ 10712247 (+) |
| G2198501 | LOC106584592 | non-coding | upstream | 109351 | 10602875 ~ 10626661 (+) |
| G2198499 | NA | non-coding | upstream | 170164 | 10565603 ~ 10565848 (+) |
| G2198458 | NA | non-coding | upstream | 220338 | 10514341 ~ 10515674 (+) |
| G2198422 | mob2 | non-coding | upstream | 256849 | 10477355 ~ 10479163 (+) |
| G2198626 | NA | non-coding | downstream | 39854 | 10777106 ~ 10777309 (+) |
| G2198650 | NA | non-coding | downstream | 111295 | 10848547 ~ 10858751 (+) |
| G2198687 | NA | non-coding | downstream | 195081 | 10932333 ~ 10932563 (+) |
| G2198688 | NA | non-coding | downstream | 195744 | 10932996 ~ 10933327 (+) |
| G2198247 | NA | other | upstream | 511895 | 10221650 ~ 10224117 (+) |
| G2197955 | NA | other | upstream | 1115725 | 9619867 ~ 9620287 (+) |
| calcb | LOC100135819 | other | upstream | 1286359 | 9418139 ~ 9449834 (+) |
| G2197055 | LOC106584658 | other | upstream | 2140504 | 8593374 ~ 8595508 (+) |
| LOC110522717 | LOC106584678 | other | upstream | 2643203 | 7818281 ~ 8094067 (+) |
| G2198837 | NA | other | downstream | 406961 | 11144213 ~ 11144672 (+) |
| LOC110521323 | LOC106561036 | other | downstream | 999222 | 11683849 ~ 11796935 (+) |
| G2202196 | NA | other | downstream | 2463886 | 13201138 ~ 13201491 (+) |
| LOC110521355 | LOC106584515 | other | downstream | 2554984 | 13292190 ~ 13301806 (+) |
