G2199577 (LOC106584595)


Basic Information

Item Value
gene id G2199577
gene name LOC106584595
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10887022 ~ 10894777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2516766
tagCTTCTTCGCAAATAGAGCAATTTGTCAAGCAGGAAATTAGCTGGGACTGTCTAGTAGAGGTCTGAGTGGGGCTGGGGAAAACTttaaactagctgttattggcagagaggtttgaaactgTTTCTATTTGAAATGTATCGCAGGGTGATGTCACAGGGCAGGCCAAAACTCCGTCCCACCAAAACAGATTGAAATGTCAGGCGTTTTCTTTCAAACAGCTCCTACATTAAAAGGGAATTAACATAATCTTCAGCATTTCAGAATGTTATTCCAACATCACAGTGTAGAAAAATACAATACACAGGAAAATCACGTGACTACACTGAGCCTTTAACGGCCACAATATCCACTGCCCAGAGGTATGGATCAGCCTCTAATATCCACTGCCCAGAGGTATGGATCAGACTCTAATATCCACTACCCAGAGGGATGGATCAGCCTCTAATATCCACTACCCAGAGGGATGGATCAGCCTCTAATATCCACTACCCAGAGGTATGGATCAGCCTCTAGACATGAAAAATGTCCGTTAAGACCAAGAGTTCTACAACTCAAAAATATCAGATACAGAACGTTGCATAAAGCAGTTAAGAAATAGAGTCCAGACAATTTAAACTTCATCTTACTTGTAAAGAGTGAAACACTGATATTTTTGCCTTCAGTCATCTCATCTCCAGCCACTGCAGTGACCCTGAATGTGTACTTCACTCCAGCAGTCAGCTCAGTTACGTTCAAAGCTGTCTCATTGGTAGTTGTATTCATGTCTCTACTGCCACCAGTCCATTCTACTCTATAGAAGGATCTGTTTCCCAATGGTTCAATCCAGCTTAGAGACACAGATGATGTTGTGATTTCAGAGACACTAAGGTTCCTGATGACTTCAGGTTCTGTGCATGCAAGAAATGTACATTTTGGGAGAAGAACACACCATTGGATTACCTAGTATCTACCTACAGTACTCTATCCCAGGATTTCAACACTTTTGATTCCAAAAAAGAAAGAGGACCTTACCCTTCCTCTTATTACCCTATCATTGTTAAATACAGATATTAACATAATCATTACATGGTTCCACTTCAGAGAAAATATTAAGACCATTCCAATGAAAAGGCTTACTTGTAAAGAGTGCTTTCTCCTGAGCTTTTCCTTCAGTTATATTATCACCAGCCACTGCAGTGACCCTGAATGTGTATTTCACTCCAGCAGTCAGCTCAGTTACATTAAAGGCTGTCACATTGGTAGTTGTATTCATATCTCTACTGCCATTAGTCCATTCTACTCTATAGAAGGAGCTGTTTCCCAATGGTTCAATCCAGCTCAGAGACACAGATGATGTTGTGATTTCAGTGACAGTCAGGTTCCTGATGACTGCAGGCTCTGTGCGTGCAAGAAAGTTATATTTTGGGAAAAGATCACCAGAATCATTATTATTCATGGTAATCACCATACAGTCTATATATATGACCAGAAGCATGCTAATTCTACATACATTTAAGGTCAATATGTAGGACACAAAAATGGTACctctaaaaacacatttaaagATAGTAAGCATTATCAATGACATGAAACGTTTTGGggacaaaaaaaatagttttcaATAAAGGACAAGCACTTAATCATACTATCCAAGCCCAATTTTGCAGTTGATTGCAGATAAACACATTTCCTAAATATTCTGGATCAGTTGGAGTCTACACTCCCTTCAATAGAGAGAATTATGTGAACCAAAACAACAGTGACTGACAGATATACTGGTTAAACATGATGAGTAATCCTTCAGTAGTCTTATCAGCAGCGACTGCAGCAACTATGAGTCTGTACTGCACTCCAGCAGTCAGCTCAGTTACATTAAAGGCTGTCTCAATGGTAGTTCAATTCATATCTCTACTGCCATCAGTCCACTCTACTCTATAGAAGGAGCTGTTTCCCAATGGTTCAATCCAGCTCAGAGACACAG

Function

NR:

description
receptor-type tyrosine-protein phosphatase eta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2516766 True 1963 lncRNA 0.40 2 10887022 10894777

Neighbor

gene id symbol gene type direction distance location
LOC110521305 LOC106584593 coding downstream 118385 10731413 ~ 10768637 (-)
LOC110521303 LOC106584592 coding downstream 157618 10622559 ~ 10729404 (-)
LOC110521302 LOC106584590 coding downstream 291582 10477352 ~ 10595440 (-)
ccdc77 ccdc77 coding downstream 606007 10271569 ~ 10281015 (-)
hdhd5 LOC100380646 coding downstream 615664 10265335 ~ 10271358 (-)
LOC110522734 celsr1 coding upstream 27564 10918587 ~ 11012095 (-)
gtse1 gtse1 coding upstream 121293 11016070 ~ 11020933 (-)
atp2b1b LOC106584599 coding upstream 127027 11021804 ~ 11070857 (-)
LOC110522735 LOC106584602 coding upstream 293849 11188626 ~ 11196163 (-)
LOC110522736 LOC106584602 coding upstream 301480 11196257 ~ 11198563 (-)
G2199561 NA non-coding downstream 21661 10859362 ~ 10865361 (-)
G2199558 NA non-coding downstream 34933 10846153 ~ 10852089 (-)
G2199554 NA non-coding downstream 38219 10844047 ~ 10848803 (-)
G2199556 LOC106584595 non-coding downstream 38973 10843453 ~ 10848049 (-)
G2199518 NA non-coding downstream 99294 10786937 ~ 10787728 (-)
G2199568 NA non-coding upstream 12882 10907659 ~ 10908817 (-)
G2199601 NA non-coding upstream 59007 10953784 ~ 10954044 (-)
G2199603 NA non-coding upstream 62492 10957269 ~ 10959530 (-)
G2199689 NA non-coding upstream 230825 11125602 ~ 11125808 (-)
G2199704 NA non-coding upstream 249588 11144365 ~ 11144690 (-)
G2199159 NA other downstream 888373 9997420 ~ 9998649 (-)
G2199158 NA other downstream 889867 9996725 ~ 9997155 (-)
LOC110522725 LOC106584670 other downstream 1761621 9119598 ~ 9125424 (-)
LOC110521266 LOC106584677 other downstream 1855357 9030457 ~ 9031665 (-)
G2197247 NA other downstream 2143391 8698540 ~ 8744360 (-)
G2199633 NA other upstream 119750 11014527 ~ 11014968 (-)
G2201542 NA other upstream 1354174 12248951 ~ 12249982 (-)
LOC110521346 LOC106584547 other upstream 2185819 13078925 ~ 13087584 (-)
LOC110521347 LOC106584546 other upstream 2203253 13094306 ~ 13103545 (-)

Expression


Co-expression Network